Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013732

Physical Location & Seq

Genomic Coordinates Forward (+)

58354357 .. 58355534

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51119

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAATTATCCACGTTTGGTGCCGTTGCAAGCCCCTCATTCCAACGGTCTCAAATTTTCAAAATCCCATATAGAACAAATCCTCCATTCTCCAACGGTCGTCTCCACGCTCTTTGCTTCCCCACTTCACAACCACCCACAGTGCTTTCCCTCTCAATTTTGCAACACATTCAAATTCAGCGAATCATTCTCAAAGGAAATGGAAGGTTCTGTCATGGCTCTTTCGTCTTCAACGCCCACTAGGCCCCCTGCAACTCCAAAACCATCTGCATCAGATGAAAACGAGCACTACTATCAGCAATTGGGAAGCCCCAATTTGTCTAACCCCAAGAAATCGATGAAAAAGCACTACATGTCGCCAACTATATCCGCGGCTTGTAAGGCAGTTTCTTCTAGAAAGAACATCTTAGGTGAAAGAAATGAGGTTTCTGAATCAGTTTTTTCCAACACCCATGTTGAAAAGGCCACACCCTTAACGCCTCCAGTTTCTAAATCACTTTGTGATGAACAAAATGTTGTTTCAGATGATTTGTCTTCAAGGCCTTATGACCCAGTTACCAATTACCTTTCTCCGAGGCCTCAATTCCTCCGATATAACCCGAATAGGCGCCGTGAGTTGATTCTTGGCCTAGGAAATAGCAATGCAGAAGGAATTGATGGGTTGAATCTTAGTAGCAGTGGTTCTTTTGAATCCCAGAAGGCTAGTGATGAGGAAGGTGGTTCTGTTACCACTTCTAGTTCTTCTGATAAGCAGGAAGATGAAGATGTTGAGGAGATTGATGGAGAAATTAAGGGGGGTGATGCAGAAATTAAGGGCATTGAATCCATTGATGAAGTGATTGAGGGAGGGATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

31.14

Weight (kDa)

5.34

Isoelectric Point (pI)

70.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013732)

