pycom09g00930

histone acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0017675
Physical Location & Seq
Forward (+)
685193 .. 687234
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00930.5

Sequence Viewer

Length: 612 bp
ATGCCCAAGCCTGAGAAGCTGCGGCAATGGTATCATTCGTTGATAAAAAAAGCAGCTGATGAAAAAATTGTGGTCAGTCACACTAATTTATATGATCGTTTTTTTATCCCCAGTGGGGAATGTAACTCCAAGGTAACGGCAGCTCGTTTGCCATATTTTGATGGTGACTGTTGGTCTGGTGCAACTGAGGAGGCAATCAGGAAAATTGAACAAGAAAGAATGGCAGACACACAAAAGAAATCGAAGATAACAATAACAAAGAGAACTTTAAAAGCCATGGGCCATACAGATCCTTCTGATGGCTTTACCAAGGATATTCTACTGATGCAGAGAATGGGGCAAAGCATTTTACAGACCAAGGAGGACTTTATGATTGTCGACATGCAGTATGTTTGCACTCACTGTCATGAAGCAATATTATCTGGACGACGCTGGTCCTGCGGTCAGTGCAAAAATTTTCACCTCTGTGAAAGATGCCATGATGCTGAGCGCAAAAATTGTGGACAGGACGTTCACATCTCAGCCAACATGGAACGACATGTGCTTTCTCAGGTTGTGGTTGAGGATGTGATTTCTGATACCAAGGATGATGTTATTTCGAACAACAATTGA

Protein Analysis

204

Amino Acids

23.32

Weight (kDa)

