Rroxscaffold_3G00222720

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014932
Physical Location & Seq
Reverse (-)
5752377 .. 5757856
5480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222720.1

Sequence Viewer

Length: 1182 bp
ATGCGTGCTGGGATATGTGACATGGTAGCTGTAGCCCGTATCATAAATGCCACTCTTGTAGTTCCGGAACTTGATAAACGGTCATTTTGGAAAGACTCTAGCAACTTTTCAGATGTTTTCGATGAAGACTATTTTATCAATGCTCTATCTAATGATGTCAAAATAATAAAAAAGCTTCCCAAGGAACTGGCGACTGGTACCAAAGCCGTTAAGCATTTTAGAAGCTGGTCTGGTATGGATTACTACCTAGATGAGATCGCTAGCATGTGGGAAGAATATGAGGTTATTCGAGCTGCAAAATCTGATTCTCGCTTAGCAAATAACAACCTACCTTTAGATATTCAGAAGCTTCGCTGCCGTGCTTGTTATGAAGCGCTACGTTTTGCACCTCATATTGAAGCAATGGGAAAATTGTTAGTGGATCGGATGAGGTCCTTAGGTCCTTACATAGCTCTGCATTTACGATTTGAGGAGGACATGCTTGCTTTTAGTGGATGCACGCAGGATTTATCACCAGCTGAAGCTGATGAACTAAGAATCATTCGAGAGAACACCCCATACTGGAAAGAAAAGGAAATAAACCCCGTAGAACAGAGATCCAAAGGATATTGCCCCTTAACTCCAAAGGAGGTTGGAATTTTTCTCACCGCCCTTGGGTACCCATCGAGCACACCAATATACCTTGCGGCTGGAAAGATATATGGGGGCGACTCTCATATGGCAGATCTGCGATCCCGTTTTCCGATACTTATGAGTAAGGAAACATTGACATCTGTCGAGGAGCTTGAATCTTTCAGCGATCATGCATCTCAGATGGCTGCACTTGACTACATTGTTTCAGTTGAAAGTGATGTATTTATTCCTTCATACTCCGGAAACATGGCGAGGGCAGTTGAAGGTCACCGTCGCTTTCTTGGTCACAGGAAGACAATATCTCCTGACAGAAAAGCCCTTGTTCGTTTGATTGACAAACTTGAGCAGGGAACCCTGAAAGAAGGAAAAAATTTATCAAATAGAGTTATTGAATTGCACAGGAGACGGCAGGGCAACCCGCGGAAGAGAAAAGGTCCCATTTCAGGAACCAGGGGTACAGAAAGGTTCCGTTCAGAAGAACCCTTCTATGTTAACCCTTTACCGGATTGTTTGTGTAAGAAGGAATTGCCGATGCAAGCAACTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

393

Amino Acids

44.74

Weight (kDa)

