RchiOBHm_Chr2g0140811

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013732
Physical Location & Seq
Forward (+)
58355536 .. 58357929
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51120

Sequence Viewer

Length: 1617 bp
ATGAAAAGTTTGCTTCTTTTCATGGTTCTAGTACTATTTACCTCACACATGGCTTCTATGAACCAGGAGACCCTCTTTGAGAGTGTTGAGGAGGCGTCTTTGAGGAGTGAGAACCATACATTTGAAACTGATTCATTGAAGAAACTCGAAAGTGGAAGTAATCTCTGGGATCATAGAGAAGAAGGGCAATGGGGTTTAGTAGGAGGAGTCAAAGGAGGTATTGATATAGGGATTGAGGAGGTAAAGGCGGTTGAACCTGTAGAACATGAGCTTGGAAGTGAAGTTCCGGGTCAAGAACAACAGATAAAAATGGATTTTATGGAAGGACACTGGAGAGTTGATGAGGAGGTTAAGGAGGAAGTGAAGGTTGAAGATGAGAATTTGGGAACTGTAGAACATGCTGATATGCCAAGAGAAGTGTTAGCATCACAAGCTGAAGAAAGTGAAGCTTTACAACTGACTGAAGGAGAAGAGAAAAGGGGAGTTGATGACTTGGGTGAAGTGGTAGTGCTAGAAGTTGAAGATATTGAAGAGATTTCTGATCAACTACCTGAGAATTCTGAGTTGTGGGATGTTGTATCTCCAGGAAATGATGAATCTTCTCAACTTTATCAGACACCATCTATGGCTAATGAGGTTGATCTTCGCAGTCTAGTGTCCGATGCTTCAAATGCTTTTGAAGTAGAAGGCAAGGTTGCAGTGGAGCCAATTCATGAAATGATTGAGAGCAAAATGGAGGGAAAAGAGTATTCTAGTAACATGATGGCTGAATTTGTTATATCAGAGACCATGGATGATGATAAAACAGGCCTTGATGGTGAATTTCTCAATTCAGGAGCAGAACAGAAATGGGGGGAGGAGCTACTCAACCACATGAAATCCAAGACATTTTATAGAGCTATTGCTGTTGGGGTCACAATATTTTCAGTAGTTGCAGTCTCTTTGGCTTTGGCGTTTCACTTGAGGCGAAAGAAGGCTATCAGCAAGGATTCTTCGGTGATAGCAAATACTGGTTCCATGAAGAATCTGATAATAGAGCAGAAGAAAATGATTGGGAAGTCTGCAATATCAGAGAAATACAACTCAGCAGTTTCCAACAGAGAAGGGGACAATAGCATTGATCAAGATGTTTACTCATCTTTTAGAAGGATGTCTTTGTCTTCCAATTCAAATAATTCATTTGATGAAGGTTCAGAAGCGTACCATAGCAAGGCACCAAGAATTGAATTGCTGGGTGAGTTTGTGGTTGGAGAGGTCAGCAGCTCTCTAAGAAGTGGTGGTTTGAAAAACAAGATGAGAGAAGGTGAAGAAAGCAATTATGCTGTTTCATCAGAGAAGAAGTCAAGAAGCAAGGCTCATTCAGTTTCAATTCAACAGCAGCCGTCTGTGTCAGAGTTTTCTTACATGGGTTCCCTTTCACATGGAAGCTATACTTCTGAGAAGAAGATAAAGCCAACTGAGTCAGAGTTCTCTTCCATGGATACTTCACATGGAAGCTATACTTCTGAGAAAATTGTCAAGATGAAGGAGGGTGGCAAAAATGGAGAAGTTAAAGTCATTGCAACCCCACTGAGGCGATCAAGCAGAATTCGCAGCAAAACAGTAATGTCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

538

Amino Acids

59.64

Weight (kDa)

