pycom08g19560

Protein BYPASS1-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011567
Physical Location & Seq
Forward (+)
19599578 .. 19600509
932 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
ATGTTGTGTGGCATTGTCACCATGCCTTCGACGCACAATCCGGGTTCTTCTTCGCCGTTGACTTCGATTGGTCGCTCGATTTGGAGCCGGCGAGAGCCATTTCAATCAGAAGAAGCTAATCAGGAGTTGAGTGAGCTGGAATTAGAGGTTCAATCTTTTCAAAAACTTGTTACGGACCTGTTTCATGACTTGTCAGCTGTTGGTGCTGATGAATTGCTCTCCATTGCGTGGATTAGGAAACTTTTGGATGTTTTTGTTAGCTGCCAAGACGAGTTCAGGGTTTTATTGTTGAAAAACAAGGTGCAGGTTTCTAAACCACCGTTGGACCATTGGGCGGATGAGTACTTGGATAGGAGCTTGAAGGCACTTGACATTTGCAATGCTGCTCGCGATGGGATTGACAAGATTCGTGCGTGGCATAAGCATTTAGAGATCGTTCTGTGTGCCTTGGAGTCTCGCCAGAGGGCATTCTCTGAGGGCCAGTTCCGTCGAGCAAGAAAGGCTTTGGTGGATTTGGCACTTGAAATGCTTGGTGAGAGAGACTCTGGGTCTGTTTTTTCCCACCGCAACTGGTCTTTTGGGCGTAACAATAACACAAGAAAGGATGCTCGCCGTCGGCAACACTCATCTGGGAATCCAACTGGGCATTCCCGCTCTCACTCGTGGAGCATATCCCATTCTTGGTCTGCAGCTAAGCAGCTTCAGTCAATTGCAAGCAACTTGGTAGCACCTCGTGGAAACGAGGTTATTGCAACGAATGGGCTTGCAGGGTCTGTTTTCACAATGGGTTGTGTTATCACGTTTGTTTTGTTGTCTCTTGTGGCTGCGATCCCATGTCAGGATCGAGGTATCAGCACTCATTTTTCGATCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

292

Amino Acids

32.47

Weight (kDa)

