pycom09g04530

N-acetyltransferase 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011423
Physical Location & Seq
Reverse (-)
3354575 .. 3357713
3139 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
ATGGAGCGAGAGAAAGAGAAAGTGAGCTTGGAGGGAGGGAGAGTGATACTGGTCCCGTACATGAAGGAACACGTCCCAAAATACCACGACTGGATGAAGGACCCAGCTCTCCTCCAAGCCACCGGCTCCGAGCCCCTCACCCTCGACCAGGAATACCAGATGCAGCTCACCTGGACCCAAGACCCCAACAAGCAGACTTTCATTGTATTGGATAAGCAATTGGTTGTGGGAGAGTTCAGCCATGGAGAACCCCATGTGGAAGCCATGATTGGTGATGTGAACTTATATATGAATGACCTGGACGATCCCCACATGGGAGAGATTGAAATAATGATTGCTGAACAGAAAAGTCGTGGTAAAGGACTTGGGAAGGAATCGGCCTTGATGATGATGGCCTTTGCAATTGAAAATTTGGCGATCCACATCTTCCGTGCTAAAATTGGGGAACAAAATGGAGCATCTCTTAGCTTGTTTCGGAAATTGGGCTTTGAGGAGATCTCTCGTAGTGAAATCTTCAAAGAGGTGACGTTGGAGTTACATGTAACGAAGGACAAGCATGAGGAGTTGCTGCAGATAGGTAGCTTCGTGACTCATACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

200

Amino Acids

22.74

Weight (kDa)

