Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0012707

Physical Location & Seq

Genomic Coordinates Forward (+)

7126546 .. 7128163

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTCCTCCATTCCCAACTCAATCAGTTCCCTCTCTTGTCCTCCGTGTTCTAAATTTTGTGCCCATTTTCTCACTTCCCAGTTCCGACAGGCTTTTTCGAAAATGGCCAACATCAAAGAGTTTTTAGCCAGAATGTCCGAATCAGGCAAAAAATTATCCACAAACAAGAAAAACAAGAAGCTCTTCATAACCCTTTTCGCAACCATCCTACTCGTGGGCGCCGTCATCGGCATTGTCACCGGAGTAAAGTCCTCCAAAAACAACTCCGACGACGAAACCATCGAGGCCTCCCACGCCATAGTCAAATTCTCATGCAGCTCCACCCTCTACCCTGATCTGTGCTTTTCAACTCTTGCCCTTCACCCGGAAGCCTCCAAAAAGGTTTCGAGCCAGAAGGACGTGATAGAATTGTCACTGAACATCACGACCACGGCGGTGCAGCACATCTTCTTCACCGTCGAGAAGCTGCTGAAGTCCAGGAAGAATAAGCTCACTAAGCGTGAGAAGGGCGCTCTCCACGACTGTTTGGAGACCATTGACGAAACCATCGACGAGCTCCACGAGGCTGTTGAGGATCTCCTTGATTACCCTAATAAGAAGACTTTGGTTCAGCATGCCGATGACCTTAAAACTTTGATAAGCTCCGCCATTACCAACCAAGAAACTTGCCTTGATGGGTTCTCGCATGATGGAGCTGATAAGAAAGTTAGGAAAGTTTTGTTGGCTGGTGAGGAACACATAGAAAAATTGTGCAGTAATGTACTGGCCATGATCAAGAACATGACCGATACCGACATTGCAAACGAGATGAAAATGAATGTGAACCGAAAACTCAAGGAGGATGTGGTGGACGAGCACGGCTGGCCGGAGTGGCTGTCGGTGGCGGACAGGCGACTGCTGCAGTCGTCTTCTGTTACGCCGAATGTGGTGGTGGCAGCAGACGGCACTGGGAACTACAAGACGGTGTCGGAAGCGGTGGCTGCTGCCCCAGAGAAGAGTAGTAGCAGATACGTGATTAAAATAAAGGCGGGGGTTTATAGAGAAAATGTCGAAGTGCCAAAGAAAAAGACCAACATTATGTTTTTGGGAGAAGGGAGGGTAAACACCATCATCACTGCTAGTAGAAATGTGGTCGATGGCAGCACAACTTTCAACTCAGCCACAGTTGGTAAGTCCAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

395

Amino Acids

43.35

Weight (kDa)

