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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD09G1201700.v1.1 MD09G1201800.v1.1 MD17G1181700.v1.1 |
| prunus_persica | Prupe.3G057400_v2.0.a1 |
| pyrus_communis | pycom09g11850 pycom09g11860 pycom17g19140 |
| rosa_chinensis | RchiOBHm_Chr2g0140801 RchiOBHm_Chr2g0140811 |
| rosa_laevigata | RLG00000019898 |
| rosa_multiflora | Rmu_sc0003342.1_g000039 |
| rosa_roxburghii | Rroxscaffold_2G00104490 |
| rosa_rugosa | Rorug02G0365300 |
| rosa_samantha | Rh2AG416600 Rh2BG426200 Rh2CG402800 Rh2DG436100 |
| rosa_wichuraiana | Rw2G034080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 408, 1960 |
| AciI | CCGC | 1 cut(s) | 171 |
| AclWI | GGATC | 1 cut(s) | 927 |
| AcsI | RAATTY | 5 cut(s) | 1129, 1303, 1517, 1568, 2259 |
| AcuI | CTGAAG | 1 cut(s) | 1230 |
| AcyI | GRCGYC | 1 cut(s) | 409 |
| AdeI | CACNNNGTG | 1 cut(s) | 302 |
| AfaI | GTAC | 2 cut(s) | 783, 1949 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1957, 2244 |
| AflIII | ACRYGT | 1 cut(s) | 153 |
| AjnI | CCWGG | 2 cut(s) | 813, 1330 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1005, 1037 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1017, 1049 |
| AluBI | AGCT | 7 cut(s) | 176, 1021, 1184, 1196, 1609, 1646, 2175 |
| AluI | AGCT | 7 cut(s) | 176, 1021, 1184, 1196, 1609, 1646, 2175 |
| Alw21I | GWGCWC | 1 cut(s) | 90 |
| Alw26I | GTCTC | 4 cut(s) | 812, 1526, 1666, 1690 |
| AlwI | GGATC | 1 cut(s) | 927 |
| AoxI | GGCC | 7 cut(s) | 44, 62, 264, 341, 377, 427, 1555 |
| ApeKI | GCWGC | 3 cut(s) | 173, 2125, 2265 |
| ApoI | RAATTY | 5 cut(s) | 1129, 1303, 1517, 1568, 2259 |
| AspA2I | CCTAGG | 1 cut(s) | 430 |
| AspLEI | GCGC | 1 cut(s) | 411 |
| AspS9I | GGNCC | 2 cut(s) | 45, 63 |
| AsuHPI | GGTGA | 8 cut(s) | 224, 611, 1040, 1256, 1577, 1756, 1994, 2063 |
| AvrII | CCTAGG | 1 cut(s) | 430 |
| BanI | GGYRCC | 2 cut(s) | 408, 1960 |
| BbsI | GAAGAC | 3 cut(s) | 21, 327, 1899 |
| Bbv12I | GWGCWC | 1 cut(s) | 90 |
| BbvI | GCAGC | 3 cut(s) | 185, 2137, 2277 |
| BccI | CCATC | 7 cut(s) | 452, 575, 668, 698, 1375, 1504, 1556 |
| BceAI | ACGGC | 2 cut(s) | 396, 2113 |
| BciT130I | CCWGG | 2 cut(s) | 815, 1332 |
| BclI | TGATCA | 1 cut(s) | 1867 |
| BcoDI | GTCTC | 4 cut(s) | 812, 1526, 1666, 1690 |
| BfaI | CTAG | 9 cut(s) | 42, 195, 431, 504, 537, 779, 1259, 1400, 1500 |
| BfmI | CTRYAG | 2 cut(s) | 1008, 1140 |
| BfoI | RGCGCY | 1 cut(s) | 412 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 43 |
| BisI | GCNGC | 3 cut(s) | 174, 2126, 2266 |
| BlnI | CCTAGG | 1 cut(s) | 430 |
