Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013129

Physical Location & Seq

Genomic Coordinates Forward (+)

4908283 .. 4909601

Gene Structure 1319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCTTTTTGCACCACCATGCACTCACCACCGCCGCTTCTGCCCGGTCCTCATCGTCGGCACAGCGCCAAGTGGTGAACATCAACAAGCACAACCAGGTTGTGCCGATCGATCTGCCGGGCCCAGAAGCAGGCAGCCGGCCAGGAAGAAGAGAGCGGTGCTAACGTCTCACGGCGGTTGGCTCTCACAGTCCTCATCGGCGCTGCAGCCCTTGGCTCCAAGGTTTCCCCTGCTGATGCAGCTTATGGTGAATCGGCGTACCAATGTCTTCGGAAAGCCAAAGTCGAACACAGACTTCTTGCCATACGTTGGAGAGGGATTCAAGCTATCCATTCCTGCAAAATGGAGCCGTAGCAAAGAGGTTGAGTACCCTGGTCAAGTCCTTAGGTACGAGGACAACTTCGACAGCAACAGCAATGTGGCCGTCACAATCACCCCAACCGACAAGAAATCCATCGCCGACTATGGCTCCCCCGAGGAATTCCTCACGAAGGTGGACTACTTGCTAGGCAAACAAGCCTACTTTGGCAAGACTGAATCCGAGGGTGGTTTCGATCCGGGTGCTGTGGCCACAGCCAACATATTGGAGAGTTCTAGCCGAGTGGTTGACGGAAAGCAGTACTACTACATATCTGTGTTGACAAGGACAGCCGACGGAGATGAAGGAGGCAAGCACCAGCTTATCACAGCCACCGTGAAAGACGGCAAACTCTACATTCTAAAGGCACAAGCCGGAGACAAGAGGTGGTTCAAAGGAGCAAGGAAGTTTGTAGAGAGCACTGCAAGTTCTTTTAGTGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0019898 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

268

Amino Acids

29.3

Weight (kDa)