8.61

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	100 - 257	2.9e-36	Plant invertase/pectin methylesterase inhibitor
Pectinesterase	PF01095	308 - 390	1.9e-29	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53830 AT3G14310
fragaria_vesca	FvH4_6g35830
malus_domestica	MD09G1172600.v1.1 MD17G1154500.v1.1
prunus_persica	Prupe.3G031000_v2.0.a1
pyrus_communis	pycom09g09010 pycom09g09020
rosa_chinensis	RchiOBHm_Chr2g0147881
rosa_laevigata	RLG00000020287
rosa_multiflora	Rmu_sc0000308.1_g000057
rosa_roxburghii	Rroxscaffold_2G00099240
rosa_rugosa	Rorug02G0402600
rosa_samantha	Rh2AG459500 Rh2BG472900 Rh2CG446900 Rh2DG481800
rosa_wichuraiana	Rw2G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	5 cut(s)	434, 645, 884, 974, 1028
AclWI	GGATC	1 cut(s)	582
AcoI	YGGCCR	3 cut(s)	105, 765, 863
AcsI	RAATTY	2 cut(s)	53, 305
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	762
AfiI	CCNNNNNNNGG	2 cut(s)	214, 364
AgsI	TTSAA	2 cut(s)	348, 1153
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	476
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	7 cut(s)	181, 318, 466, 490, 556, 642, 695
AluI	AGCT	7 cut(s)	181, 318, 466, 490, 556, 642, 695
Alw21I	GWGCWC	2 cut(s)	558, 858
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	582
AoxI	GGCC	4 cut(s)	105, 285, 765, 863
ApeKI	GCWGC	8 cut(s)	315, 439, 466, 898, 935, 980, 983, 1140
ApoI	RAATTY	2 cut(s)	53, 305
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	221, 512
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	4 cut(s)	229, 353, 445, 740
AsuII	TTCGAA	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	64
BalI	TGGCCA	2 cut(s)	107, 767
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	558
BauI	CACGAG	2 cut(s)	212, 560
BbsI	GAAGAC	2 cut(s)	605, 900
Bbv12I	GWGCWC	2 cut(s)	558, 858
BbvI	GCAGC	8 cut(s)	327, 451, 453, 885, 947, 967, 970, 1152
BccI	CCATC	7 cut(s)	212, 287, 554, 668, 683, 1115, 1130
BceAI	ACGGC	4 cut(s)	206, 447, 874, 958
BciT130I	CCWGG	1 cut(s)	478
BclI	TGATCA	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	1 cut(s)	1119
BfmI	CTRYAG	1 cut(s)	899
BfoI	RGCGCY	2 cut(s)	222, 513
BglI	GCCNNNNNGGC	1 cut(s)	871
BisI	GCNGC	8 cut(s)	316, 440, 467, 899, 936, 981, 984, 1141
BlsI	GCNGC	8 cut(s)	317, 441, 468, 900, 937, 982, 985, 1142
Bme1390I	CCNGG	2 cut(s)	365, 478
BmgBI	CACGTC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	365, 478
BmrI	ACTGGG	2 cut(s)	73, 957
BmuI	ACTGGG	2 cut(s)	73, 957
BpiI	GAAGAC	2 cut(s)	605, 900
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	818
BpuMI	CCSGG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	1012
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	860, 890
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 364
Bse1I	ACTGG	3 cut(s)	79, 768, 952
Bse3DI	GCAATG	1 cut(s)	795
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	204, 847
BseLI	CCNNNNNNNGG	2 cut(s)	214, 364
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	1 cut(s)	1170
BseNI	ACTGG	3 cut(s)	79, 768, 952
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	8 cut(s)	327, 451, 453, 885, 947, 967, 970, 1152
BsgI	GTGCAG	2 cut(s)	458, 772
BshFI	GGCC	4 cut(s)	107, 287, 767, 865
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	2 cut(s)	558, 858
BsiSI	CCGG	3 cut(s)	240, 365, 866
BslI	CCNNNNNNNGG	2 cut(s)	214, 364
BsmAI	GTCTC	1 cut(s)	524
BsnI	GGCC	4 cut(s)	107, 287, 767, 865
Bso31I	GGTCTC	1 cut(s)	524
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	64, 558, 858
Bsp143I	GATC	3 cut(s)	334, 574, 771
