Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8052802.1

Orthogroup ID

OG0017675

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 481

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8052802.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 481 bp

aggcagttcacccacggttggtcgtgtgacaaagatcagtagagagacacaactgactgaaggattgagtccagcattgataaaggaactgctccatgtgttggaacatgctgctgtgtgttaccctatcaagaaccggccttgctcttaccctaacacaaactgcctcaaaattaaaaagctatttgtccatgtaaagaagtgcagtgttcgagctgctggaggttgtgaactatgtaaaaaggcatggcttggattgattttgcattcgaaagaatgtagaaaatcaaattgcattgtaccgcgttgcatggacctgaggaagtacacagatcagctagggaaaaccagagatgggactaaaagctataaagctaacattgaggtgtccagttgttcaagccagaccttgttgccaacagaatcacagtggttgcctgaggctgggatatgggcattcccatacatgattccattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

159

Amino Acids

17.76

Weight (kDa)

9.37

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00740
pyrus_communis	pycom09g00930
rosa_chinensis	RchiOBHm_Chr3g0448221
rosa_laevigata	RLG00000025936
rosa_multiflora	Rmu_co8052802.1_g000001 Rmu_sc0005969.1_g000037 Rmu_sc0005969.1_g000043
rosa_rugosa	Rorug02G0609000
rosa_samantha	Rh3BG008500 Rh3CG008600 Rh3DG009200
rosa_wichuraiana	Rw3G000720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccII	CGCG	1 cut(s)	305
AciI	CCGC	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	2 cut(s)	301, 327
AfiI	CCNNNNNNNGG	4 cut(s)	18, 101, 355, 444
AgsI	TTSAA	1 cut(s)	400
AluBI	AGCT	5 cut(s)	182, 216, 338, 367, 375
AluI	AGCT	5 cut(s)	182, 216, 338, 367, 375
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	111, 216
AspS9I	GGNCC	1 cut(s)	314
AsuII	TTCGAA	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	314
AxyI	CCTNAGG	2 cut(s)	318, 439
BbvI	GCAGC	2 cut(s)	98, 203
BccI	CCATC	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	339
BisI	GCNGC	2 cut(s)	112, 217
BlsI	GCNGC	2 cut(s)	113, 218
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	241
Bpu14I	TTCGAA	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 101, 355, 444
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	391
Bse21I	CCTNAGG	2 cut(s)	318, 439
BseDI	CCNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	4 cut(s)	18, 101, 355, 444
BseMII	CTCAG	2 cut(s)	309, 430
BseNI	ACTGG	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	98, 203
BseYI	CCCAGC	1 cut(s)	444
BsgI	GTGCAG	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	4 cut(s)	18, 101, 355, 444
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	2 cut(s)	266, 456
BsnI	GGCC	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	34, 332
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	2 cut(s)	310, 431
BspFNI	CGCG	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	34, 332
Bst4CI	ACNGT	2 cut(s)	17, 430
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	318, 439
BstDSI	CCRYGG	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	305
BstKTI	GATC	2 cut(s)	37, 335
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	34, 332
BstNSI	RCATGY	1 cut(s)	111
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	98, 203
Bsu36I	CCTNAGG	2 cut(s)	318, 439
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	212, 435
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	300, 326
CviAII	CATG	6 cut(s)	96, 108, 192, 247, 311, 467
CviJI	RGCY	9 cut(s)	140, 182, 216, 251, 338, 367, 375, 403, 444
CviKI_1	RGCY	9 cut(s)	140, 182, 216, 251, 338, 367, 375, 403, 444
CviQI	GTAC	2 cut(s)	300, 326
DdeI	CTNAG	2 cut(s)	318, 439
DpnI	GATC	2 cut(s)	36, 334
DpnII	GATC	2 cut(s)	34, 332
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	79
Eco81I	CCTNAGG	2 cut(s)	318, 439
FaeI	CATG	6 cut(s)	99, 111, 195, 250, 314, 470
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	6 cut(s)	95, 107, 191, 246, 310, 466
Fnu4HI	GCNGC	2 cut(s)	112, 217
Fsp4HI	GCNGC	2 cut(s)	112, 217
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	2 cut(s)	112, 217
GsaI	CCCAGC	1 cut(s)	448
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	6 cut(s)	99, 111, 195, 250, 314, 470
HinfI	GANTC	3 cut(s)	68, 423, 470
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	3 cut(s)	9, 231, 328
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	3 cut(s)	9, 231, 328
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	2 cut(s)	17, 430
HpyCH4V	TGCA	4 cut(s)	205, 266, 295, 310
HpyF3I	CTNAG	2 cut(s)	318, 439
Hsp92II	CATG	6 cut(s)	99, 111, 195, 250, 314, 470
Kzo9I	GATC	2 cut(s)	34, 332
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	9 cut(s)	85, 150, 205, 330, 362, 404, 417, 430, 451
Lsp1109I	GCAGC	2 cut(s)	98, 203
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	26, 120
MalI	GATC	2 cut(s)	36, 334
MboI	GATC	2 cut(s)	34, 332
MluCI	AATT	2 cut(s)	172, 290
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	5 cut(s)	177, 216, 313, 377, 434
MseI	TTAA	1 cut(s)	175
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	1 cut(s)	137
Mva1269I	GAATGC	2 cut(s)	266, 456
MvnI	CGCG	1 cut(s)	305
NdeII	GATC	2 cut(s)	34, 332
NlaIII	CATG	6 cut(s)	99, 111, 195, 250, 314, 470
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	1 cut(s)	111
NspV	TTCGAA	1 cut(s)	270
PctI	GAATGC	2 cut(s)	266, 456
PfeI	GAWTC	2 cut(s)	423, 470
PflMI	CCANNNNNTGG	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	113, 218
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	444
PspPI	GGNCC	1 cut(s)	314
RsaI	GTAC	2 cut(s)	301, 327
RsaNI	GTAC	2 cut(s)	300, 326
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	175
SatI	GCNGC	2 cut(s)	112, 217
Sau3AI	GATC	2 cut(s)	34, 332
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	77
SetI	ASST	9 cut(s)	184, 218, 227, 319, 340, 369, 377, 388, 411
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	2 cut(s)	172, 290
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	17, 430
TaqI	TCGA	2 cut(s)	212, 270
TasI	AATT	2 cut(s)	172, 290
TatI	WGTACW	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	423, 470
Tru1I	TTAA	1 cut(s)	175
Tru9I	TTAA	1 cut(s)	175
TscAI	CASTG	2 cut(s)	212, 435
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	2 cut(s)	111, 216
Tsp45I	GTSAC	1 cut(s)	26
TspRI	CASTG	2 cut(s)	212, 435
Van91I	CCANNNNNTGG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	314
XceI	RCATGY	1 cut(s)	111
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.