9.53

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	98 - 266	7.3e-39	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06680 AT1G06680
fragaria_vesca	FvH4_6g38900
malus_domestica	MD09G1146300.v1.1 MD17G1132900.v1.1
prunus_persica	Prupe.3G179400_v2.0.a1
pyrus_communis	pycom09g06660 pycom17g12650
rosa_chinensis	RchiOBHm_Chr2g0152481
rosa_laevigata	RLG00000020637
rosa_multiflora	Rmu_co8478837.1_g000001 Rmu_sc0005366.1_g000010
rosa_roxburghii	Rroxscaffold_2G00095680
rosa_rugosa	Rorug02G0433100
rosa_samantha	Rh2AG494900 Rh2BG507100 Rh2DG518300
rosa_wichuraiana	Rw2G040730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccBSI	CCGCTC	1 cut(s)	155
AciI	CCGC	4 cut(s)	31, 34, 155, 174
AclWI	GGATC	1 cut(s)	548
AcoI	YGGCCR	3 cut(s)	138, 420, 567
AcsI	RAATTY	1 cut(s)	479
AfaI	GTAC	4 cut(s)	259, 368, 389, 620
AfiI	CCNNNNNNNGG	3 cut(s)	129, 308, 490
AgsI	TTSAA	2 cut(s)	322, 751
AjnI	CCWGG	3 cut(s)	94, 140, 370
AleI	CACNNNNGTG	1 cut(s)	491
AluBI	AGCT	3 cut(s)	241, 325, 679
AluI	AGCT	3 cut(s)	241, 325, 679
Alw21I	GWGCWC	1 cut(s)	779
Alw26I	GTCTC	2 cut(s)	171, 729
AlwI	GGATC	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	4 cut(s)	119, 138, 420, 567
ApaI	GGGCCC	1 cut(s)	123
ApeKI	GCWGC	4 cut(s)	133, 202, 205, 238
ApoI	RAATTY	1 cut(s)	479
AspLEI	GCGC	2 cut(s)	67, 202
AspS9I	GGNCC	3 cut(s)	46, 119, 120
AsuC2I	CCSGG	3 cut(s)	44, 118, 558
AsuHPI	GGTGA	4 cut(s)	17, 86, 259, 424
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	123
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	779
BbvI	GCAGC	4 cut(s)	145, 189, 217, 250
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	4 cut(s)	187, 333, 407, 718
BcgI	CGANNNNNNTGC	4 cut(s)	95, 129, 542, 576
BciT130I	CCWGG	3 cut(s)	96, 142, 372
BcnI	CCSGG	3 cut(s)	44, 118, 558
BcoDI	GTCTC	2 cut(s)	171, 729
BfaI	CTAG	2 cut(s)	506, 594
BfmI	CTRYAG	1 cut(s)	203
BfoI	RGCGCY	2 cut(s)	68, 203
BisI	GCNGC	5 cut(s)	34, 134, 203, 206, 239
BlsI	GCNGC	5 cut(s)	35, 135, 204, 207, 240
BmcAI	AGTACT	1 cut(s)	620
Bme1390I	CCNGG	6 cut(s)	44, 96, 118, 142, 372, 558
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	3 cut(s)	46, 119, 120
BmiI	GGNNCC	4 cut(s)	121, 216, 347, 469
BmrFI	CCNGG	6 cut(s)	44, 96, 118, 142, 372, 558
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	259
BpuMI	CCSGG	3 cut(s)	44, 118, 558
Bsa29I	ATCGAT	1 cut(s)	109
BsaJI	CCNNGG	5 cut(s)	210, 218, 370, 474, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 308, 490
Bse118I	RCCGGY	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	421
BseBI	CCWGG	3 cut(s)	96, 142, 372
BseCI	ATCGAT	1 cut(s)	109
BseDI	CCNNGG	5 cut(s)	210, 218, 370, 474, 540
BseLI	CCNNNNNNNGG	3 cut(s)	129, 308, 490
BseMI	GCAATG	1 cut(s)	421
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	4 cut(s)	145, 189, 217, 250
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	4 cut(s)	121, 140, 422, 569
BshVI	ATCGAT	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	779
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	5 cut(s)	44, 117, 137, 557, 732
BslI	CCNNNNNNNGG	3 cut(s)	129, 308, 490
BsmAI	GTCTC	2 cut(s)	171, 729
BsmBI	CGTCTC	1 cut(s)	171
BsnI	GGCC	4 cut(s)	121, 140, 422, 569
BsoBI	CYCGRG	1 cut(s)	473
Bsp120I	GGGCCC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	123, 779
Bsp143I	GATC	3 cut(s)	106, 110, 553
BspACI	CCGC	4 cut(s)	31, 34, 155, 174
BspANI	GGCC	4 cut(s)	121, 140, 422, 569
BspDI	ATCGAT	1 cut(s)	109
BspLI	GGNNCC	4 cut(s)	121, 216, 347, 469
BspMAI	CTGCAG	1 cut(s)	207
BspPI	GGATC	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	5 cut(s)	210, 218, 370, 474, 540
BssMI	GATC	3 cut(s)	106, 110, 553
BssT1I	CCWWGG	2 cut(s)	210, 218
Bst2UI	CCWGG	3 cut(s)	96, 142, 372
Bst4CI	ACNGT	2 cut(s)	189, 694
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	131, 138, 671
BstDEI	CTNAG	1 cut(s)	383
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstH2I	RGCGCY	2 cut(s)	68, 203
BstHHI	GCGC	2 cut(s)	67, 202
BstKTI	GATC	3 cut(s)	109, 113, 556
BstMAI	GTCTC	2 cut(s)	171, 729
BstMBI	GATC	3 cut(s)	106, 110, 553
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 238
BstNI	CCWGG	3 cut(s)	96, 142, 372
BstSCI	CCNGG	6 cut(s)	42, 94, 116, 140, 370, 556
BstSFI	CTRYAG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	145, 189, 217, 250
BstV2I	GAAGAC	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	583
Bsu15I	ATCGAT	1 cut(s)	109
Bsu36I	CCTNAGG	1 cut(s)	383
BsuRI	GGCC	4 cut(s)	121, 140, 422, 569
BsuTUI	ATCGAT	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	777
Cac8I	GCNNGC	3 cut(s)	131, 138, 671
CfoI	GCGC	2 cut(s)	67, 202
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	46, 119, 120
ClaI	ATCGAT	1 cut(s)	109