BspACI	CCGC	5 cut(s)	434, 645, 884, 974, 1028
BspANI	GGCC	4 cut(s)	107, 287, 767, 865
BspCNI	CTCAG	1 cut(s)	1169
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	903
BspPI	GGATC	1 cut(s)	582
BspQI	GCTCTTC	1 cut(s)	188
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	795
BsrI	ACTGG	3 cut(s)	79, 768, 952
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	3 cut(s)	334, 574, 771
BssNI	GRCGYC	1 cut(s)	219
BssSI	CACGAG	2 cut(s)	212, 560
Bst2BI	CACGAG	2 cut(s)	212, 560
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	4 cut(s)	457, 524, 964, 1165
Bst6I	CTCTTC	2 cut(s)	188, 989
BstACI	GRCGYC	1 cut(s)	219
BstBAI	YACGTR	1 cut(s)	1012
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	615, 863
BstDEI	CTNAG	2 cut(s)	495, 1156
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	204, 847
BstH2I	RGCGCY	2 cut(s)	222, 513
BstHHI	GCGC	2 cut(s)	221, 512
BstKTI	GATC	3 cut(s)	337, 577, 774
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	3 cut(s)	334, 574, 771
BstMWI	GCNNNNNNNGC	6 cut(s)	293, 496, 862, 871, 898, 980
BstNI	CCWGG	1 cut(s)	478
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	363, 476
BstSFI	CTRYAG	1 cut(s)	899
BstSLI	GKGCMC	1 cut(s)	64
BstV1I	GCAGC	8 cut(s)	327, 451, 453, 885, 947, 967, 970, 1152
BstV2I	GAAGAC	2 cut(s)	605, 900
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	4 cut(s)	107, 287, 767, 865
BtgI	CCRYGG	1 cut(s)	429
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	204, 847
BtsI	GCAGTG	1 cut(s)	1113
BtsIMutI	CAGTG	3 cut(s)	413, 945, 1113
Cac8I	GCNNGC	2 cut(s)	615, 863
CfoI	GCGC	2 cut(s)	221, 512
Csp6I	GTAC	1 cut(s)	761
CviAII	CATG	5 cut(s)	312, 614, 686, 769, 781
CviQI	GTAC	1 cut(s)	761
DdeI	CTNAG	2 cut(s)	495, 1156
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	3 cut(s)	336, 576, 773
DpnII	GATC	3 cut(s)	334, 574, 771
EaeI	YGGCCR	3 cut(s)	105, 765, 863
Eam1104I	CTCTTC	2 cut(s)	188, 989
EarI	CTCTTC	2 cut(s)	188, 989
EciI	GGCGGA	2 cut(s)	634, 899
Ecl136II	GAGCTC	1 cut(s)	556
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	524
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	476
EcoT38I	GRGCYC	1 cut(s)	558
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
FaeI	CATG	5 cut(s)	315, 617, 689, 772, 784
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	5 cut(s)	311, 613, 685, 768, 780
FauI	CCCGC	1 cut(s)	1021
FbaI	TGATCA	1 cut(s)	771
Fnu4HI	GCNGC	8 cut(s)	316, 440, 467, 899, 936, 981, 984, 1141
FokI	GGATG	2 cut(s)	191, 854
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	8 cut(s)	316, 440, 467, 899, 936, 981, 984, 1141
FspBI	CTAG	1 cut(s)	1119
GlaI	GCGC	2 cut(s)	220, 511
GluI	GCNGC	8 cut(s)	316, 440, 467, 899, 936, 981, 984, 1141
HaeII	RGCGCY	2 cut(s)	222, 513
HaeIII	GGCC	4 cut(s)	107, 287, 767, 865
HapII	CCGG	3 cut(s)	240, 365, 866
HhaI	GCGC	2 cut(s)	221, 512
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	5 cut(s)	315, 617, 689, 772, 784
Hin6I	GCGC	2 cut(s)	219, 510
HinP1I	GCGC	2 cut(s)	219, 510
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	3 cut(s)	240, 365, 866
HphI	GGTGA	4 cut(s)	229, 353, 445, 740
Hpy166II	GTNNAC	3 cut(s)	823, 850, 1102
Hpy188I	TCNGA	4 cut(s)	86, 139, 268, 970
Hpy188III	TCNNGA	3 cut(s)	424, 460, 775
Hpy8I	GTNNAC	3 cut(s)	823, 850, 1102
Hpy99I	CGWCG	4 cut(s)	272, 275, 461, 554
HpyAV	CCTTC	4 cut(s)	368, 388, 499, 1085
HpyCH4III	ACNGT	4 cut(s)	457, 524, 964, 1165
HpyCH4IV	ACGT	2 cut(s)	399, 1011
HpyCH4V	TGCA	5 cut(s)	315, 439, 753, 800, 901
HpyF10VI	GCNNNNNNNGC	6 cut(s)	293, 496, 862, 871, 898, 980