4.81

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1213
AciI CCGC 1 cut(s) 248
AclWI GGATC 1 cut(s) 177
AcsI RAATTY 5 cut(s) 379, 556, 770, 821, 1587
AcuI CTGAAG 2 cut(s) 456, 483
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 2 cut(s) 33, 1202
AfiI CCNNNNNNNGG 2 cut(s) 1210, 1572
AjnI CCWGG 2 cut(s) 63, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 8 cut(s) 271, 434, 449, 862, 899, 1263, 1428, 1497
AluI AGCT 8 cut(s) 271, 434, 449, 862, 899, 1263, 1428, 1497
Alw26I GTCTC 3 cut(s) 62, 779, 943
AlwI GGATC 1 cut(s) 177
AoxI GGCC 1 cut(s) 808
ApeKI GCWGC 3 cut(s) 1260, 1378, 1593
ApoI RAATTY 5 cut(s) 379, 556, 770, 821, 1587
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 5 cut(s) 509, 830, 1009, 1247, 1316
BanI GGYRCC 1 cut(s) 1213
BbsI GAAGAC 1 cut(s) 1152
BbvI GCAGC 3 cut(s) 1272, 1390, 1605
BccI CCATC 3 cut(s) 628, 757, 809
BceAI ACGGC 1 cut(s) 1366
BciT130I CCWGG 2 cut(s) 65, 585
BciVI GTATCC 1 cut(s) 1474
BclI TGATCA 2 cut(s) 541, 1120
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 62, 779, 943
BfaI CTAG 4 cut(s) 29, 512, 653, 753
BfmI CTRYAG 2 cut(s) 258, 390
BfuI GTATCC 1 cut(s) 1474
BisI GCNGC 3 cut(s) 1261, 1379, 1594
BlsI GCNGC 3 cut(s) 1262, 1380, 1595
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 3 cut(s) 65, 288, 585
BmiI GGNNCC 4 cut(s) 705, 1015, 1215, 1411
BmrFI CCNGG 3 cut(s) 65, 288, 585
BmsI GCATC 2 cut(s) 434, 652
BpiI GAAGAC 1 cut(s) 1152
BpmI CTGGAG 2 cut(s) 352, 567
BpuEI CTTGAG 1 cut(s) 982
BpuMI CCSGG 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 95
BsaI GGTCTC 2 cut(s) 62, 779
BsaJI CCNNGG 2 cut(s) 789, 1476
Bsc4I CCNNNNNNNGG 2 cut(s) 1210, 1572
Bse1I ACTGG 2 cut(s) 335, 1015
Bse3DI GCAATG 2 cut(s) 194, 1557
BseBI CCWGG 2 cut(s) 65, 585
BseDI CCNNGG 2 cut(s) 789, 1476
BseGI GGATG 3 cut(s) 577, 799, 1155
BseLI CCNNNNNNNGG 2 cut(s) 1210, 1572
BseMI GCAATG 2 cut(s) 194, 1557
BseMII CTCAG 7 cut(s) 543, 552, 1098, 1428, 1449, 1497, 1562
BseNI ACTGG 2 cut(s) 335, 1015
BseRI GAGGAG 6 cut(s) 104, 118, 219, 251, 359, 872
BseXI GCAGC 3 cut(s) 1272, 1390, 1605
BseYI CCCAGC 1 cut(s) 1231
BshFI GGCC 1 cut(s) 810
BshNI GGYRCC 1 cut(s) 1213
BsiSI CCGG 1 cut(s) 287
BslFI GGGAC 2 cut(s) 1121, 1594
BslI CCNNNNNNNGG 2 cut(s) 1210, 1572
BsmAI GTCTC 3 cut(s) 62, 779, 943
BsmFI GGGAC 2 cut(s) 1121, 1594
BsnI GGCC 1 cut(s) 810
Bso31I GGTCTC 2 cut(s) 62, 779
Bsp143I GATC 5 cut(s) 169, 541, 640, 1120, 1577
Bsp19I CCATGG 2 cut(s) 789, 1476
BspACI CCGC 1 cut(s) 248
BspANI GGCC 1 cut(s) 810
BspCNI CTCAG 7 cut(s) 544, 553, 1097, 1429, 1450, 1498, 1563
