pycom09g11850

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
10023494 .. 10025347
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11850.1

Sequence Viewer

Length: 1704 bp
ATGGAGGTAAAATCTTCTGACAAGGAATGGAGGAGGATTCCTTCATCGACACCCCCAAAGCGTCCTCTAACCCCAAAGCCCTCTGCATCTGACGAAAACGATCAATATTATCAGCAAGTGGGCAACTCCAATCAGCAGAGCCCCAAGAAACCTCTGACAAAGAACTACATGTCACCAACCATATCTGCAGCTTCCAAATCTAATGCCACTGCTTCAAGAAAGAACATCTTAAGGGAAAGAAACGACGCCTCCCAACCCGATTTTTCAAATATCCATGTTGAAAAATCGCAGAGCCCCAAGAAACCATCGACAAAGAACAACATGTCACCAACCATATCCATATCTGCAGCTTCCAAAAGCAGGGCCCTTGCTTCAAGAAAGAACATCTTAGGGGAAAGAAAGGAGGCCTCCGAACCAGATTTTTCGAATACCCATGTTGAAAAATCCCATATAGCTATTGATAATGTTAATCATTCTTTGTCTCAAGCCTTGCCAAAATCCCCTCCAAGTTTTCAATCCCATGATGCTGATGAGGCTCTTTCCAATGATTTGGCTTCAAGGCCATATGACCCGGTAACCAATTACCTTTCTCCGAGGCCTCGGTTCCTCCGCTACAAGCCCAACAGGCGGCAAGAGTTGTTTCTTGGCCTAGAAAATGGCGTTGGGTTCAGCACCAGTACAAGTGATTCTTTTGATTACCAGAAAGCCACTGGTGAGGAAGTTGGCGCTGTCACAAGTCCTAGTTCTTTGGCTTCACCTCGTCCAGATGGGTCTCTTAAGCAAGAAGATGAAGAAGTTGAGTTGAGTGATAGTGGTTCTTTTGATTACCAGAAAGCTACTGATGAGGAAGTTGGTGCTTTTACAAGTCCTGGTTCTTTGGCCTTGCCTCATCCGGATGGCTCTCTTAAGCAAGAAGATGAAGAAATTGAGTTGAATGATAGTCGTTCTTTTGATTACCAGAAAGCCACTGATGAGGAAGTTGGTGCTGTTACAAGTCCTGGTTCTTTGGCTTCGCCTCGTCCGGATGGGACTCTTAAGCAAGAAGATGAGGGAATTGAGTTGAGTGATGAAGACATTGAAGCAGGTGATGCAGAAGTTGAGGGGAGTGATGAGGAGGAATATGAGGAGGTTGAGGAAGAGAAGATCGGGAAATTGAAGGGGGTATTAAAAAGTTTGCTTCTTTTGTTGGCTATAGTTCTCCTTGCCTCGTATATGTCTCCAATGAACCATCAAACACACTTTGAAGGCATGGAAGATGCGTATTGCAGCATTCAGAACTCTACAATTGAAGCTGCTTTGTTGAAGAAACTTGAAAGCAGAGGTAATCTTTGGGACCAAAAAGAAGAAAGACATACGGGCTTTGTGGAAGTAATTAAAGGAGCTATTGAAATGGGGACCGAGGAGGTTATCGTTCAAGGAGAAGAGATGCAAATTGATGAAGATATTGAGGATGAAGCGAAGGTTGAAGATGAGAACTTGGGAGATGTAGAACTTGCTGATGAGATGAGAGAAGTGGTGAAGCCACAAGCTGAAGAAATTGAAGAAGAAAAGGAAGGAGGAATTCATGGTTTGGGTGAAGTAGTGGTGATGCCACAACTTGAAGATATTGAAGATATTTCTGGTGACATAGTTGAGAATTCTGAGTTGCAGGGTGTTGGACCATCCGTGTCTGATGATTTTGATCGATCAGAATTTAGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

568

Amino Acids

62.43

Weight (kDa)

4.46

Isoelectric Point (pI)