| BlsI | GCNGC | 3 cut(s) | 175, 2127, 2267 |
| BmcAI | AGTACT | 1 cut(s) | 783 |
| Bme1390I | CCNGG | 2 cut(s) | 815, 1332 |
| BmgT120I | GGNCC | 2 cut(s) | 45, 63 |
| BmiI | GGNNCC | 8 cut(s) | 10, 47, 65, 410, 1452, 1762, 1962, 2158 |
| BmrFI | CCNGG | 2 cut(s) | 815, 1332 |
| BmrI | ACTGGG | 1 cut(s) | 347 |
| BmsI | GCATC | 3 cut(s) | 592, 1184, 1399 |
| BmuI | ACTGGG | 1 cut(s) | 347 |
| BpiI | GAAGAC | 3 cut(s) | 21, 327, 1899 |
| BpmI | CTGGAG | 3 cut(s) | 267, 1102, 1314 |
| BpuEI | CTTGAG | 1 cut(s) | 1729 |
| Bsa29I | ATCGAT | 1 cut(s) | 137 |
| BsaHI | GRCGYC | 1 cut(s) | 409 |
| BsaI | GGTCTC | 3 cut(s) | 812, 1526, 1666 |
| BsaJI | CCNNGG | 4 cut(s) | 59, 374, 430, 1536 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1017, 1047 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1957, 2244 |
| Bse1I | ACTGG | 4 cut(s) | 284, 353, 1085, 1762 |
| Bse3DI | GCAATG | 4 cut(s) | 448, 798, 944, 2229 |
| BseBI | CCWGG | 2 cut(s) | 815, 1332 |
| BseCI | ATCGAT | 1 cut(s) | 137 |
| BseDI | CCNNGG | 4 cut(s) | 59, 374, 430, 1536 |
| BseGI | GGATG | 6 cut(s) | 10, 658, 1324, 1546, 1879, 1902 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1957, 2244 |
| BseMI | GCAATG | 4 cut(s) | 448, 798, 944, 2229 |
| BseMII | CTCAG | 5 cut(s) | 1290, 1299, 1845, 2175, 2234 |
| BseNI | ACTGG | 4 cut(s) | 284, 353, 1085, 1762 |
| BseRI | GAGGAG | 8 cut(s) | 587, 854, 868, 969, 1001, 1109, 1619, 1726 |
| BseXI | GCAGC | 3 cut(s) | 185, 2137, 2277 |
| BseYI | CCCAGC | 1 cut(s) | 1978 |
| BshFI | GGCC | 7 cut(s) | 46, 64, 266, 343, 379, 429, 1557 |
| BshNI | GGYRCC | 2 cut(s) | 408, 1960 |
| BshVI | ATCGAT | 1 cut(s) | 137 |
| BsiHKAI | GWGCWC | 1 cut(s) | 90 |
| BslFI | GGGAC | 3 cut(s) | 142, 1868, 2266 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1957, 2244 |
| BsmAI | GTCTC | 4 cut(s) | 812, 1526, 1666, 1690 |
| BsmFI | GGGAC | 3 cut(s) | 142, 1868, 2266 |
| BsnI | GGCC | 7 cut(s) | 46, 64, 266, 343, 379, 429, 1557 |
| Bso31I | GGTCTC | 3 cut(s) | 812, 1526, 1666 |
| Bsp1286I | GDGCHC | 1 cut(s) | 90 |
| Bsp143I | GATC | 5 cut(s) | 919, 1288, 1387, 1867, 2249 |
| Bsp19I | CCATGG | 1 cut(s) | 1536 |
| BspACI | CCGC | 1 cut(s) | 171 |
| BspANI | GGCC | 7 cut(s) | 46, 64, 266, 343, 379, 429, 1557 |
| BspCNI | CTCAG | 5 cut(s) | 1291, 1300, 1844, 2176, 2235 |
| BspDI | ATCGAT | 1 cut(s) | 137 |
| BspHI | TCATGA | 1 cut(s) | 1459 |
| BspLI | GGNNCC | 8 cut(s) | 10, 47, 65, 410, 1452, 1762, 1962, 2158 |
| BspPI | GGATC | 1 cut(s) | 927 |
| BspT107I | GGYRCC | 2 cut(s) | 408, 1960 |
| BspTNI | GGTCTC | 3 cut(s) | 812, 1526, 1666 |
