Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0017675

Physical Location & Seq

Genomic Coordinates Reverse (-)

157980 .. 159227

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005969.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atgataaagaaagcaagtaatgaagggattgtggtcggcagtactaacttatatgatcggtattttattcctagtagtacttgggaataccactccaaggtcacagcagctcgtttgccacattttgatggtgactattggtctaatgctgctgaagatttgatcaaggagattggcaaggaggaggagacaaaaattagaaagagaactttagaagcgatgggacatacaaatgcttctgatggttccaccaaagatattcttctgatgcagaaactgggggatgctatcttaaccaacagggagaatttcatggttgtcgatttgcagtatgtttgcatacgctgcaatcaagcgatattatctggggaacactggtcttgtagtcagtgcaaaaactttcacatttgtgaaaaatgccatagcctttgtggtgggaaggacatgcacatgacaatcaacatggaacaacatgtgctctctcgggtaatagtactactggaggattatgagcttcctgatacaaaggatagagaggttattttgaacaatggtttattcaaggaaaggacttctttcttgaacttctgtgtgaagaatcgttatcaatttgacatgcttcgtcaggccaagtattcctcactgatgattctccatcacctcagtgatcttactgcactgactagtgctgagaagaacaagacatgcagcaacattagccataaagttgctgatcagagctggatatgtgagattgatcaagacaaaggcagttcacccgcggttggtcatgtgacaaagatcagcagagagacagaactgactgaaggattgagtccagcattgataaatgaactgctccatgtgttaaaacatgctgatgtgtgttaccctatcaagaaccggccttgctcttaccccaacacaaactgcctcaaaattaaaaagctatttgtccatgtaaaaaagtgcagtgttcgagctgctggaggttgtgaaccatgtaaaaaggcgtggcttggattgattttgcattcgaaagaatgtagaaaatcaaattgcattgtaccgcgttgcatggacctgaggaagtacacagatcagcgagggaaaaccagagatgggactaaaagatttaaagctaacatggaggtgtccagttgttcaagccagaccttgttgccaacagaatcacagtggttgcctgaggctgagatatgggcattcccatacattattccattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

415

Amino Acids

47.29

Weight (kDa)