8.57

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 22 - 289 1.2e-87 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB7I CCANNNNNTGG 1 cut(s) 228
AccBSI CCGCTC 1 cut(s) 654
AccII CGCG 1 cut(s) 390
AciI CCGC 3 cut(s) 335, 565, 652
AclWI GGATC 2 cut(s) 823, 849
AcuI CTGAAG 1 cut(s) 686
AdeI CACNNNGTG 1 cut(s) 734
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 4 cut(s) 228, 334, 681, 838
AgsI TTSAA 6 cut(s) 104, 152, 161, 292, 361, 524
AhdI GACNNNNNGTC 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 631, 663
AluBI AGCT 7 cut(s) 116, 136, 197, 261, 357, 692, 700
AluI AGCT 7 cut(s) 116, 136, 197, 261, 357, 692, 700
Alw26I GTCTC 3 cut(s) 459, 534, 819
AlwI GGATC 2 cut(s) 823, 849
AlwNI CAGNNNCTG 1 cut(s) 773
AoxI GGCC 1 cut(s) 478
ApeKI GCWGC 5 cut(s) 261, 383, 689, 697, 824
AspS9I GGNCC 3 cut(s) 175, 325, 478
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 10, 545
AvaII GGWCC 2 cut(s) 175, 325
BauI CACGAG 2 cut(s) 661, 732
BbvI GCAGC 5 cut(s) 248, 370, 701, 709, 811
BccI CCATC 1 cut(s) 386
BceAI ACGGC 2 cut(s) 40, 597
BcgI CGANNNNNNTGC 2 cut(s) 731, 765
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 3 cut(s) 459, 534, 819
BfmI CTRYAG 1 cut(s) 687
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 5 cut(s) 262, 384, 690, 698, 825
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 5 cut(s) 263, 385, 691, 699, 826
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 2 cut(s) 175, 325
BmeRI GACNNNNNGTC 1 cut(s) 547
BmgT120I GGNCC 3 cut(s) 175, 325, 478
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 651
BmsI GCATC 1 cut(s) 595
BmuI ACTGGG 1 cut(s) 651
BplI GAGNNNNNCTC 2 cut(s) 527, 559
Bpu1102I GCTNAGC 1 cut(s) 693
BpuMI CCSGG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 447
Bsc4I CCNNNNNNNGG 4 cut(s) 228, 334, 681, 838
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 3 cut(s) 481, 575, 646
Bse3DI GCAATG 2 cut(s) 222, 385
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 3 cut(s) 253, 343, 610
BseLI CCNNNNNNNGG 4 cut(s) 228, 334, 681, 838
BseMI GCAATG 2 cut(s) 222, 385
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 3 cut(s) 481, 575, 646
BseXI GCAGC 5 cut(s) 248, 370, 701, 709, 811
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 1 cut(s) 480
BsiSI CCGG 2 cut(s) 41, 88
BslI CCNNNNNNNGG 4 cut(s) 228, 334, 681, 838
BsmAI GTCTC 3 cut(s) 459, 534, 819
BsmI GAATGC 2 cut(s) 467, 646
BsnI GGCC 1 cut(s) 480
Bsp143I GATC 4 cut(s) 432, 828, 841, 867
Bsp1720I GCTNAGC 1 cut(s) 693
Bsp68I TCGCGA 1 cut(s) 390
BspACI CCGC 3 cut(s) 335, 565, 652
BspANI GGCC 1 cut(s) 480
BspCNI CTCAG 1 cut(s) 466
BspFNI CGCG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 691
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 2 cut(s) 823, 849
BsrBI CCGCTC 1 cut(s) 654
BsrDI GCAATG 2 cut(s) 222, 385
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 3 cut(s) 481, 575, 646
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 4 cut(s) 432, 828, 841, 867
BssSI CACGAG 2 cut(s) 661, 732
BssT1I CCWWGG 1 cut(s) 447
Bst2BI CACGAG 2 cut(s) 661, 732
Bst4CI ACNGT 1 cut(s) 321
BstC8I GCNNGC 5 cut(s) 89, 388, 610, 715, 765
BstDEI CTNAG 2 cut(s) 474, 693
BstF5I GGATG 3 cut(s) 253, 343, 610
BstFNI CGCG 1 cut(s) 390
BstKTI GATC 4 cut(s) 435, 831, 844, 870
BstMAI GTCTC 3 cut(s) 459, 534, 819
BstMBI GATC 4 cut(s) 432, 828, 841, 867
BstMWI GCNNNNNNNGC 3 cut(s) 31, 203, 500
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 687
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 5 cut(s) 248, 370, 701, 709, 811
BsuRI GGCC 1 cut(s) 480
BtgZI GCGATG 1 cut(s) 405
BtsCI GGATG 3 cut(s) 253, 343, 610
BtuMI TCGCGA 1 cut(s) 390
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 5 cut(s) 89, 388, 610, 715, 765
CaiI CAGNNNCTG 1 cut(s) 773
CciI TCATGA 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 175, 325, 478
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 343
CviAII CATG 3 cut(s) 22, 185, 834