| BsrDI | GCAATG | 4 cut(s) | 448, 798, 944, 2229 |
| BsrI | ACTGG | 4 cut(s) | 284, 353, 1085, 1762 |
| BssECI | CCNNGG | 4 cut(s) | 59, 374, 430, 1536 |
| BssMI | GATC | 5 cut(s) | 919, 1288, 1387, 1867, 2249 |
| BssNI | GRCGYC | 1 cut(s) | 409 |
| BssT1I | CCWWGG | 3 cut(s) | 59, 430, 1536 |
| Bst2UI | CCWGG | 2 cut(s) | 815, 1332 |
| Bst4CI | ACNGT | 2 cut(s) | 1141, 2275 |
| Bst6I | CTCTTC | 3 cut(s) | 714, 1212, 1272 |
| BstACI | GRCGYC | 1 cut(s) | 409 |
| BstDEI | CTNAG | 8 cut(s) | 208, 470, 1299, 1308, 1831, 2015, 2184, 2243 |
| BstDSI | CCRYGG | 1 cut(s) | 1536 |
| BstF5I | GGATG | 6 cut(s) | 10, 658, 1324, 1546, 1879, 1902 |
| BstH2I | RGCGCY | 1 cut(s) | 412 |
| BstHHI | GCGC | 1 cut(s) | 411 |
| BstKTI | GATC | 5 cut(s) | 922, 1291, 1390, 1870, 2252 |
| BstMAI | GTCTC | 4 cut(s) | 812, 1526, 1666, 1690 |
| BstMBI | GATC | 5 cut(s) | 919, 1288, 1387, 1867, 2249 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 43, 182, 1181, 1418, 2262 |
| BstNI | CCWGG | 2 cut(s) | 815, 1332 |
| BstNSI | RCATGY | 2 cut(s) | 157, 1151 |
| BstSCI | CCNGG | 2 cut(s) | 813, 1330 |
| BstSFI | CTRYAG | 2 cut(s) | 1008, 1140 |
| BstV1I | GCAGC | 3 cut(s) | 185, 2137, 2277 |
| BstV2I | GAAGAC | 3 cut(s) | 21, 327, 1899 |
| Bsu15I | ATCGAT | 1 cut(s) | 137 |
| BsuRI | GGCC | 7 cut(s) | 46, 64, 266, 343, 379, 429, 1557 |
| BsuTUI | ATCGAT | 1 cut(s) | 137 |
| BtgI | CCRYGG | 1 cut(s) | 1536 |
| BtsCI | GGATG | 6 cut(s) | 10, 658, 1324, 1546, 1879, 1902 |
| BtsI | GCAGTG | 2 cut(s) | 484, 1452 |
| BtsIMutI | CAGTG | 4 cut(s) | 484, 1078, 1452, 2240 |
| CciI | TCATGA | 1 cut(s) | 1459 |
| CfoI | GCGC | 1 cut(s) | 411 |
| Cfr13I | GGNCC | 2 cut(s) | 45, 63 |
| ClaI | ATCGAT | 1 cut(s) | 137 |
| Csp6I | GTAC | 2 cut(s) | 782, 1948 |
| CviQI | GTAC | 2 cut(s) | 782, 1948 |
| DdeI | CTNAG | 8 cut(s) | 208, 470, 1299, 1308, 1831, 2015, 2184, 2243 |
| DinI | GGCGCC | 1 cut(s) | 410 |
| DpnI | GATC | 5 cut(s) | 921, 1290, 1389, 1869, 2251 |
| DpnII | GATC | 5 cut(s) | 919, 1288, 1387, 1867, 2249 |
| DraIII | CACNNNGTG | 1 cut(s) | 302 |
| Eam1104I | CTCTTC | 3 cut(s) | 714, 1212, 1272 |
| EarI | CTCTTC | 3 cut(s) | 714, 1212, 1272 |
| Eco130I | CCWWGG | 3 cut(s) | 59, 430, 1536 |
| Eco147I | AGGCCT | 3 cut(s) | 343, 379, 1557 |
| Eco31I | GGTCTC | 3 cut(s) | 812, 1526, 1666 |
| Eco57I | CTGAAG | 1 cut(s) | 1230 |
| EcoO109I | RGGNCCY | 2 cut(s) | 45, 63 |
| EcoRI | GAATTC | 2 cut(s) | 1303, 2259 |
| EcoRII | CCWGG | 2 cut(s) | 813, 1330 |
| EcoT14I | CCWWGG | 3 cut(s) | 59, 430, 1536 |
| EgeI | GGCGCC | 1 cut(s) | 410 |