HpyF3I	CTNAG	2 cut(s)	495, 1156
HpySE526I	ACGT	2 cut(s)	399, 1011
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	5 cut(s)	315, 617, 689, 772, 784
HspAI	GCGC	2 cut(s)	219, 510
KasI	GGCGCC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	771
Kzo9I	GATC	3 cut(s)	334, 574, 771
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	4 cut(s)	323, 561, 647, 692
Lsp1109I	GCAGC	8 cut(s)	327, 451, 453, 885, 947, 967, 970, 1152
MaeI	CTAG	1 cut(s)	1119
MaeII	ACGT	2 cut(s)	399, 1011
MaeIII	GTNAC	3 cut(s)	235, 411, 913
MalI	GATC	3 cut(s)	336, 576, 773
MboI	GATC	3 cut(s)	334, 574, 771
MboII	GAAGA	7 cut(s)	175, 439, 442, 493, 610, 900, 1006
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	3 cut(s)	64, 558, 858
MlsI	TGGCCA	2 cut(s)	107, 767
MluCI	AATT	6 cut(s)	53, 152, 305, 407, 746, 1177
MluNI	TGGCCA	2 cut(s)	107, 767
Mly113I	GGCGCC	1 cut(s)	219
MmeI	TCCRAC	3 cut(s)	109, 291, 948
Mox20I	TGGCCA	2 cut(s)	107, 767
MroXI	GAANNNNTTC	1 cut(s)	182
MscI	TGGCCA	2 cut(s)	107, 767
MseI	TTAA	3 cut(s)	627, 1017, 1183
MslI	CAYNNNNRTG	2 cut(s)	434, 618
Msp20I	TGGCCA	2 cut(s)	107, 767
MspI	CCGG	3 cut(s)	240, 365, 866
MspR9I	CCNGG	2 cut(s)	365, 478
MvaI	CCWGG	1 cut(s)	478
MwoI	GCNNNNNNNGC	6 cut(s)	293, 496, 862, 871, 898, 980
NarI	GGCGCC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	3 cut(s)	334, 574, 771
NlaIII	CATG	5 cut(s)	315, 617, 689, 772, 784
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	235, 411
NspI	RCATGY	1 cut(s)	617
NspV	TTCGAA	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	617
PceI	AGGCCT	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	4 cut(s)	219, 279, 546, 558
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	964
PfoI	TCCNGGA	1 cut(s)	476
PkrI	GCNGC	8 cut(s)	317, 441, 468, 900, 937, 982, 985, 1142
PluTI	GGCGCC	1 cut(s)	222
Ppu21I	YACGTR	1 cut(s)	1012
Psp124BI	GAGCTC	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	903
PsuI	RGATCY	1 cut(s)	574
PsyI	GACNNNGTC	1 cut(s)	964
RsaI	GTAC	1 cut(s)	762
RsaNI	GTAC	1 cut(s)	761
RseI	CAYNNNNRTG	2 cut(s)	434, 618
SacI	GAGCTC	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	627, 1017, 1183
SatI	GCNGC	8 cut(s)	316, 440, 467, 899, 936, 981, 984, 1141
Sau3AI	GATC	3 cut(s)	334, 574, 771
ScrFI	CCNGG	2 cut(s)	365, 478
SduI	GDGCHC	3 cut(s)	64, 558, 858
SfcI	CTRYAG	1 cut(s)	899
SfoI	GGCGCC	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	434, 618
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SphI	GCATGC	1 cut(s)	617
Sse9I	AATT	6 cut(s)	53, 152, 305, 407, 746, 1177
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	5 cut(s)	434, 645, 884, 974, 1028
SspDI	GGCGCC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	1119
SstI	GAGCTC	1 cut(s)	558
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	363, 476
TaaI	ACNGT	4 cut(s)	457, 524, 964, 1165
TaiI	ACGT	2 cut(s)	402, 1014
TaqI	TCGA	7 cut(s)	98, 282, 386, 459, 549, 1050, 1134
TaqII	GACCGA	1 cut(s)	800
TasI	AATT	6 cut(s)	53, 152, 305, 407, 746, 1177
TatI	WGTACW	1 cut(s)	760
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	627, 1017, 1183
Tru9I	TTAA	3 cut(s)	627, 1017, 1183
TscAI	CASTG	3 cut(s)	420, 952, 1120
TseFI	GTSAC	2 cut(s)	235, 411
TseI	GCWGC	8 cut(s)	315, 439, 466, 898, 935, 980, 983, 1140
Tsp45I	GTSAC	2 cut(s)	235, 411
TspDTI	ATGAA	3 cut(s)	175, 824, 830
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	3 cut(s)	420, 952, 1120
Tth111I	GACNNNGTC	1 cut(s)	964
XapI	RAATTY	2 cut(s)	53, 305
XceI	RCATGY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.