7.09

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00740
pyrus_communis pycom09g00930
rosa_chinensis RchiOBHm_Chr3g0448221
rosa_laevigata RLG00000025936
rosa_multiflora Rmu_co8052802.1_g000001 Rmu_sc0005969.1_g000037 Rmu_sc0005969.1_g000043
rosa_rugosa Rorug02G0609000
rosa_samantha Rh3BG008500 Rh3CG008600 Rh3DG009200
rosa_wichuraiana Rw3G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 378
AciI CCGC 2 cut(s) 22, 441
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 115, 299
AflIII ACRYGT 1 cut(s) 538
AgsI TTSAA 1 cut(s) 209
AhdI GACNNNNNGTC 1 cut(s) 172
AleI CACNNNNGTG 1 cut(s) 465
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
AluBI AGCT 3 cut(s) 19, 56, 143
AluI AGCT 3 cut(s) 19, 56, 143
AlwI GGATC 1 cut(s) 284
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 19, 53, 140
ApoI RAATTY 1 cut(s) 454
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 2 cut(s) 280, 435
AsuHPI GGTGA 2 cut(s) 176, 452
AsuII TTCGAA 1 cut(s) 599
AvaII GGWCC 1 cut(s) 435
BbvI GCAGC 3 cut(s) 6, 65, 152
BccI CCATC 2 cut(s) 155, 293
BceAI ACGGC 1 cut(s) 153
BisI GCNGC 4 cut(s) 20, 23, 54, 141
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 4 cut(s) 21, 24, 55, 142
Bme18I GGWCC 1 cut(s) 435
BmeRI GACNNNNNGTC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 280, 435
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 3 cut(s) 315, 464, 472
BmuI ACTGGG 1 cut(s) 105
BoxI GACNNNNGTC 1 cut(s) 433
Bpu1102I GCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 599
BsaJI CCNNGG 5 cut(s) 129, 276, 309, 357, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 299
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 32
BseDI CCNNGG 5 cut(s) 129, 276, 309, 357, 582
BseGI GGATG 2 cut(s) 571, 592
BseLI CCNNNNNNNGG 2 cut(s) 115, 299
BseMI GCAATG 1 cut(s) 32
BseMII CTCAG 4 cut(s) 177, 477, 534, 563
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 3 cut(s) 6, 65, 152
BshFI GGCC 1 cut(s) 282
BslI CCNNNNNNNGG 2 cut(s) 115, 299
BsnI GGCC 1 cut(s) 282
Bsp119I TTCGAA 1 cut(s) 599
Bsp143I GATC 2 cut(s) 94, 289
Bsp1720I GCTNAGC 1 cut(s) 486
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 2 cut(s) 22, 441
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 5 cut(s) 4, 178, 478, 533, 562
BspHI TCATGA 1 cut(s) 406
BspPI GGATC 1 cut(s) 284
BspT104I TTCGAA 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 32
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 5 cut(s) 129, 276, 309, 357, 582
BssMI GATC 2 cut(s) 94, 289
BssT1I CCWWGG 5 cut(s) 129, 276, 309, 357, 582
Bst4CI ACNGT 2 cut(s) 170, 404
BstBI TTCGAA 1 cut(s) 599
BstDEI CTNAG 5 cut(s) 12, 186, 486, 520, 549
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 571, 592
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 2 cut(s) 97, 292
BstMBI GATC 2 cut(s) 94, 289
BstMWI GCNNNNNNNGC 3 cut(s) 16, 438, 447
BstNSI RCATGY 2 cut(s) 385, 542
BstPAI GACNNNNGTC 1 cut(s) 433
BstV1I GCAGC 3 cut(s) 6, 65, 152
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 571, 592
BtsIMutI CAGTG 3 cut(s) 118, 400, 452
CciI TCATGA 1 cut(s) 406
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 2 cut(s) 280, 435
CseI GACGC 1 cut(s) 438
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 6 cut(s) 277, 382, 407, 479, 529, 539
CviJI RGCY 8 cut(s) 10, 19, 56, 143, 275, 282, 303, 524
CviKI_1 RGCY 8 cut(s) 10, 19, 56, 143, 275, 282, 303, 524
DdeI CTNAG 5 cut(s) 12, 186, 486, 520, 549
DpnI GATC 2 cut(s) 96, 291
DpnII GATC 2 cut(s) 94, 289
DraI TTTAAA 1 cut(s) 270
DriI GACNNNNNGTC 1 cut(s) 172
Eam1105I GACNNNNNGTC 1 cut(s) 172
Eco130I CCWWGG 5 cut(s) 129, 276, 309, 357, 582
Eco47I GGWCC 1 cut(s) 435
EcoT14I CCWWGG 5 cut(s) 129, 276, 309, 357, 582
ErhI CCWWGG 5 cut(s) 129, 276, 309, 357, 582
FaeI CATG 6 cut(s) 280, 385, 410, 482, 532, 542
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FatI CATG 6 cut(s) 276, 381, 406, 478, 528, 538
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 4 cut(s) 20, 23, 54, 141
FokI GGATG 2 cut(s) 578, 599
Fsp4HI GCNGC 4 cut(s) 20, 23, 54, 141
GlaI GCGC 1 cut(s) 491
GluI GCNGC 4 cut(s) 20, 23, 54, 141
HaeIII GGCC 1 cut(s) 282
HgaI GACGC 1 cut(s) 438
HhaI GCGC 1 cut(s) 492
Hin1II CATG 6 cut(s) 280, 385, 410, 482, 532, 542
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HphI GGTGA 2 cut(s) 176, 452
Hpy166II GTNNAC 3 cut(s) 379, 503, 514
Hpy188I TCNGA 2 cut(s) 298, 577
Hpy188III TCNNGA 3 cut(s) 199, 407, 423
Hpy8I GTNNAC 3 cut(s) 379, 503, 514
Hpy99I CGWCG 1 cut(s) 432
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 2 cut(s) 170, 404
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 5 cut(s) 182, 328, 385, 396, 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 438, 447
HpyF3I CTNAG 5 cut(s) 12, 186, 486, 520, 549
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 6 cut(s) 280, 385, 410, 482, 532, 542
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 2 cut(s) 94, 289
LpnPI CCDG 9 cut(s) 24, 124, 162, 184, 408, 418, 451, 491, 536
Lsp1109I GCAGC 3 cut(s) 6, 65, 152
LweI GCATC 3 cut(s) 315, 464, 472
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 4 cut(s) 77, 122, 133, 164
MalI GATC 2 cut(s) 96, 291
MboI GATC 2 cut(s) 94, 289
MboII GAAGA 1 cut(s) 256
MfeI CAATTG 1 cut(s) 607
MflI RGATCY 1 cut(s) 289
MluCI AATT 6 cut(s) 66, 85, 204, 454, 496, 607
MnlI CCTC 5 cut(s) 181, 184, 355, 473, 556
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 2 cut(s) 405, 465
MspA1I CMGCKG 1 cut(s) 56
MunI CAATTG 1 cut(s) 607
MwoI GCNNNNNNNGC 3 cut(s) 16, 438, 447
NcoI CCATGG 1 cut(s) 276
NdeII GATC 2 cut(s) 94, 289
NlaIII CATG 6 cut(s) 280, 385, 410, 482, 532, 542
NmuCI GTSAC 2 cut(s) 77, 164
NspI RCATGY 2 cut(s) 385, 542
NspV TTCGAA 1 cut(s) 599
OliI CACNNNNGTG 1 cut(s) 465
PagI TCATGA 1 cut(s) 406
PciI ACATGT 1 cut(s) 538
PkrI GCNGC 4 cut(s) 21, 24, 55, 142
PscI ACATGT 1 cut(s) 538
PshAI GACNNNNGTC 1 cut(s) 433
PspPI GGNCC 2 cut(s) 280, 435
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 56
RseI CAYNNNNRTG 2 cut(s) 405, 465
SalI GTCGAC 1 cut(s) 377
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 4 cut(s) 20, 23, 54, 141
Sau3AI GATC 2 cut(s) 94, 289
Sau96I GGNCC 2 cut(s) 280, 435
SetI ASST 7 cut(s) 21, 58, 135, 145, 465, 513, 555
SfaNI GCATC 3 cut(s) 315, 464, 472
SfuI TTCGAA 1 cut(s) 599
SinI GGWCC 1 cut(s) 435
SmiMI CAYNNNNRTG 2 cut(s) 405, 465
Sse9I AATT 6 cut(s) 66, 85, 204, 454, 496, 607
SsiI CCGC 2 cut(s) 22, 441
SspI AATATT 1 cut(s) 417
StyI CCWWGG 5 cut(s) 129, 276, 309, 357, 582
TaaI ACNGT 2 cut(s) 170, 404
TaiI ACGT 1 cut(s) 513
TaqI TCGA 3 cut(s) 242, 378, 599
TasI AATT 6 cut(s) 66, 85, 204, 454, 496, 607
TauI GCSGC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 3 cut(s) 118, 407, 452
TseFI GTSAC 2 cut(s) 77, 164
TseI GCWGC 3 cut(s) 19, 53, 140
Tsp45I GTSAC 2 cut(s) 77, 164
TspDTI ATGAA 2 cut(s) 75, 423
TspRI CASTG 3 cut(s) 118, 407, 452
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 1 cut(s) 454
XceI RCATGY 2 cut(s) 385, 542
XmiI GTMKAC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.