| EheI | GGCGCC | 1 cut(s) | 410 |
| ErhI | CCWWGG | 3 cut(s) | 59, 430, 1536 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 191, 223, 1180, 1212, 2164, 2196 |
| FaqI | GGGAC | 3 cut(s) | 142, 1868, 2266 |
| FbaI | TGATCA | 1 cut(s) | 1867 |
| Fnu4HI | GCNGC | 3 cut(s) | 174, 2126, 2266 |
| FokI | GGATG | 6 cut(s) | 17, 665, 1331, 1553, 1886, 1909 |
| Fsp4HI | GCNGC | 3 cut(s) | 174, 2126, 2266 |
| FspBI | CTAG | 9 cut(s) | 42, 195, 431, 504, 537, 779, 1259, 1400, 1500 |
| GlaI | GCGC | 1 cut(s) | 410 |
| GluI | GCNGC | 3 cut(s) | 174, 2126, 2266 |
| GsaI | CCCAGC | 1 cut(s) | 1982 |
| GsuI | CTGGAG | 3 cut(s) | 267, 1102, 1314 |
| HaeII | RGCGCY | 1 cut(s) | 412 |
| HaeIII | GGCC | 7 cut(s) | 46, 64, 266, 343, 379, 429, 1557 |
| HhaI | GCGC | 1 cut(s) | 411 |
| Hin1I | GRCGYC | 1 cut(s) | 409 |
| Hin6I | GCGC | 1 cut(s) | 409 |
| HinP1I | GCGC | 1 cut(s) | 409 |
| HindIII | AAGCTT | 1 cut(s) | 1194 |
| HphI | GGTGA | 8 cut(s) | 224, 611, 1040, 1256, 1577, 1756, 1994, 2063 |
| Hpy166II | GTNNAC | 1 cut(s) | 1879 |
| Hpy188III | TCNNGA | 6 cut(s) | 195, 1043, 1460, 1581, 1871, 2091 |
| Hpy8I | GTNNAC | 1 cut(s) | 1879 |
| HpyCH4III | ACNGT | 2 cut(s) | 1141, 2275 |
| HpyCH4V | TGCA | 7 cut(s) | 53, 446, 605, 1445, 1682, 1811, 2234 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 43, 182, 1181, 1418, 2262 |
| HpyF3I | CTNAG | 8 cut(s) | 208, 470, 1299, 1308, 1831, 2015, 2184, 2243 |
| Hsp92I | GRCGYC | 1 cut(s) | 409 |
| HspAI | GCGC | 1 cut(s) | 409 |
| KasI | GGCGCC | 1 cut(s) | 408 |
| Ksp22I | TGATCA | 1 cut(s) | 1867 |
| Kzo9I | GATC | 5 cut(s) | 919, 1288, 1387, 1867, 2249 |
| LmnI | GCTCC | 3 cut(s) | 1450, 1583, 1606 |
| Lsp1109I | GCAGC | 3 cut(s) | 185, 2137, 2277 |
| LweI | GCATC | 3 cut(s) | 592, 1184, 1399 |
| MaeI | CTAG | 9 cut(s) | 42, 195, 431, 504, 537, 779, 1259, 1400, 1500 |
| MaeIII | GTNAC | 3 cut(s) | 355, 526, 1502 |
| MalI | GATC | 5 cut(s) | 921, 1290, 1389, 1869, 2251 |
| MboI | GATC | 5 cut(s) | 919, 1288, 1387, 1867, 2249 |
| MfeI | CAATTG | 1 cut(s) | 101 |
| MhlI | GDGCHC | 1 cut(s) | 90 |
| Mly113I | GGCGCC | 1 cut(s) | 409 |
| MlyI | GAGTC | 2 cut(s) | 475, 966 |
| MmeI | TCCRAC | 3 cut(s) | 270, 1866, 1975 |
| MseI | TTAA | 5 cut(s) | 275, 591, 612, 1101, 1356 |
| MspR9I | CCNGG | 2 cut(s) | 815, 1332 |
| MunI | CAATTG | 1 cut(s) | 101 |
| MvaI | CCWGG | 2 cut(s) | 815, 1332 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 43, 182, 1181, 1418, 2262 |
| NarI | GGCGCC | 1 cut(s) | 409 |
| NcoI | CCATGG | 1 cut(s) | 1536 |
| NdeII | GATC | 5 cut(s) | 919, 1288, 1387, 1867, 2249 |