8.33

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 1 - 304 1.8e-98 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014932)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22460
fragaria_vesca FvH4_5g36600
malus_domestica MD08G1188100.v1.1 MD15G1374100.v1.1
pyrus_communis pycom08g16150 pycom15g33520
rosa_chinensis RchiOBHm_Chr7g0242381
rosa_laevigata RLG00000000897
rosa_multiflora Rmu_sc0000429.1_g000056
rosa_roxburghii Rroxscaffold_3G00222720
rosa_rugosa Rorug07G0315100
rosa_samantha Rh7AG470600 Rh7BG440500 Rh7CG487200 Rh7DG455700
rosa_wichuraiana Rw0G009510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 197, 657
AccB1I GGYRCC 2 cut(s) 197, 657
AccII CGCG 1 cut(s) 1054
AccIII TCCGGA 2 cut(s) 64, 872
AciI CCGC 4 cut(s) 648, 686, 1052, 1054
AclWI GGATC 3 cut(s) 429, 591, 726
AcsI RAATTY 2 cut(s) 636, 1003
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 3 cut(s) 199, 659, 1090
AfeI AGCGCT 1 cut(s) 375
AfiI CCNNNNNNNGG 4 cut(s) 561, 654, 1076, 1135
AgsI TTSAA 5 cut(s) 398, 788, 845, 896, 1025
AjnI CCWGG 1 cut(s) 1082
AluBI AGCT 9 cut(s) 29, 175, 225, 293, 349, 452, 518, 524, 784
AluI AGCT 9 cut(s) 29, 175, 225, 293, 349, 452, 518, 524, 784
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 1 cut(s) 1030
AlwI GGATC 3 cut(s) 429, 591, 726
Aor13HI TCCGGA 2 cut(s) 64, 872
Aor51HI AGCGCT 1 cut(s) 375
ApeKI GCWGC 3 cut(s) 293, 354, 818
ApoI RAATTY 2 cut(s) 636, 1003
Asp718I GGTACC 2 cut(s) 197, 657
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 3 cut(s) 432, 440, 1067
AsuHPI GGTGA 3 cut(s) 504, 637, 893
AsuNHI GCTAGC 1 cut(s) 260
AvaII GGWCC 3 cut(s) 432, 440, 1067
AxyI CCTNAGG 1 cut(s) 436
BanI GGYRCC 2 cut(s) 197, 657
BbsI GAAGAC 2 cut(s) 132, 932
Bbv12I GWGCWC 1 cut(s) 671
BbvI GCAGC 3 cut(s) 280, 341, 805
BccI CCATC 2 cut(s) 670, 808
BceAI ACGGC 3 cut(s) 191, 342, 1055
BciT130I CCWGG 1 cut(s) 1084
BcoDI GTCTC 1 cut(s) 1030
BfaI CTAG 3 cut(s) 99, 248, 261
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 377
BglII AGATCT 1 cut(s) 724
BisI GCNGC 4 cut(s) 294, 355, 687, 819
BlpI GCTNAGC 1 cut(s) 313
BlsI GCNGC 4 cut(s) 295, 356, 688, 820
Bme1390I CCNGG 1 cut(s) 1084
Bme18I GGWCC 3 cut(s) 432, 440, 1067
BmgT120I GGNCC 3 cut(s) 432, 440, 1067
BmiI GGNNCC 6 cut(s) 199, 659, 985, 1069, 1081, 1100
BmrFI CCNGG 1 cut(s) 1084
BmsI GCATC 3 cut(s) 485, 815, 1155
BmtI GCTAGC 1 cut(s) 264
BoxI GACNNNNGTC 1 cut(s) 773
BpiI GAAGAC 2 cut(s) 132, 932
Bpu1102I GCTNAGC 1 cut(s) 313
BpuEI CTTGAG 1 cut(s) 995
BsaJI CCNNGG 4 cut(s) 180, 652, 1052, 1083
BsaWI WCCGGW 3 cut(s) 64, 872, 1135
BsaXI ACNNNNNCTCC 2 cut(s) 919, 949
Bsc4I CCNNNNNNNGG 4 cut(s) 561, 654, 1076, 1135