63.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1073
Acc36I ACCTGC 1 cut(s) 1073
AccIII TCCGGA 2 cut(s) 892, 1021
AciI CCGC 2 cut(s) 610, 628
AcsI RAATTY 3 cut(s) 1560, 1636, 1691
AcuI CTGAAG 1 cut(s) 1551
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 679
AfiI CCNNNNNNNGG 2 cut(s) 360, 627
AflII CTTAAG 4 cut(s) 229, 776, 905, 1034
AflIII ACRYGT 2 cut(s) 168, 321
AjnI CCWGG 2 cut(s) 868, 997
AjuI GAANNNNNNNTTGG 2 cut(s) 645, 677
AluBI AGCT 7 cut(s) 191, 350, 455, 836, 1292, 1382, 1529
AluI AGCT 7 cut(s) 191, 350, 455, 836, 1292, 1382, 1529
Alw26I GTCTC 3 cut(s) 486, 777, 1221
Aor13HI TCCGGA 2 cut(s) 892, 1021
AoxI GGCC 6 cut(s) 363, 405, 560, 596, 646, 879
ApaI GGGCCC 1 cut(s) 367
ApeKI GCWGC 4 cut(s) 188, 347, 1266, 1292
ApoI RAATTY 3 cut(s) 1560, 1636, 1691
AspLEI GCGC 1 cut(s) 728
AspS9I GGNCC 5 cut(s) 363, 364, 1333, 1395, 1658
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 9 cut(s) 165, 318, 725, 747, 1097, 1528, 1586, 1597, 1634
AsuII TTCGAA 1 cut(s) 425
AvaII GGWCC 3 cut(s) 1333, 1395, 1658
BaeGI GKGCMC 1 cut(s) 367
BanII GRGCYC 3 cut(s) 143, 296, 367
BbsI GAAGAC 1 cut(s) 1077
BbvI GCAGC 4 cut(s) 200, 359, 1278, 1279
BccI CCATC 6 cut(s) 313, 761, 890, 1019, 1236, 1669
BciT130I CCWGG 2 cut(s) 870, 999
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 3 cut(s) 486, 777, 1221
BfaI CTAG 2 cut(s) 650, 741
BfmI CTRYAG 3 cut(s) 186, 345, 1191
BfoI RGCGCY 1 cut(s) 729
BfrI CTTAAG 4 cut(s) 229, 776, 905, 1034
BfuAI ACCTGC 1 cut(s) 1073
BglI GCCNNNNNGGC 1 cut(s) 625
BisI GCNGC 5 cut(s) 189, 348, 629, 1267, 1293
BlsI GCNGC 5 cut(s) 190, 349, 630, 1268, 1294
Bme1390I CCNGG 3 cut(s) 572, 870, 999
Bme18I GGWCC 3 cut(s) 1333, 1395, 1658
BmgT120I GGNCC 5 cut(s) 363, 364, 1333, 1395, 1658
BmiI GGNNCC 4 cut(s) 365, 605, 1334, 1396
BmrFI CCNGG 3 cut(s) 572, 870, 999
BmsI GCATC 6 cut(s) 95, 514, 1078, 1246, 1416, 1578
BpiI GAAGAC 1 cut(s) 1077
Bpu14I TTCGAA 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 468
BpuMI CCSGG 1 cut(s) 572
Bsa29I ATCGAT 1 cut(s) 1684
BsaBI GATNNNNATC 1 cut(s) 1680
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 777
BsaJI CCNNGG 3 cut(s) 593, 599, 1398
BsaWI WCCGGW 2 cut(s) 892, 1021
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 627
Bse1I ACTGG 2 cut(s) 675, 715
Bse8I GATNNNNATC 1 cut(s) 1680
BseAI TCCGGA 2 cut(s) 892, 1021
BseBI CCWGG 2 cut(s) 870, 999
BseCI ATCGAT 1 cut(s) 1684
BseDI CCNNGG 3 cut(s) 593, 599, 1398
BseGI GGATG 5 cut(s) 889, 901, 1030, 1456, 1661
BseJI GATNNNNATC 1 cut(s) 1680
BseLI CCNNNNNNNGG 2 cut(s) 360, 627
BseMII CTCAG 1 cut(s) 1632