8.48

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017675)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00740
pyrus_communis	pycom09g00930
rosa_chinensis	RchiOBHm_Chr3g0448221
rosa_laevigata	RLG00000025936
rosa_multiflora	Rmu_co8052802.1_g000001 Rmu_sc0005969.1_g000037 Rmu_sc0005969.1_g000043
rosa_rugosa	Rorug02G0609000
rosa_samantha	Rh3BG008500 Rh3CG008600 Rh3DG009200
rosa_wichuraiana	Rw3G000720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	782, 1072
AciI	CCGC	3 cut(s)	780, 782, 1070
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	2 cut(s)	174, 846
AfaI	GTAC	5 cut(s)	43, 79, 495, 1068, 1094
AfiI	CCNNNNNNNGG	3 cut(s)	97, 785, 1122
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	4 cut(s)	547, 562, 583, 1167
AhdI	GACNNNNNGTC	1 cut(s)	139
AhlI	ACTAGT	1 cut(s)	683
AleI	CACNNNNGTG	2 cut(s)	408, 663
AluBI	AGCT	6 cut(s)	110, 514, 741, 949, 983, 1142
AluI	AGCT	6 cut(s)	110, 514, 741, 949, 983, 1142
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	2 cut(s)	182, 806
AlwNI	CAGNNNCTG	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	2 cut(s)	627, 905
ApeKI	GCWGC	5 cut(s)	107, 149, 345, 708, 983
ApoI	RAATTY	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	1081
AsuHPI	GGTGA	3 cut(s)	143, 650, 768
AsuII	TTCGAA	1 cut(s)	1037
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	1081
AxyI	CCTNAGG	2 cut(s)	1085, 1206
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	5 cut(s)	119, 136, 332, 720, 970
BccI	CCATC	5 cut(s)	122, 214, 236, 663, 1115
BclI	TGATCA	3 cut(s)	162, 733, 757
BcoDI	GTCTC	2 cut(s)	182, 806
BcuI	ACTAGT	1 cut(s)	683
BfaI	CTAG	2 cut(s)	72, 684
BisI	GCNGC	5 cut(s)	108, 150, 346, 709, 984
BlsI	GCNGC	5 cut(s)	109, 151, 347, 710, 985
BmcAI	AGTACT	3 cut(s)	43, 79, 495
Bme18I	GGWCC	1 cut(s)	1081
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	1081
BmiI	GGNNCC	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	258, 274
BmuI	ACTGGG	1 cut(s)	287
BpmI	CTGGAG	2 cut(s)	521, 1008
Bpu14I	TTCGAA	1 cut(s)	1037
BsaJI	CCNNGG	2 cut(s)	96, 780
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 785, 1122
Bse118I	RCCGGY	1 cut(s)	903
Bse1I	ACTGG	4 cut(s)	282, 380, 504, 1158
Bse21I	CCTNAGG	2 cut(s)	1085, 1206
BseDI	CCNNGG	2 cut(s)	96, 780
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	3 cut(s)	97, 785, 1122
BseMII	CTCAG	5 cut(s)	676, 681, 1076, 1197, 1203
BseNI	ACTGG	4 cut(s)	282, 380, 504, 1158
BseRI	GAGGAG	2 cut(s)	197, 200
BseXI	GCAGC	5 cut(s)	119, 136, 332, 720, 970
BsgI	GTGCAG	2 cut(s)	660, 991
Bsh1236I	CGCG	2 cut(s)	782, 1072
BshFI	GGCC	2 cut(s)	629, 907
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	904
BslFI	GGGAC	2 cut(s)	237, 1138
BslI	CCNNNNNNNGG	3 cut(s)	97, 785, 1122
BsmAI	GTCTC	2 cut(s)	182, 806
BsmFI	GGGAC	2 cut(s)	237, 1138
BsmI	GAATGC	2 cut(s)	1033, 1223
BsnI	GGCC	2 cut(s)	629, 907
BsoBI	CYCGRG	1 cut(s)	483
Bsp119I	TTCGAA	1 cut(s)	1037
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	7 cut(s)	55, 162, 667, 733, 757, 801, 1099
BspACI	CCGC	3 cut(s)	780, 782, 1070
BspANI	GGCC	2 cut(s)	629, 907
BspCNI	CTCAG	5 cut(s)	675, 682, 1077, 1198, 1204
BspFNI	CGCG	2 cut(s)	782, 1072
BspLI	GGNNCC	1 cut(s)	247
BspT104I	TTCGAA	1 cut(s)	1037
BsrFI	RCCGGY	1 cut(s)	903
BsrI	ACTGG	4 cut(s)	282, 380, 504, 1158
BssAI	RCCGGY	1 cut(s)	903
BssECI	CCNNGG	2 cut(s)	96, 780
BssMI	GATC	7 cut(s)	55, 162, 667, 733, 757, 801, 1099
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	1197
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	1037
BstDEI	CTNAG	5 cut(s)	662, 690, 1085, 1206, 1212
BstDSI	CCRYGG	1 cut(s)	780
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	2 cut(s)	782, 1072
BstKTI	GATC	7 cut(s)	58, 165, 670, 736, 760, 804, 1102
BstMAI	GTCTC	2 cut(s)	182, 806
BstMBI	GATC	7 cut(s)	55, 162, 667, 733, 757, 801, 1099
BstMWI	GCNNNNNNNGC	2 cut(s)	345, 717
BstNSI	RCATGY	5 cut(s)	448, 476, 619, 708, 878
BstUI	CGCG	2 cut(s)	782, 1072
BstV1I	GCAGC	5 cut(s)	119, 136, 332, 720, 970
Bsu36I	CCTNAGG	2 cut(s)	1085, 1206
BsuRI	GGCC	2 cut(s)	629, 907
BtgI	CCRYGG	1 cut(s)	780
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	979
BtsIMutI	CAGTG	7 cut(s)	373, 395, 641, 670, 677, 979, 1202
CaiI	CAGNNNCTG	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	903
Cfr13I	GGNCC	1 cut(s)	1081
Cfr42I	CCGCGG	1 cut(s)	783
Csp6I	GTAC	5 cut(s)	42, 78, 494, 1067, 1093