Bse1I ACTGG 3 cut(s) 192, 199, 566
Bse21I CCTNAGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 408
BseAI TCCGGA 2 cut(s) 64, 872
BseBI CCWGG 1 cut(s) 1084
BseDI CCNNGG 4 cut(s) 180, 652, 1052, 1083
BseGI GGATG 2 cut(s) 432, 500
BseLI CCNNNNNNNGG 4 cut(s) 561, 654, 1076, 1135
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 824, 1167
BseNI ACTGG 3 cut(s) 192, 199, 566
BseRI GAGGAG 2 cut(s) 485, 794
BseXI GCAGC 3 cut(s) 280, 341, 805
BseYI CCCAGC 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 1054
BshNI GGYRCC 2 cut(s) 197, 657
BsiHKAI GWGCWC 1 cut(s) 671
BsiSI CCGG 3 cut(s) 65, 873, 1136
BslFI GGGAC 1 cut(s) 1053
BslI CCNNNNNNNGG 4 cut(s) 561, 654, 1076, 1135
BsmAI GTCTC 1 cut(s) 1030
BsmBI CGTCTC 1 cut(s) 1030
BsmFI GGGAC 1 cut(s) 1053
Bsp1286I GDGCHC 1 cut(s) 671
Bsp13I TCCGGA 2 cut(s) 64, 872
Bsp143I GATC 6 cut(s) 255, 421, 596, 724, 731, 799
Bsp1720I GCTNAGC 1 cut(s) 313
BspACI CCGC 4 cut(s) 648, 686, 1052, 1054
BspCNI CTCAG 2 cut(s) 823, 1168
BspEI TCCGGA 2 cut(s) 64, 872
BspFNI CGCG 1 cut(s) 1054
BspLI GGNNCC 6 cut(s) 199, 659, 985, 1069, 1081, 1100
BspOI GCTAGC 1 cut(s) 264
BspPI GGATC 3 cut(s) 429, 591, 726
BspT107I GGYRCC 2 cut(s) 197, 657
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 3 cut(s) 192, 199, 566
BssECI CCNNGG 4 cut(s) 180, 652, 1052, 1083
BssMI GATC 6 cut(s) 255, 421, 596, 724, 731, 799
BssT1I CCWWGG 2 cut(s) 180, 652
Bst2UI CCWGG 1 cut(s) 1084
Bst4CI ACNGT 2 cut(s) 81, 905
Bst6I CTCTTC 1 cut(s) 1052
BstC8I GCNNGC 5 cut(s) 6, 262, 483, 500, 1170
BstDEI CTNAG 5 cut(s) 313, 436, 533, 810, 1176
BstDSI CCRYGG 1 cut(s) 1052
BstEII GGTNACC 1 cut(s) 899
BstF5I GGATG 2 cut(s) 432, 500
BstFNI CGCG 1 cut(s) 1054
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 6 cut(s) 258, 424, 599, 727, 734, 802
BstMAI GTCTC 1 cut(s) 1030
BstMBI GATC 6 cut(s) 255, 421, 596, 724, 731, 799
BstNI CCWGG 1 cut(s) 1084
BstNSI RCATGY 2 cut(s) 268, 481
BstPAI GACNNNNGTC 1 cut(s) 773
BstPI GGTNACC 1 cut(s) 899
BstSCI CCNGG 1 cut(s) 1082
BstSFI CTRYAG 1 cut(s) 30
BstUI CGCG 1 cut(s) 1054
BstV1I GCAGC 3 cut(s) 280, 341, 805
BstV2I GAAGAC 2 cut(s) 132, 932
BstX2I RGATCY 2 cut(s) 596, 724
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 2 cut(s) 596, 724
Bsu36I CCTNAGG 1 cut(s) 436
BtgI CCRYGG 1 cut(s) 1052
BtsCI GGATG 2 cut(s) 432, 500
Cac8I GCNNGC 5 cut(s) 6, 262, 483, 500, 1170
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 3 cut(s) 432, 440, 1067
Cfr42I CCGCGG 1 cut(s) 1055
Csp6I GTAC 3 cut(s) 198, 658, 1089
CviAII CATG 5 cut(s) 22, 265, 478, 803, 880
CviQI GTAC 3 cut(s) 198, 658, 1089
DdeI CTNAG 5 cut(s) 313, 436, 533, 810, 1176