| NlaIV | GGNNCC | 8 cut(s) | 10, 47, 65, 410, 1452, 1762, 1962, 2158 |
| NspI | RCATGY | 2 cut(s) | 157, 1151 |
| PagI | TCATGA | 1 cut(s) | 1459 |
| PceI | AGGCCT | 3 cut(s) | 343, 379, 1557 |
| PciI | ACATGT | 1 cut(s) | 153 |
| PfeI | GAWTC | 8 cut(s) | 233, 421, 491, 623, 881, 1343, 1736, 1771 |
| PfoI | TCCNGGA | 1 cut(s) | 1330 |
| PkrI | GCNGC | 3 cut(s) | 175, 2127, 2267 |
| PleI | GAGTC | 2 cut(s) | 474, 965 |
| PluTI | GGCGCC | 1 cut(s) | 412 |
| PpsI | GAGTC | 2 cut(s) | 474, 965 |
| PscI | ACATGT | 1 cut(s) | 153 |
| Psp6I | CCWGG | 2 cut(s) | 813, 1330 |
| PspFI | CCCAGC | 1 cut(s) | 1978 |
| PspGI | CCWGG | 2 cut(s) | 813, 1330 |
| PspN4I | GGNNCC | 8 cut(s) | 10, 47, 65, 410, 1452, 1762, 1962, 2158 |
| PspPI | GGNCC | 2 cut(s) | 45, 63 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 466, 498 |
| RsaI | GTAC | 2 cut(s) | 783, 1949 |
| RsaNI | GTAC | 2 cut(s) | 782, 1948 |
| SaqAI | TTAA | 5 cut(s) | 275, 591, 612, 1101, 1356 |
| SatI | GCNGC | 3 cut(s) | 174, 2126, 2266 |
| Sau3AI | GATC | 5 cut(s) | 919, 1288, 1387, 1867, 2249 |
| Sau96I | GGNCC | 2 cut(s) | 45, 63 |
| ScaI | AGTACT | 1 cut(s) | 783 |
| SchI | GAGTC | 2 cut(s) | 475, 966 |
| ScrFI | CCNGG | 2 cut(s) | 815, 1332 |
| SduI | GDGCHC | 1 cut(s) | 90 |
| SfaNI | GCATC | 3 cut(s) | 592, 1184, 1399 |
| SfcI | CTRYAG | 2 cut(s) | 1008, 1140 |
| SfoI | GGCGCC | 1 cut(s) | 410 |
| SmlI | CTYRAG | 1 cut(s) | 1708 |
| SmoI | CTYRAG | 1 cut(s) | 1708 |
| SseBI | AGGCCT | 3 cut(s) | 343, 379, 1557 |
| SsiI | CCGC | 1 cut(s) | 171 |
| SspDI | GGCGCC | 1 cut(s) | 408 |
| SspI | AATATT | 1 cut(s) | 1668 |
| SspMI | CTAG | 9 cut(s) | 42, 195, 431, 504, 537, 779, 1259, 1400, 1500 |
| StuI | AGGCCT | 3 cut(s) | 343, 379, 1557 |
| StyD4I | CCNGG | 2 cut(s) | 813, 1330 |
| StyI | CCWWGG | 3 cut(s) | 59, 430, 1536 |
| TaaI | ACNGT | 2 cut(s) | 1141, 2275 |
| TaqI | TCGA | 2 cut(s) | 137, 897 |
| TatI | WGTACW | 1 cut(s) | 781 |
| TfiI | GAWTC | 8 cut(s) | 233, 421, 491, 623, 881, 1343, 1736, 1771 |
| Tru1I | TTAA | 5 cut(s) | 275, 591, 612, 1101, 1356 |
| Tru9I | TTAA | 5 cut(s) | 275, 591, 612, 1101, 1356 |
| TscAI | CASTG | 4 cut(s) | 484, 1085, 1452, 2247 |
| TseI | GCWGC | 3 cut(s) | 173, 2125, 2265 |
| TspRI | CASTG | 4 cut(s) | 484, 1085, 1452, 2247 |
| XapI | RAATTY | 5 cut(s) | 1129, 1303, 1517, 1568, 2259 |
| XbaI | TCTAGA | 1 cut(s) | 194 |
| XceI | RCATGY | 2 cut(s) | 157, 1151 |
| XmaJI | CCTAGG | 1 cut(s) | 430 |
| XspI | CTAG | 9 cut(s) | 42, 195, 431, 504, 537, 779, 1259, 1400, 1500 |
| ZrmI | AGTACT | 1 cut(s) | 783 |