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 4 cut(s) 705, 1015, 1215, 1411
BspPI GGATC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 1213
BspTNI GGTCTC 2 cut(s) 62, 779
BsrDI GCAATG 2 cut(s) 194, 1557
BsrI ACTGG 2 cut(s) 335, 1015
BssECI CCNNGG 2 cut(s) 789, 1476
BssMI GATC 5 cut(s) 169, 541, 640, 1120, 1577
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 2 cut(s) 789, 1476
Bst2UI CCWGG 2 cut(s) 65, 585
Bst4CI ACNGT 2 cut(s) 391, 1603
Bst6I CTCTTC 3 cut(s) 465, 525, 1477
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 8 cut(s) 552, 561, 1084, 1268, 1437, 1458, 1506, 1571
BstDSI CCRYGG 2 cut(s) 789, 1476
BstF5I GGATG 3 cut(s) 577, 799, 1155
BstKTI GATC 5 cut(s) 172, 544, 643, 1123, 1580
BstMAI GTCTC 3 cut(s) 62, 779, 943
BstMBI GATC 5 cut(s) 169, 541, 640, 1120, 1577
BstMWI GCNNNNNNNGC 3 cut(s) 431, 671, 1590
BstNI CCWGG 2 cut(s) 65, 585
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 3 cut(s) 63, 286, 583
BstSFI CTRYAG 2 cut(s) 258, 390
BstV1I GCAGC 3 cut(s) 1272, 1390, 1605
BstV2I GAAGAC 1 cut(s) 1152
BsuI GTATCC 1 cut(s) 1474
BsuRI GGCC 1 cut(s) 810
BtgI CCRYGG 2 cut(s) 789, 1476
BtsCI GGATG 3 cut(s) 577, 799, 1155
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 3 cut(s) 328, 705, 1568
CciI TCATGA 1 cut(s) 712
CseI GACGC 1 cut(s) 84
Csp6I GTAC 2 cut(s) 32, 1201
CviQI GTAC 2 cut(s) 32, 1201
DdeI CTNAG 8 cut(s) 552, 561, 1084, 1268, 1437, 1458, 1506, 1571
DpnI GATC 5 cut(s) 171, 543, 642, 1122, 1579
DpnII GATC 5 cut(s) 169, 541, 640, 1120, 1577
Eam1104I CTCTTC 3 cut(s) 465, 525, 1477
EarI CTCTTC 3 cut(s) 465, 525, 1477
Eco130I CCWWGG 2 cut(s) 789, 1476
Eco147I AGGCCT 1 cut(s) 810
Eco31I GGTCTC 2 cut(s) 62, 779
Eco57I CTGAAG 2 cut(s) 456, 483
EcoRI GAATTC 2 cut(s) 556, 1587
EcoRII CCWGG 2 cut(s) 63, 583
EcoT14I CCWWGG 2 cut(s) 789, 1476
ErhI CCWWGG 2 cut(s) 789, 1476
FalI AAGNNNNNCTT 8 cut(s) 433, 465, 1138, 1170, 1417, 1449, 1486, 1518
FaqI GGGAC 2 cut(s) 1121, 1594
FbaI TGATCA 2 cut(s) 541, 1120
Fnu4HI GCNGC 3 cut(s) 1261, 1379, 1594
FokI GGATG 3 cut(s) 584, 806, 1162
Fsp4HI GCNGC 3 cut(s) 1261, 1379, 1594
FspBI CTAG 4 cut(s) 29, 512, 653, 753
GluI GCNGC 3 cut(s) 1261, 1379, 1594
GsaI CCCAGC 1 cut(s) 1235
GsuI CTGGAG 2 cut(s) 352, 567
HaeIII GGCC 1 cut(s) 810
HapII CCGG 1 cut(s) 287
HgaI GACGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 95
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 6 cut(s) 131, 207, 596, 989, 1024, 1460
HpaII CCGG 1 cut(s) 287
HphI GGTGA 5 cut(s) 509, 830, 1009, 1247, 1316
Hpy166II GTNNAC 1 cut(s) 1132