BseNI ACTGG 2 cut(s) 675, 715
BseRI GAGGAG 4 cut(s) 46, 1127, 1139, 1415
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 4 cut(s) 200, 359, 1278, 1279
BshFI GGCC 6 cut(s) 365, 407, 562, 598, 648, 881
BshVI ATCGAT 1 cut(s) 1684
BsiSI CCGG 3 cut(s) 572, 893, 1022
BslFI GGGAC 3 cut(s) 1042, 1346, 1408
BslI CCNNNNNNNGG 2 cut(s) 360, 627
BsmAI GTCTC 3 cut(s) 486, 777, 1221
BsmFI GGGAC 3 cut(s) 1042, 1346, 1408
BsmI GAATGC 1 cut(s) 1269
BsnI GGCC 6 cut(s) 365, 407, 562, 598, 648, 881
Bso31I GGTCTC 1 cut(s) 777
Bsp119I TTCGAA 1 cut(s) 425
Bsp120I GGGCCC 1 cut(s) 363
Bsp1286I GDGCHC 3 cut(s) 143, 296, 367
Bsp13I TCCGGA 2 cut(s) 892, 1021
Bsp143I GATC 4 cut(s) 100, 1143, 1681, 1685
BspACI CCGC 2 cut(s) 610, 628
BspANI GGCC 6 cut(s) 365, 407, 562, 598, 648, 881
BspCNI CTCAG 1 cut(s) 1633
BspDI ATCGAT 1 cut(s) 1684
BspEI TCCGGA 2 cut(s) 892, 1021
BspLI GGNNCC 4 cut(s) 365, 605, 1334, 1396
BspMAI CTGCAG 2 cut(s) 190, 349
BspMI ACCTGC 1 cut(s) 1073
BspT104I TTCGAA 1 cut(s) 425
BspTI CTTAAG 4 cut(s) 229, 776, 905, 1034
BspTNI GGTCTC 1 cut(s) 777
BsrI ACTGG 2 cut(s) 675, 715
BssECI CCNNGG 3 cut(s) 593, 599, 1398
BssMI GATC 4 cut(s) 100, 1143, 1681, 1685
BssNI GRCGYC 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 870, 999
Bst6I CTCTTC 2 cut(s) 1131, 1416
BstACI GRCGYC 1 cut(s) 246
BstAFI CTTAAG 4 cut(s) 229, 776, 905, 1034
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstBI TTCGAA 1 cut(s) 425
BstDEI CTNAG 2 cut(s) 388, 1641
BstEII GGTNACC 1 cut(s) 574
BstF5I GGATG 5 cut(s) 889, 901, 1030, 1456, 1661
BstH2I RGCGCY 1 cut(s) 729
BstHHI GCGC 1 cut(s) 728
BstKTI GATC 4 cut(s) 103, 1146, 1684, 1688
BstMAI GTCTC 3 cut(s) 486, 777, 1221
BstMBI GATC 4 cut(s) 100, 1143, 1681, 1685
BstMWI GCNNNNNNNGC 3 cut(s) 533, 625, 1088
BstNI CCWGG 2 cut(s) 870, 999
BstNSI RCATGY 2 cut(s) 172, 325
BstPI GGTNACC 1 cut(s) 574
BstSCI CCNGG 3 cut(s) 570, 868, 997
BstSFI CTRYAG 3 cut(s) 186, 345, 1191
BstSLI GKGCMC 1 cut(s) 367
BstV1I GCAGC 4 cut(s) 200, 359, 1278, 1279
BstV2I GAAGAC 1 cut(s) 1077
BstXI CCANNNNNNTGG 1 cut(s) 550
Bsu15I ATCGAT 1 cut(s) 1684
BsuRI GGCC 6 cut(s) 365, 407, 562, 598, 648, 881
BsuTUI ATCGAT 1 cut(s) 1684
BtsCI GGATG 5 cut(s) 889, 901, 1030, 1456, 1661
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 3 cut(s) 207, 708, 966
BveI ACCTGC 1 cut(s) 1073
CfoI GCGC 1 cut(s) 728
Cfr13I GGNCC 5 cut(s) 363, 364, 1333, 1395, 1658
ClaI ATCGAT 1 cut(s) 1684
CseI GACGC 2 cut(s) 50, 254
Csp6I GTAC 1 cut(s) 678
CviAII CATG 7 cut(s) 169, 275, 322, 434, 521, 1249, 1565
CviQI GTAC 1 cut(s) 678
DdeI CTNAG 2 cut(s) 388, 1641
DpnI GATC 4 cut(s) 102, 1145, 1683, 1687