DpnI GATC 6 cut(s) 257, 423, 598, 726, 733, 801
DpnII GATC 6 cut(s) 255, 421, 596, 724, 731, 799
Eam1104I CTCTTC 1 cut(s) 1052
EarI CTCTTC 1 cut(s) 1052
Eco130I CCWWGG 2 cut(s) 180, 652
Eco47I GGWCC 3 cut(s) 432, 440, 1067
Eco47III AGCGCT 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 540
Eco81I CCTNAGG 1 cut(s) 436
Eco91I GGTNACC 1 cut(s) 899
EcoO109I RGGNCCY 3 cut(s) 432, 440, 1067
EcoO65I GGTNACC 1 cut(s) 899
EcoRII CCWGG 1 cut(s) 1082
EcoT14I CCWWGG 2 cut(s) 180, 652
EcoT22I ATGCAT 1 cut(s) 808
ErhI CCWWGG 2 cut(s) 180, 652
Esp3I CGTCTC 1 cut(s) 1030
FaeI CATG 5 cut(s) 25, 268, 481, 806, 883
FaqI GGGAC 1 cut(s) 1053
FatI CATG 5 cut(s) 21, 264, 477, 802, 879
FauI CCCGC 1 cut(s) 1059
FauNDI CATATG 1 cut(s) 717
Fnu4HI GCNGC 4 cut(s) 294, 355, 687, 819
FokI GGATG 2 cut(s) 439, 507
Fsp4HI GCNGC 4 cut(s) 294, 355, 687, 819
FspBI CTAG 3 cut(s) 99, 248, 261
GlaI GCGC 1 cut(s) 375
GluI GCNGC 4 cut(s) 294, 355, 687, 819
GsaI CCCAGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 377
HapII CCGG 3 cut(s) 65, 873, 1136
HhaI GCGC 1 cut(s) 376
Hin1II CATG 5 cut(s) 25, 268, 481, 806, 883
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HincII GTYRAC 1 cut(s) 1126
HindII GTYRAC 1 cut(s) 1126
HindIII AAGCTT 2 cut(s) 173, 347
HinfI GANTC 5 cut(s) 95, 305, 537, 710, 788
HpaI GTTAAC 1 cut(s) 1126
HpaII CCGG 3 cut(s) 65, 873, 1136
HphI GGTGA 3 cut(s) 504, 637, 893
Hpy166II GTNNAC 1 cut(s) 1126
Hpy188I TCNGA 7 cut(s) 112, 304, 345, 426, 744, 813, 1108
Hpy188III TCNNGA 5 cut(s) 65, 545, 873, 938, 1077
Hpy8I GTNNAC 1 cut(s) 1126
Hpy99I CGWCG 1 cut(s) 909
HpyAV CCTTC 5 cut(s) 873, 890, 989, 1126, 1147
HpyCH4III ACNGT 2 cut(s) 81, 905
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 8 cut(s) 296, 386, 457, 498, 806, 821, 1030, 1168
HpyF3I CTNAG 5 cut(s) 313, 436, 533, 810, 1176
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 5 cut(s) 25, 268, 481, 806, 883
HspAI GCGC 1 cut(s) 374
Kpn2I TCCGGA 2 cut(s) 64, 872
KpnI GGTACC 2 cut(s) 201, 661
KspAI GTTAAC 1 cut(s) 1126
KspI CCGCGG 1 cut(s) 1055
Kzo9I GATC 6 cut(s) 255, 421, 596, 724, 731, 799
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 3 cut(s) 280, 341, 805
LweI GCATC 3 cut(s) 485, 815, 1155
MaeI CTAG 3 cut(s) 99, 248, 261
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 3 cut(s) 17, 899, 917
MalI GATC 6 cut(s) 257, 423, 598, 726, 733, 801
MboI GATC 6 cut(s) 255, 421, 596, 724, 731, 799
MboII GAAGA 5 cut(s) 137, 284, 937, 1069, 1121
MflI RGATCY 2 cut(s) 596, 724
MhlI GDGCHC 1 cut(s) 671
MluCI AATT 5 cut(s) 410, 636, 1003, 1025, 1157
MlyI GAGTC 2 cut(s) 89, 704