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	4 cut(s)	258, 367, 388, 619
CviAII	CATG	1 cut(s)	18
CviQI	GTAC	4 cut(s)	258, 367, 388, 619
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	3 cut(s)	108, 112, 555
DpnII	GATC	3 cut(s)	106, 110, 553
EaeI	YGGCCR	3 cut(s)	138, 420, 567
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	210, 218
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	3 cut(s)	94, 140, 370
EcoT14I	CCWWGG	2 cut(s)	210, 218
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	2 cut(s)	210, 218
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	1 cut(s)	21
FaiI	YATR	7 cut(s)	19, 245, 304, 465, 581, 629, 802
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	5 cut(s)	34, 134, 203, 206, 239
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	5 cut(s)	34, 134, 203, 206, 239
FspBI	CTAG	2 cut(s)	506, 594
GlaI	GCGC	2 cut(s)	66, 201
GluI	GCNGC	5 cut(s)	34, 134, 203, 206, 239
HaeII	RGCGCY	2 cut(s)	68, 203
HaeIII	GGCC	4 cut(s)	121, 140, 422, 569
HapII	CCGG	5 cut(s)	44, 117, 137, 557, 732
HhaI	GCGC	2 cut(s)	67, 202
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	2 cut(s)	65, 200
HinP1I	GCGC	2 cut(s)	65, 200
HincII	GTYRAC	2 cut(s)	607, 639
HindII	GTYRAC	2 cut(s)	607, 639
HinfI	GANTC	3 cut(s)	250, 318, 536
HpaII	CCGG	5 cut(s)	44, 117, 137, 557, 732
HphI	GGTGA	4 cut(s)	17, 86, 259, 424
Hpy166II	GTNNAC	4 cut(s)	77, 496, 607, 639
Hpy188I	TCNGA	2 cut(s)	272, 541
Hpy188III	TCNNGA	1 cut(s)	487
Hpy8I	GTNNAC	4 cut(s)	77, 496, 607, 639
Hpy99I	CGWCG	2 cut(s)	59, 656
HpyAV	CCTTC	2 cut(s)	484, 656
HpyCH4III	ACNGT	2 cut(s)	189, 694
HpyCH4IV	ACGT	2 cut(s)	164, 306
HpyCH4V	TGCA	7 cut(s)	11, 21, 205, 238, 338, 782, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 238
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	2 cut(s)	164, 306
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	2 cut(s)	65, 200
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	106, 110, 553
LmnI	GCTCC	4 cut(s)	220, 345, 473, 755
Lsp1109I	GCAGC	4 cut(s)	145, 189, 217, 250
LweI	GCATC	1 cut(s)	225
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	2 cut(s)	506, 594
MaeII	ACGT	2 cut(s)	164, 306
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	3 cut(s)	108, 112, 555
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	3 cut(s)	106, 110, 553
MboII	GAAGA	3 cut(s)	157, 160, 259
MhlI	GDGCHC	2 cut(s)	123, 779
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	1 cut(s)	479
MluNI	TGGCCA	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	289
Mox20I	TGGCCA	1 cut(s)	569
MroNI	GCCGGC	1 cut(s)	136
MscI	TGGCCA	1 cut(s)	569
MslI	CAYNNNNRTG	3 cut(s)	16, 491, 632
Msp20I	TGGCCA	1 cut(s)	569
MspI	CCGG	5 cut(s)	44, 117, 137, 557, 732
MspR9I	CCNGG	6 cut(s)	44, 96, 118, 142, 372, 558
MvaI	CCWGG	3 cut(s)	96, 142, 372
MwoI	GCNNNNNNNGC	2 cut(s)	39, 238
NaeI	GCCGGC	1 cut(s)	138
NciI	CCSGG	3 cut(s)	44, 118, 558
NdeII	GATC	3 cut(s)	106, 110, 553
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	4 cut(s)	121, 216, 347, 469
NmeAIII	GCCGAG	1 cut(s)	623
NmuCI	GTSAC	1 cut(s)	424
OliI	CACNNNNGTG	1 cut(s)	491
PdiI	GCCGGC	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	250, 318, 536
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	5 cut(s)	35, 135, 204, 207, 240
Ple19I	CGATCG	1 cut(s)	109
Psp6I	CCWGG	3 cut(s)	94, 140, 370
PspGI	CCWGG	3 cut(s)	94, 140, 370
PspN4I	GGNNCC	4 cut(s)	121, 216, 347, 469
PspOMI	GGGCCC	1 cut(s)	119
PspPI	GGNCC	3 cut(s)	46, 119, 120
PstI	CTGCAG	1 cut(s)	207
PvuI	CGATCG	1 cut(s)	109
RsaI	GTAC	4 cut(s)	259, 368, 389, 620
RsaNI	GTAC	4 cut(s)	258, 367, 388, 619
RseI	CAYNNNNRTG	3 cut(s)	16, 491, 632
SatI	GCNGC	5 cut(s)	34, 134, 203, 206, 239
Sau3AI	GATC	3 cut(s)	106, 110, 553
Sau96I	GGNCC	3 cut(s)	46, 119, 120
ScaI	AGTACT	1 cut(s)	620
ScrFI	CCNGG	6 cut(s)	44, 96, 118, 142, 372, 558
SduI	GDGCHC	2 cut(s)	123, 779
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	3 cut(s)	16, 491, 632
Sse9I	AATT	1 cut(s)	479
SsiI	CCGC	4 cut(s)	31, 34, 155, 174
SspMI	CTAG	2 cut(s)	506, 594
StyD4I	CCNGG	6 cut(s)	42, 94, 116, 140, 370, 556
StyI	CCWWGG	2 cut(s)	210, 218
TaaI	ACNGT	2 cut(s)	189, 694
TaiI	ACGT	2 cut(s)	167, 309
TaqI	TCGA	4 cut(s)	109, 284, 402, 552
TasI	AATT	1 cut(s)	479
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	3 cut(s)	250, 318, 536
TscAI	CASTG	1 cut(s)	784
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	133, 202, 205, 238
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	1 cut(s)	675
TspGWI	ACGGA	2 cut(s)	624, 669
TspRI	CASTG	1 cut(s)	784
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	46
XagI	CCTNNNNNAGG	1 cut(s)	488
XapI	RAATTY	1 cut(s)	479
XspI	CTAG	2 cut(s)	506, 594
ZrmI	AGTACT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.