DpnII GATC 4 cut(s) 100, 1143, 1681, 1685
Eam1104I CTCTTC 2 cut(s) 1131, 1416
EarI CTCTTC 2 cut(s) 1131, 1416
Eco147I AGGCCT 2 cut(s) 407, 598
Eco24I GRGCYC 3 cut(s) 143, 296, 367
Eco31I GGTCTC 1 cut(s) 777
Eco47I GGWCC 3 cut(s) 1333, 1395, 1658
Eco57I CTGAAG 1 cut(s) 1551
Eco91I GGTNACC 1 cut(s) 574
EcoO109I RGGNCCY 2 cut(s) 363, 364
EcoO65I GGTNACC 1 cut(s) 574
EcoRI GAATTC 2 cut(s) 1560, 1636
EcoRII CCWGG 2 cut(s) 868, 997
EcoT38I GRGCYC 3 cut(s) 143, 296, 367
FaeI CATG 7 cut(s) 172, 278, 325, 437, 524, 1252, 1568
FalI AAGNNNNNCTT 6 cut(s) 212, 244, 371, 403, 673, 705
FaqI GGGAC 3 cut(s) 1042, 1346, 1408
FatI CATG 7 cut(s) 168, 274, 321, 433, 520, 1248, 1564
FauNDI CATATG 1 cut(s) 565
Fnu4HI GCNGC 5 cut(s) 189, 348, 629, 1267, 1293
FokI GGATG 5 cut(s) 876, 908, 1037, 1463, 1648
FriOI GRGCYC 3 cut(s) 143, 296, 367
Fsp4HI GCNGC 5 cut(s) 189, 348, 629, 1267, 1293
FspBI CTAG 2 cut(s) 650, 741
GlaI GCGC 1 cut(s) 727
GluI GCNGC 5 cut(s) 189, 348, 629, 1267, 1293
HaeII RGCGCY 1 cut(s) 729
HaeIII GGCC 6 cut(s) 365, 407, 562, 598, 648, 881
HapII CCGG 3 cut(s) 572, 893, 1022
HgaI GACGC 2 cut(s) 50, 254
HhaI GCGC 1 cut(s) 728
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 7 cut(s) 172, 278, 325, 437, 524, 1252, 1568
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HinfI GANTC 3 cut(s) 37, 686, 1030
HpaII CCGG 3 cut(s) 572, 893, 1022
HphI GGTGA 9 cut(s) 165, 318, 725, 747, 1097, 1528, 1586, 1597, 1634
Hpy188III TCNNGA 6 cut(s) 216, 375, 764, 893, 1022, 1147
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 5 cut(s) 51, 1150, 1238, 1453, 1547
HpyCH4V TGCA 7 cut(s) 86, 188, 347, 1091, 1266, 1429, 1648
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 625, 1088
HpyF3I CTNAG 2 cut(s) 388, 1641
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 7 cut(s) 172, 278, 325, 437, 524, 1252, 1568
HspAI GCGC 1 cut(s) 726
Kpn2I TCCGGA 2 cut(s) 892, 1021
Kzo9I GATC 4 cut(s) 100, 1143, 1681, 1685
LmnI GCTCC 1 cut(s) 1379
Lsp1109I GCAGC 4 cut(s) 200, 359, 1278, 1279
LweI GCATC 6 cut(s) 95, 514, 1078, 1246, 1416, 1578
MaeI CTAG 2 cut(s) 650, 741
MaeIII GTNAC 6 cut(s) 171, 324, 574, 730, 988, 1622
MalI GATC 4 cut(s) 102, 1145, 1683, 1687
MboI GATC 4 cut(s) 100, 1143, 1681, 1685
MfeI CAATTG 1 cut(s) 1284
MhlI GDGCHC 3 cut(s) 143, 296, 367
MlyI GAGTC 1 cut(s) 1024
MmeI TCCRAC 1 cut(s) 1636
MroI TCCGGA 2 cut(s) 892, 1021
MseI TTAA 7 cut(s) 230, 468, 777, 906, 1035, 1166, 1374
MslI CAYNNNNRTG 1 cut(s) 894
MspCI CTTAAG 4 cut(s) 229, 776, 905, 1034
MspI CCGG 3 cut(s) 572, 893, 1022
MspR9I CCNGG 3 cut(s) 572, 870, 999