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 8 cut(s) 274, 399, 423, 463, 466, 622, 772, 879
Mph1103I ATGCAT 1 cut(s) 808
MroI TCCGGA 2 cut(s) 64, 872
MseI TTAA 3 cut(s) 210, 617, 1125
MspA1I CMGCKG 2 cut(s) 518, 1054
MspI CCGG 3 cut(s) 65, 873, 1136
MspR9I CCNGG 1 cut(s) 1084
MvaI CCWGG 1 cut(s) 1084
MvnI CGCG 1 cut(s) 1054
NdeI CATATG 1 cut(s) 717
NdeII GATC 6 cut(s) 255, 421, 596, 724, 731, 799
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 5 cut(s) 25, 268, 481, 806, 883
NlaIV GGNNCC 6 cut(s) 199, 659, 985, 1069, 1081, 1100
NmuCI GTSAC 3 cut(s) 17, 899, 917
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 2 cut(s) 268, 481
PfeI GAWTC 3 cut(s) 305, 537, 788
PkrI GCNGC 4 cut(s) 295, 356, 688, 820
PleI GAGTC 2 cut(s) 89, 704
PpsI GAGTC 2 cut(s) 89, 704
PpuMI RGGWCCY 3 cut(s) 432, 440, 1067
PshAI GACNNNNGTC 1 cut(s) 773
Psp5II RGGWCCY 3 cut(s) 432, 440, 1067
Psp6I CCWGG 1 cut(s) 1082
PspEI GGTNACC 1 cut(s) 899
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 1 cut(s) 1082
PspN4I GGNNCC 6 cut(s) 199, 659, 985, 1069, 1081, 1100
PspPI GGNCC 3 cut(s) 432, 440, 1067
PspPPI RGGWCCY 3 cut(s) 432, 440, 1067
PsrI GAACNNNNNNTAC 4 cut(s) 542, 574, 1072, 1104
PsuI RGATCY 2 cut(s) 596, 724
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 3 cut(s) 199, 659, 1090
RsaNI GTAC 3 cut(s) 198, 658, 1089
SacII CCGCGG 1 cut(s) 1055
SaqAI TTAA 3 cut(s) 210, 617, 1125
SatI GCNGC 4 cut(s) 294, 355, 687, 819
Sau3AI GATC 6 cut(s) 255, 421, 596, 724, 731, 799
Sau96I GGNCC 3 cut(s) 432, 440, 1067
SchI GAGTC 2 cut(s) 89, 704
ScrFI CCNGG 1 cut(s) 1084
SduI GDGCHC 1 cut(s) 671
SfaNI GCATC 3 cut(s) 485, 815, 1155
SfcI CTRYAG 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 1055
SgrBI CCGCGG 1 cut(s) 1055
SinI GGWCC 3 cut(s) 432, 440, 1067
SmlI CTYRAG 1 cut(s) 974
SmoI CTYRAG 1 cut(s) 974
Sse9I AATT 5 cut(s) 410, 636, 1003, 1025, 1157
SsiI CCGC 4 cut(s) 648, 686, 1052, 1054
SspMI CTAG 3 cut(s) 99, 248, 261
StyD4I CCNGG 1 cut(s) 1082
StyI CCWWGG 2 cut(s) 180, 652
TaaI ACNGT 2 cut(s) 81, 905
TaiI ACGT 1 cut(s) 382
TaqI TCGA 5 cut(s) 120, 289, 544, 665, 777
TasI AATT 5 cut(s) 410, 636, 1003, 1025, 1157
TauI GCSGC 1 cut(s) 689
TfiI GAWTC 3 cut(s) 305, 537, 788
Tru1I TTAA 3 cut(s) 210, 617, 1125
Tru9I TTAA 3 cut(s) 210, 617, 1125
TseFI GTSAC 3 cut(s) 17, 899, 917
TseI GCWGC 3 cut(s) 293, 354, 818
Tsp45I GTSAC 3 cut(s) 17, 899, 917
TspDTI ATGAA 4 cut(s) 138, 384, 543, 855
TspGWI ACGGA 1 cut(s) 1091
VpaK11BI GGWCC 3 cut(s) 432, 440, 1067
XapI RAATTY 2 cut(s) 636, 1003
XceI RCATGY 2 cut(s) 268, 481
XspI CTAG 3 cut(s) 99, 248, 261
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.