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 474, 693
DpnI GATC 4 cut(s) 434, 830, 843, 869
DpnII GATC 4 cut(s) 432, 828, 841, 867
DraIII CACNNNGTG 1 cut(s) 734
DriI GACNNNNNGTC 1 cut(s) 547
Eam1105I GACNNNNNGTC 1 cut(s) 547
EciI GGCGGA 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 447
Eco47I GGWCC 2 cut(s) 175, 325
Eco57I CTGAAG 1 cut(s) 686
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 3 cut(s) 25, 188, 837
FaiI YATR 5 cut(s) 23, 186, 420, 671, 835
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FatI CATG 3 cut(s) 21, 184, 833
FauI CCCGC 1 cut(s) 659
Fnu4HI GCNGC 5 cut(s) 262, 384, 690, 698, 825
FokI GGATG 3 cut(s) 260, 350, 617
Fsp4HI GCNGC 5 cut(s) 262, 384, 690, 698, 825
GluI GCNGC 5 cut(s) 262, 384, 690, 698, 825
HaeIII GGCC 1 cut(s) 480
HapII CCGG 2 cut(s) 41, 88
HgaI GACGC 1 cut(s) 40
Hin1II CATG 3 cut(s) 25, 188, 837
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 4 cut(s) 406, 452, 542, 634
HpaII CCGG 2 cut(s) 41, 88
HphI GGTGA 2 cut(s) 10, 545
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 2 cut(s) 109, 475
Hpy188III TCNNGA 4 cut(s) 122, 185, 389, 839
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 3 cut(s) 34, 492, 618
HpyAV CCTTC 2 cut(s) 36, 355
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 1 cut(s) 800
HpyCH4V TGCA 6 cut(s) 304, 378, 689, 713, 752, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 203, 500
HpyF3I CTNAG 2 cut(s) 474, 693
HpySE526I ACGT 1 cut(s) 800
Hsp92II CATG 3 cut(s) 25, 188, 837
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Kzo9I GATC 4 cut(s) 432, 828, 841, 867
LmnI GCTCC 3 cut(s) 84, 354, 666
Lsp1109I GCAGC 5 cut(s) 248, 370, 701, 709, 811
LweI GCATC 1 cut(s) 595
MaeII ACGT 1 cut(s) 800
MaeIII GTNAC 3 cut(s) 16, 169, 584
MalI GATC 4 cut(s) 434, 830, 843, 869
MbiI CCGCTC 1 cut(s) 654
MboI GATC 4 cut(s) 432, 828, 841, 867
MboII GAAGA 3 cut(s) 39, 42, 122
MfeI CAATTG 1 cut(s) 708
MluCI AATT 3 cut(s) 140, 212, 708
MlyI GAGTC 2 cut(s) 461, 536
MmeI TCCRAC 2 cut(s) 303, 662
MnlI CCTC 6 cut(s) 139, 456, 469, 736, 741, 839
MroNI GCCGGC 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 41, 88
MspR9I CCNGG 1 cut(s) 42
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 2 cut(s) 467, 646
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 3 cut(s) 31, 203, 500
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 1 cut(s) 42
NdeII GATC 4 cut(s) 432, 828, 841, 867
NgoMIV GCCGGC 1 cut(s) 87
NlaIII CATG 3 cut(s) 25, 188, 837
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 16
NruI TCGCGA 1 cut(s) 390
PagI TCATGA 1 cut(s) 184
PctI GAATGC 2 cut(s) 467, 646
PdiI GCCGGC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 406, 634
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 5 cut(s) 263, 385, 691, 699, 826
PleI GAGTC 2 cut(s) 460, 536
PpsI GAGTC 2 cut(s) 460, 536
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 3 cut(s) 175, 325, 478
PstI CTGCAG 1 cut(s) 691
PstNI CAGNNNCTG 1 cut(s) 773
PvuII CAGCTG 1 cut(s) 197
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SatI GCNGC 5 cut(s) 262, 384, 690, 698, 825
Sau3AI GATC 4 cut(s) 432, 828, 841, 867
Sau96I GGNCC 3 cut(s) 175, 325, 478
ScaI AGTACT 1 cut(s) 344
SchI GAGTC 2 cut(s) 461, 536
ScrFI CCNGG 1 cut(s) 42
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 1 cut(s) 687
SinI GGWCC 2 cut(s) 175, 325
Sse9I AATT 3 cut(s) 140, 212, 708
SsiI CCGC 3 cut(s) 335, 565, 652
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 1 cut(s) 803
TaqI TCGA 6 cut(s) 29, 65, 77, 490, 844, 866
TasI AATT 3 cut(s) 140, 212, 708
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 2 cut(s) 406, 634
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 5 cut(s) 261, 383, 689, 697, 824
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 173, 225
TspGWI ACGGA 2 cut(s) 188, 476
Van91I CCANNNNNTGG 1 cut(s) 228
VpaK11BI GGWCC 2 cut(s) 175, 325
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.