Species	Orthologous Gene IDs
malus_domestica	MD09G1201700.v1.1 MD09G1201800.v1.1 MD17G1181700.v1.1
prunus_persica	Prupe.3G057400_v2.0.a1
pyrus_communis	pycom09g11850 pycom09g11860 pycom17g19140
rosa_chinensis	RchiOBHm_Chr2g0140801 RchiOBHm_Chr2g0140811
rosa_laevigata	RLG00000019898
rosa_multiflora	Rmu_sc0003342.1_g000039
rosa_roxburghii	Rroxscaffold_2G00104490
rosa_rugosa	Rorug02G0365300
rosa_samantha	Rh2AG416600 Rh2BG426200 Rh2CG402800 Rh2DG436100
rosa_wichuraiana	Rw2G034080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 606
AccII	CGCG	1 cut(s)	371
AciI	CCGC	2 cut(s)	369, 371
AcsI	RAATTY	2 cut(s)	53, 173
AcyI	GRCGYC	1 cut(s)	607
AdeI	CACNNNGTG	1 cut(s)	500
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	8 cut(s)	60, 172, 231, 458, 537, 664, 689, 821
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	53, 106
AoxI	GGCC	5 cut(s)	242, 462, 539, 575, 625
ApoI	RAATTY	2 cut(s)	53, 173
AspA2I	CCTAGG	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	422, 809
AvrII	CCTAGG	1 cut(s)	628
BanI	GGYRCC	2 cut(s)	19, 606
BbsI	GAAGAC	2 cut(s)	219, 525
Bbv12I	GWGCWC	1 cut(s)	288
BccI	CCATC	3 cut(s)	271, 650, 773
BceAI	ACGGC	2 cut(s)	7, 594
BcoDI	GTCTC	2 cut(s)	53, 106
BfaI	CTAG	5 cut(s)	240, 393, 629, 702, 735
BfoI	RGCGCY	1 cut(s)	610
BglI	GCCNNNNNGGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	372
BlnI	CCTAGG	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	3 cut(s)	21, 245, 608
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	2 cut(s)	278, 790
BmuI	ACTGGG	1 cut(s)	545
BpiI	GAAGAC	2 cut(s)	219, 525
BpmI	CTGGAG	1 cut(s)	465
Bsa29I	ATCGAT	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	607
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	369, 572, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse1I	ACTGG	2 cut(s)	482, 551
Bse3DI	GCAATG	1 cut(s)	646
BseCI	ATCGAT	1 cut(s)	335
BseDI	CCNNGG	3 cut(s)	369, 572, 628
BseGI	GGATG	1 cut(s)	855
BseMI	GCAATG	1 cut(s)	646
BseNI	ACTGG	2 cut(s)	482, 551
BseRI	GAGGAG	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	5 cut(s)	244, 464, 541, 577, 627
BshNI	GGYRCC	2 cut(s)	19, 606
BshVI	ATCGAT	1 cut(s)	335
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	53, 106
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	5 cut(s)	244, 464, 541, 577, 627
Bso31I	GGTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	288
BspACI	CCGC	2 cut(s)	369, 371
BspANI	GGCC	5 cut(s)	244, 464, 541, 577, 627
BspDI	ATCGAT	1 cut(s)	335
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	3 cut(s)	21, 245, 608
BspT107I	GGYRCC	2 cut(s)	19, 606
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	646
BsrI	ACTGG	2 cut(s)	482, 551
BssECI	CCNNGG	3 cut(s)	369, 572, 628
BssNI	GRCGYC	1 cut(s)	607
BssT1I	CCWWGG	1 cut(s)	628
Bst4CI	ACNGT	3 cut(s)	47, 97, 141
BstACI	GRCGYC	1 cut(s)	607
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	406, 668
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	855
BstFNI	CGCG	1 cut(s)	371
BstH2I	RGCGCY	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	609
BstMAI	GTCTC	2 cut(s)	53, 106
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 380
BstNSI	RCATGY	1 cut(s)	355
BstUI	CGCG	1 cut(s)	371
BstV2I	GAAGAC	2 cut(s)	219, 525
Bsu15I	ATCGAT	1 cut(s)	335
BsuRI	GGCC	5 cut(s)	244, 464, 541, 577, 627
BsuTUI	ATCGAT	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	855
BtsI	GCAGTG	1 cut(s)	682
BtsIMutI	CAGTG	2 cut(s)	146, 682
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	609
Cfr13I	GGNCC	1 cut(s)	243
Cfr42I	CCGCGG	1 cut(s)	372
ClaI	ATCGAT	1 cut(s)	335
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	3 cut(s)	214, 352, 452
DdeI	CTNAG	2 cut(s)	406, 668
DinI	GGCGCC	1 cut(s)	608
DraIII	CACNNNGTG	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	628
Eco147I	AGGCCT	2 cut(s)	541, 577
Eco31I	GGTCTC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	628
EgeI	GGCGCC	1 cut(s)	608
EheI	GGCGCC	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	628
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	3 cut(s)	217, 355, 455
FaiI	YATR	8 cut(s)	69, 71, 215, 353, 365, 453, 546, 594
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	3 cut(s)	213, 351, 451
Fnu4HI	GCNGC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	5 cut(s)	240, 393, 629, 702, 735
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	610
HaeIII	GGCC	5 cut(s)	244, 464, 541, 577, 627
HhaI	GCGC	1 cut(s)	609
Hin1I	GRCGYC	1 cut(s)	607
Hin1II	CATG	3 cut(s)	217, 355, 455
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HinfI	GANTC	6 cut(s)	182, 431, 619, 664, 689, 821
HphI	GGTGA	2 cut(s)	422, 809
Hpy188I	TCNGA	6 cut(s)	274, 430, 523, 573, 590, 745
Hpy188III	TCNNGA	1 cut(s)	393
HpyAV	CCTTC	4 cut(s)	197, 641, 691, 707
HpyCH4III	ACNGT	3 cut(s)	47, 97, 141
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	6 cut(s)	28, 162, 251, 269, 644, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 380
HpyF3I	CTNAG	2 cut(s)	406, 668
HpySE526I	ACGT	1 cut(s)	13
Hsp92I	GRCGYC	1 cut(s)	607
Hsp92II	CATG	3 cut(s)	217, 355, 455
HspAI	GCGC	1 cut(s)	607
KasI	GGCGCC	1 cut(s)	606
KspI	CCGCGG	1 cut(s)	372
LpnPI	CCDG	5 cut(s)	261, 495, 564, 707, 737
LweI	GCATC	2 cut(s)	278, 790
MaeI	CTAG	5 cut(s)	240, 393, 629, 702, 735
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	553, 724
MboII	GAAGA	6 cut(s)	219, 381, 525, 732, 767, 773
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	288
Mly113I	GGCGCC	1 cut(s)	607
MmeI	TCCRAC	3 cut(s)	66, 116, 468
MseI	TTAA	3 cut(s)	473, 789, 810
MspA1I	CMGCKG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	241, 380
NarI	GGCGCC	1 cut(s)	607
NlaIII	CATG	3 cut(s)	217, 355, 455
NlaIV	GGNNCC	3 cut(s)	21, 245, 608
NspI	RCATGY	1 cut(s)	355
PceI	AGGCCT	2 cut(s)	541, 577
PciI	ACATGT	1 cut(s)	351
PfeI	GAWTC	6 cut(s)	182, 431, 619, 664, 689, 821
PkrI	GCNGC	1 cut(s)	373
PluTI	GGCGCC	1 cut(s)	610
PscI	ACATGT	1 cut(s)	351
PspN4I	GGNNCC	3 cut(s)	21, 245, 608
PspPI	GGNCC	1 cut(s)	243
PsrI	GAACNNNNNNTAC	2 cut(s)	664, 696
SacII	CCGCGG	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	473, 789, 810
SatI	GCNGC	1 cut(s)	372
Sau96I	GGNCC	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	6 cut(s)	16, 208, 412, 426, 567, 718
SfaNI	GCATC	2 cut(s)	278, 790
SfoI	GGCGCC	1 cut(s)	608
Sfr303I	CCGCGG	1 cut(s)	372
SgrBI	CCGCGG	1 cut(s)	372
SseBI	AGGCCT	2 cut(s)	541, 577
SsiI	CCGC	2 cut(s)	369, 371
SspDI	GGCGCC	1 cut(s)	606
SspMI	CTAG	5 cut(s)	240, 393, 629, 702, 735
StuI	AGGCCT	2 cut(s)	541, 577
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	3 cut(s)	47, 97, 141
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	335
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	6 cut(s)	182, 431, 619, 664, 689, 821
Tru1I	TTAA	3 cut(s)	473, 789, 810
Tru9I	TTAA	3 cut(s)	473, 789, 810
TscAI	CASTG	2 cut(s)	146, 682
TspDTI	ATGAA	6 cut(s)	17, 291, 353, 519, 774, 846
TspRI	CASTG	2 cut(s)	146, 682
XapI	RAATTY	2 cut(s)	53, 173
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	1 cut(s)	355
XmaJI	CCTAGG	1 cut(s)	628
XspI	CTAG	5 cut(s)	240, 393, 629, 702, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.