CviQI	GTAC	5 cut(s)	42, 78, 494, 1067, 1093
DdeI	CTNAG	5 cut(s)	662, 690, 1085, 1206, 1212
DpnI	GATC	7 cut(s)	57, 164, 669, 735, 759, 803, 1101
DpnII	GATC	7 cut(s)	55, 162, 667, 733, 757, 801, 1099
DraI	TTTAAA	1 cut(s)	1138
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1105I	GACNNNNNGTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	1081
Eco57I	CTGAAG	2 cut(s)	174, 846
Eco81I	CCTNAGG	2 cut(s)	1085, 1206
Eco88I	CYCGRG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FalI	AAGNNNNNCTT	4 cut(s)	246, 278, 559, 591
FaqI	GGGAC	2 cut(s)	237, 1138
FauI	CCCGC	1 cut(s)	787
FbaI	TGATCA	3 cut(s)	162, 733, 757
Fnu4HI	GCNGC	5 cut(s)	108, 150, 346, 709, 984
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	5 cut(s)	108, 150, 346, 709, 984
FspBI	CTAG	2 cut(s)	72, 684
GluI	GCNGC	5 cut(s)	108, 150, 346, 709, 984
GsuI	CTGGAG	2 cut(s)	521, 1008
HaeIII	GGCC	2 cut(s)	629, 907
HapII	CCGG	1 cut(s)	904
HinfI	GANTC	4 cut(s)	598, 649, 835, 1190
HpaII	CCGG	1 cut(s)	904
HphI	GGTGA	3 cut(s)	143, 650, 768
Hpy166II	GTNNAC	3 cut(s)	776, 998, 1095
Hpy188I	TCNGA	3 cut(s)	241, 267, 738
Hpy188III	TCNNGA	4 cut(s)	518, 580, 761, 898
Hpy8I	GTNNAC	3 cut(s)	776, 998, 1095
HpyAV	CCTTC	3 cut(s)	17, 433, 821
HpyCH4III	ACNGT	1 cut(s)	1197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	345, 717
HpyF3I	CTNAG	5 cut(s)	662, 690, 1085, 1206, 1212
Ksp22I	TGATCA	3 cut(s)	162, 733, 757
KspI	CCGCGG	1 cut(s)	783
Kzo9I	GATC	7 cut(s)	55, 162, 667, 733, 757, 801, 1099
LmnI	GCTCC	1 cut(s)	864
Lsp1109I	GCAGC	5 cut(s)	119, 136, 332, 720, 970
LweI	GCATC	2 cut(s)	258, 274
MaeI	CTAG	2 cut(s)	72, 684
MaeIII	GTNAC	4 cut(s)	100, 131, 793, 887
MalI	GATC	7 cut(s)	57, 164, 669, 735, 759, 803, 1101
MboI	GATC	7 cut(s)	55, 162, 667, 733, 757, 801, 1099
MboII	GAAGA	4 cut(s)	167, 254, 607, 706
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	5 cut(s)	195, 307, 608, 939, 1057
MlyI	GAGTC	1 cut(s)	844
MseI	TTAA	4 cut(s)	293, 869, 942, 1137
MslI	CAYNNNNRTG	7 cut(s)	126, 231, 408, 449, 663, 879, 1151
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	1 cut(s)	904
Mva1269I	GAATGC	2 cut(s)	1033, 1223
MvnI	CGCG	2 cut(s)	782, 1072
MwoI	GCNNNNNNNGC	2 cut(s)	345, 717
NdeII	GATC	7 cut(s)	55, 162, 667, 733, 757, 801, 1099
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	3 cut(s)	100, 131, 793
NspI	RCATGY	5 cut(s)	448, 476, 619, 708, 878
NspV	TTCGAA	1 cut(s)	1037
OliI	CACNNNNGTG	2 cut(s)	408, 663
PciI	ACATGT	1 cut(s)	472
PctI	GAATGC	2 cut(s)	1033, 1223
PfeI	GAWTC	3 cut(s)	598, 649, 1190
PkrI	GCNGC	5 cut(s)	109, 151, 347, 710, 985
PleI	GAGTC	1 cut(s)	843
PpsI	GAGTC	1 cut(s)	843
PscI	ACATGT	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	1081
PstNI	CAGNNNCTG	1 cut(s)	277
RsaI	GTAC	5 cut(s)	43, 79, 495, 1068, 1094
RsaNI	GTAC	5 cut(s)	42, 78, 494, 1067, 1093
RseI	CAYNNNNRTG	7 cut(s)	126, 231, 408, 449, 663, 879, 1151
SacII	CCGCGG	1 cut(s)	783
SaqAI	TTAA	4 cut(s)	293, 869, 942, 1137
SatI	GCNGC	5 cut(s)	108, 150, 346, 709, 984
Sau3AI	GATC	7 cut(s)	55, 162, 667, 733, 757, 801, 1099
Sau96I	GGNCC	1 cut(s)	1081
ScaI	AGTACT	3 cut(s)	43, 79, 495
SchI	GAGTC	1 cut(s)	844
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	2 cut(s)	258, 274
Sfr303I	CCGCGG	1 cut(s)	783
SfuI	TTCGAA	1 cut(s)	1037
SgrBI	CCGCGG	1 cut(s)	783
SinI	GGWCC	1 cut(s)	1081
SmiMI	CAYNNNNRTG	7 cut(s)	126, 231, 408, 449, 663, 879, 1151
SpeI	ACTAGT	1 cut(s)	683
Sse9I	AATT	5 cut(s)	195, 307, 608, 939, 1057
SsiI	CCGC	3 cut(s)	780, 782, 1070
SspMI	CTAG	2 cut(s)	72, 684
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	1197
TaqI	TCGA	3 cut(s)	321, 979, 1037
TasI	AATT	5 cut(s)	195, 307, 608, 939, 1057
TatI	WGTACW	4 cut(s)	41, 77, 493, 1092
TfiI	GAWTC	3 cut(s)	598, 649, 1190
Tru1I	TTAA	4 cut(s)	293, 869, 942, 1137
Tru9I	TTAA	4 cut(s)	293, 869, 942, 1137
TscAI	CASTG	7 cut(s)	380, 395, 648, 670, 684, 979, 1202
TseFI	GTSAC	3 cut(s)	100, 131, 793
TseI	GCWGC	5 cut(s)	107, 149, 345, 708, 983
Tsp45I	GTSAC	3 cut(s)	100, 131, 793
TspDTI	ATGAA	3 cut(s)	36, 301, 867
TspRI	CASTG	7 cut(s)	380, 395, 648, 670, 684, 979, 1202
VpaK11BI	GGWCC	1 cut(s)	1081
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	5 cut(s)	448, 476, 619, 708, 878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XspI	CTAG	2 cut(s)	72, 684
ZrmI	AGTACT	3 cut(s)	43, 79, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.