MunI CAATTG 1 cut(s) 1284
Mva1269I GAATGC 1 cut(s) 1269
MvaI CCWGG 2 cut(s) 870, 999
MwoI GCNNNNNNNGC 3 cut(s) 533, 625, 1088
NciI CCSGG 1 cut(s) 572
NdeI CATATG 1 cut(s) 565
NdeII GATC 4 cut(s) 100, 1143, 1681, 1685
NlaIII CATG 7 cut(s) 172, 278, 325, 437, 524, 1252, 1568
NlaIV GGNNCC 4 cut(s) 365, 605, 1334, 1396
NmuCI GTSAC 4 cut(s) 171, 324, 730, 1622
NspI RCATGY 2 cut(s) 172, 325
NspV TTCGAA 1 cut(s) 425
PaqCI CACCTGC 1 cut(s) 1073
PceI AGGCCT 2 cut(s) 407, 598
PciI ACATGT 2 cut(s) 168, 321
PctI GAATGC 1 cut(s) 1269
PfeI GAWTC 2 cut(s) 37, 686
PkrI GCNGC 5 cut(s) 190, 349, 630, 1268, 1294
PleI GAGTC 1 cut(s) 1024
PpsI GAGTC 1 cut(s) 1024
PscI ACATGT 2 cut(s) 168, 321
Psp6I CCWGG 2 cut(s) 868, 997
PspEI GGTNACC 1 cut(s) 574
PspGI CCWGG 2 cut(s) 868, 997
PspN4I GGNNCC 4 cut(s) 365, 605, 1334, 1396
PspOMI GGGCCC 1 cut(s) 363
PspPI GGNCC 5 cut(s) 363, 364, 1333, 1395, 1658
PstI CTGCAG 2 cut(s) 190, 349
RsaI GTAC 1 cut(s) 679
RsaNI GTAC 1 cut(s) 678
RseI CAYNNNNRTG 1 cut(s) 894
SaqAI TTAA 7 cut(s) 230, 468, 777, 906, 1035, 1166, 1374
SatI GCNGC 5 cut(s) 189, 348, 629, 1267, 1293
Sau3AI GATC 4 cut(s) 100, 1143, 1681, 1685
Sau96I GGNCC 5 cut(s) 363, 364, 1333, 1395, 1658
SchI GAGTC 1 cut(s) 1024
ScrFI CCNGG 3 cut(s) 572, 870, 999
SduI GDGCHC 3 cut(s) 143, 296, 367
SfaNI GCATC 6 cut(s) 95, 514, 1078, 1246, 1416, 1578
SfcI CTRYAG 3 cut(s) 186, 345, 1191
SfuI TTCGAA 1 cut(s) 425
SinI GGWCC 3 cut(s) 1333, 1395, 1658
SmiMI CAYNNNNRTG 1 cut(s) 894
SmlI CTYRAG 5 cut(s) 229, 483, 776, 905, 1034
SmoI CTYRAG 5 cut(s) 229, 483, 776, 905, 1034
SseBI AGGCCT 2 cut(s) 407, 598
SsiI CCGC 2 cut(s) 610, 628
SspI AATATT 1 cut(s) 107
SspMI CTAG 2 cut(s) 650, 741
StuI AGGCCT 2 cut(s) 407, 598
StyD4I CCNGG 3 cut(s) 570, 868, 997
TaqI TCGA 4 cut(s) 47, 308, 425, 1684
TaqII GACCGA 1 cut(s) 1412
TatI WGTACW 1 cut(s) 677
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 2 cut(s) 37, 686
Tru1I TTAA 7 cut(s) 230, 468, 777, 906, 1035, 1166, 1374
Tru9I TTAA 7 cut(s) 230, 468, 777, 906, 1035, 1166, 1374
TscAI CASTG 3 cut(s) 214, 715, 973
TseFI GTSAC 4 cut(s) 171, 324, 730, 1622
TseI GCWGC 4 cut(s) 188, 347, 1266, 1292
Tsp45I GTSAC 4 cut(s) 171, 324, 730, 1622
TspDTI ATGAA 8 cut(s) 33, 804, 933, 1083, 1238, 1452, 1467, 1553
TspGWI ACGGA 1 cut(s) 1654
TspRI CASTG 3 cut(s) 214, 715, 973
Vha464I CTTAAG 4 cut(s) 229, 776, 905, 1034
VpaK11BI GGWCC 3 cut(s) 1333, 1395, 1658
XapI RAATTY 3 cut(s) 1560, 1636, 1691
XceI RCATGY 2 cut(s) 172, 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 707
XspI CTAG 2 cut(s) 650, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.