Hpy188III TCNNGA 6 cut(s) 293, 713, 834, 1124, 1344, 1519
Hpy8I GTNNAC 1 cut(s) 1132
HpyCH4III ACNGT 2 cut(s) 391, 1603
HpyCH4V TGCA 4 cut(s) 698, 935, 1064, 1562
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 671, 1590
HpyF3I CTNAG 8 cut(s) 552, 561, 1084, 1268, 1437, 1458, 1506, 1571
Hsp92I GRCGYC 1 cut(s) 95
Ksp22I TGATCA 2 cut(s) 541, 1120
Kzo9I GATC 5 cut(s) 169, 541, 640, 1120, 1577
LmnI GCTCC 3 cut(s) 703, 836, 859
Lsp1109I GCAGC 3 cut(s) 1272, 1390, 1605
LweI GCATC 2 cut(s) 434, 652
MaeI CTAG 4 cut(s) 29, 512, 653, 753
MaeIII GTNAC 2 cut(s) 755, 913
MalI GATC 5 cut(s) 171, 543, 642, 1122, 1579
MboI GATC 5 cut(s) 169, 541, 640, 1120, 1577
MlyI GAGTC 2 cut(s) 216, 1469
MmeI TCCRAC 2 cut(s) 1119, 1228
MseI TTAA 2 cut(s) 351, 1551
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 3 cut(s) 65, 288, 585
MvaI CCWGG 2 cut(s) 65, 585
MwoI GCNNNNNNNGC 3 cut(s) 431, 671, 1590
NciI CCSGG 1 cut(s) 288
NcoI CCATGG 2 cut(s) 789, 1476
NdeII GATC 5 cut(s) 169, 541, 640, 1120, 1577
NlaIV GGNNCC 4 cut(s) 705, 1015, 1215, 1411
NmuCI GTSAC 1 cut(s) 913
NspI RCATGY 1 cut(s) 401
PagI TCATGA 1 cut(s) 712
PceI AGGCCT 1 cut(s) 810
PfeI GAWTC 4 cut(s) 131, 596, 989, 1024
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 3 cut(s) 1262, 1380, 1595
PleI GAGTC 2 cut(s) 215, 1468
PpsI GAGTC 2 cut(s) 215, 1468
Psp6I CCWGG 2 cut(s) 63, 583
PspFI CCCAGC 1 cut(s) 1231
PspGI CCWGG 2 cut(s) 63, 583
PspN4I GGNNCC 4 cut(s) 705, 1015, 1215, 1411
RsaI GTAC 2 cut(s) 33, 1202
RsaNI GTAC 2 cut(s) 32, 1201
SaqAI TTAA 2 cut(s) 351, 1551
SatI GCNGC 3 cut(s) 1261, 1379, 1594
Sau3AI GATC 5 cut(s) 169, 541, 640, 1120, 1577
ScaI AGTACT 1 cut(s) 33
SchI GAGTC 2 cut(s) 216, 1469
ScrFI CCNGG 3 cut(s) 65, 288, 585
SfaNI GCATC 2 cut(s) 434, 652
SfcI CTRYAG 2 cut(s) 258, 390
SmlI CTYRAG 1 cut(s) 961
SmoI CTYRAG 1 cut(s) 961
SseBI AGGCCT 1 cut(s) 810
SsiI CCGC 1 cut(s) 248
SspI AATATT 1 cut(s) 921
SspMI CTAG 4 cut(s) 29, 512, 653, 753
StuI AGGCCT 1 cut(s) 810
StyD4I CCNGG 3 cut(s) 63, 286, 583
StyI CCWWGG 2 cut(s) 789, 1476
TaaI ACNGT 2 cut(s) 391, 1603
TaqI TCGA 1 cut(s) 147
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 4 cut(s) 131, 596, 989, 1024
Tru1I TTAA 2 cut(s) 351, 1551
Tru9I TTAA 2 cut(s) 351, 1551
TscAI CASTG 3 cut(s) 335, 705, 1575
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 3 cut(s) 1260, 1378, 1593
Tsp45I GTSAC 1 cut(s) 913
TspRI CASTG 3 cut(s) 335, 705, 1575
XapI RAATTY 5 cut(s) 379, 556, 770, 821, 1587
XceI RCATGY 1 cut(s) 401
XspI CTAG 4 cut(s) 29, 512, 653, 753
ZrmI AGTACT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.