5.19

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 14 - 164 4e-18 Acetyltransferase (GNAT) domain
Acetyltransf_8 PF13523 22 - 166 2.7e-06 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 55 - 163 8.2e-06 Acetyltransferase (GNAT) family
FR47 PF08445 103 - 168 8.8e-06 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04845 AT2G04845 AT2G04845 AT2G04845 AT2G04845
fragaria_vesca FvH4_6g41300 FvH4_6g41300
malus_domestica MD09G1120700.v1.1
prunus_persica Prupe.3G202800_v2.0.a1
pyrus_communis pycom09g04530 pycom17g10360
rosa_chinensis RchiOBHm_Chr2g0156861
rosa_laevigata RLG00000020947
rosa_multiflora Rmu_sc0009209.1_g000001 Rmu_ssc0000286.1_g000025
rosa_roxburghii Rroxscaffold_2G00092650
rosa_rugosa Rorug02G0456700
rosa_samantha Rh2AG522300 Rh2CG507200
rosa_wichuraiana Rw2G043130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 299, 412
AcsI RAATTY 1 cut(s) 409
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 148, 314
AflIII ACRYGT 2 cut(s) 70, 538
AgsI TTSAA 3 cut(s) 326, 407, 517
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 3 cut(s) 147, 170, 297
AjuI GAANNNNNNNTTGG 4 cut(s) 11, 43, 252, 284
AluBI AGCT 5 cut(s) 27, 107, 166, 468, 582
AluI AGCT 5 cut(s) 27, 107, 166, 468, 582
AlwI GGATC 2 cut(s) 299, 412
AoxI GGCC 2 cut(s) 378, 393
ApeKI GCWGC 2 cut(s) 163, 568
ApoI RAATTY 1 cut(s) 409
AspS9I GGNCC 3 cut(s) 52, 100, 174
AsuHPI GGTGA 4 cut(s) 130, 160, 284, 535
AvaII GGWCC 3 cut(s) 52, 100, 174
BanII GRGCYC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 175, 555
BccI CCATC 1 cut(s) 385
BciT130I CCWGG 3 cut(s) 149, 172, 299
BfaI CTAG 1 cut(s) 598
BfmI CTRYAG 1 cut(s) 569
BglII AGATCT 1 cut(s) 495
BisI GCNGC 2 cut(s) 164, 569
BlsI GCNGC 2 cut(s) 165, 570
Bme1390I CCNGG 3 cut(s) 149, 172, 299
Bme18I GGWCC 3 cut(s) 52, 100, 174
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 52, 100, 174
BmiI GGNNCC 4 cut(s) 54, 102, 127, 176
BmrFI CCNGG 3 cut(s) 149, 172, 299
BmsI GCATC 2 cut(s) 150, 467
BplI GAGNNNNNCTC 2 cut(s) 482, 514
BsaBI GATNNNNATC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 314
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 54, 95
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 3 cut(s) 149, 172, 299
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 2 cut(s) 148, 314
BseNI ACTGG 2 cut(s) 54, 95
BseRI GAGGAG 3 cut(s) 101, 506, 575
BseXI GCAGC 2 cut(s) 175, 555
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 2 cut(s) 380, 395
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 38, 59
BslI CCNNNNNNNGG 2 cut(s) 148, 314
BsmFI GGGAC 2 cut(s) 38, 59
BsnI GGCC 2 cut(s) 380, 395
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 3 cut(s) 304, 417, 495
Bsp19I CCATGG 1 cut(s) 241
BspANI GGCC 2 cut(s) 380, 395
BspLI GGNNCC 4 cut(s) 54, 102, 127, 176
BspMAI CTGCAG 1 cut(s) 573
BspPI GGATC 2 cut(s) 299, 412
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 54, 95
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 3 cut(s) 304, 417, 495
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 3 cut(s) 149, 172, 299
BstDEI CTNAG 1 cut(s) 464
BstDSI CCRYGG 1 cut(s) 241
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 3 cut(s) 307, 420, 498
BstMBI GATC 3 cut(s) 304, 417, 495
BstNI CCWGG 3 cut(s) 149, 172, 299
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 3 cut(s) 147, 170, 297
BstSFI CTRYAG 1 cut(s) 569
BstV1I GCAGC 2 cut(s) 175, 555
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
BsuRI GGCC 2 cut(s) 380, 395
BtgI CCRYGG 1 cut(s) 241
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 3 cut(s) 52, 100, 174
Csp6I GTAC 1 cut(s) 58
CviAII CATG 7 cut(s) 61, 242, 254, 265, 313, 539, 557
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 464
DpnI GATC 3 cut(s) 306, 419, 497
DpnII GATC 3 cut(s) 304, 417, 495
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 3 cut(s) 52, 100, 174
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 100
EcoRII CCWGG 3 cut(s) 147, 170, 297
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 7 cut(s) 64, 245, 257, 268, 316, 542, 560
FaqI GGGAC 2 cut(s) 38, 59
FatI CATG 7 cut(s) 60, 241, 253, 264, 312, 538, 556
Fnu4HI GCNGC 2 cut(s) 164, 569
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 164, 569
FspBI CTAG 1 cut(s) 598
GluI GCNGC 2 cut(s) 164, 569
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 2 cut(s) 380, 395
HapII CCGG 1 cut(s) 123
Hin1II CATG 7 cut(s) 64, 245, 257, 268, 316, 542, 560
HinfI GANTC 2 cut(s) 374, 589
HpaII CCGG 1 cut(s) 123
HphI GGTGA 4 cut(s) 130, 160, 284, 535
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 130, 477
Hpy188III TCNNGA 1 cut(s) 586
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 4 cut(s) 58, 91, 364, 541
HpyCH4IV ACGT 2 cut(s) 72, 527
HpyCH4V TGCA 3 cut(s) 163, 401, 571
HpyF3I CTNAG 1 cut(s) 464
HpySE526I ACGT 2 cut(s) 72, 527
Hsp92II CATG 7 cut(s) 64, 245, 257, 268, 316, 542, 560
Kzo9I GATC 3 cut(s) 304, 417, 495
LmnI GCTCC 3 cut(s) 4, 131, 455
Lsp1109I GCAGC 2 cut(s) 175, 555
LweI GCATC 2 cut(s) 150, 467
MaeI CTAG 1 cut(s) 598
MaeII ACGT 2 cut(s) 72, 527
MaeIII GTNAC 4 cut(s) 523, 534, 541, 586
MalI GATC 3 cut(s) 306, 419, 497
MboI GATC 3 cut(s) 304, 417, 495
MboII GAAGA 2 cut(s) 418, 505
MfeI CAATTG 2 cut(s) 218, 402
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 5 cut(s) 218, 402, 409, 438, 479
MlyI GAGTC 1 cut(s) 583
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 8 cut(s) 25, 29, 122, 146, 152, 484, 514, 553
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 3 cut(s) 149, 172, 299
MunI CAATTG 2 cut(s) 218, 402
MvaI CCWGG 3 cut(s) 149, 172, 299
NcoI CCATGG 1 cut(s) 241
NdeII GATC 3 cut(s) 304, 417, 495
NlaIII CATG 7 cut(s) 64, 245, 257, 268, 316, 542, 560
NlaIV GGNNCC 4 cut(s) 54, 102, 127, 176
NmuCI GTSAC 2 cut(s) 523, 586
NspI RCATGY 1 cut(s) 542
PciI ACATGT 1 cut(s) 538
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 165, 570
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 100
PscI ACATGT 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 100
Psp6I CCWGG 3 cut(s) 147, 170, 297
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 3 cut(s) 147, 170, 297
PspN4I GGNNCC 4 cut(s) 54, 102, 127, 176
PspPI GGNCC 3 cut(s) 52, 100, 174
PspPPI RGGWCCY 1 cut(s) 100
PstI CTGCAG 1 cut(s) 573
PsuI RGATCY 1 cut(s) 495
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SatI GCNGC 2 cut(s) 164, 569
Sau3AI GATC 3 cut(s) 304, 417, 495
Sau96I GGNCC 3 cut(s) 52, 100, 174
SchI GAGTC 1 cut(s) 583
ScrFI CCNGG 3 cut(s) 149, 172, 299
SduI GDGCHC 1 cut(s) 135
SfaNI GCATC 2 cut(s) 150, 467
SfcI CTRYAG 1 cut(s) 569
SinI GGWCC 3 cut(s) 52, 100, 174
Sse9I AATT 5 cut(s) 218, 402, 409, 438, 479
SspMI CTAG 1 cut(s) 598
StyD4I CCNGG 3 cut(s) 147, 170, 297
StyI CCWWGG 1 cut(s) 241
TaiI ACGT 2 cut(s) 75, 530
TaqI TCGA 1 cut(s) 144
TasI AATT 5 cut(s) 218, 402, 409, 438, 479
TfiI GAWTC 1 cut(s) 374
TseFI GTSAC 2 cut(s) 523, 586
TseI GCWGC 2 cut(s) 163, 568
Tsp45I GTSAC 2 cut(s) 523, 586
TspDTI ATGAA 4 cut(s) 77, 110, 190, 305
TspGWI ACGGA 1 cut(s) 419
VpaK11BI GGWCC 3 cut(s) 52, 100, 174
XagI CCTNNNNNAGG 1 cut(s) 146
XapI RAATTY 1 cut(s) 409
XceI RCATGY 1 cut(s) 542
XspI CTAG 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.