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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g28260 FvH4_6g28260 |
| malus_domestica | MD09G1227700.v1.1 MD17G1226500.v1.1 |
| prunus_persica | Prupe.3G103700_v2.0.a1 |
| pyrus_communis | pycom09g14710 pycom17g22990 |
| rosa_chinensis | RchiOBHm_Chr2g0132301 |
| rosa_laevigata | RLG00000019244 |
| rosa_roxburghii | Rroxscaffold_2G00112180 |
| rosa_rugosa | Rorug02G0303500 |
| rosa_samantha | Rh2AG356500 Rh2BG363000 Rh2CG340000 Rh2DG379800 |
| rosa_wichuraiana | Rw2G028990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 62 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 151 |
| AccBSI | CCGCTC | 1 cut(s) | 169 |
| AccII | CGCG | 2 cut(s) | 22, 72 |
| AccIII | TCCGGA | 1 cut(s) | 1088 |
| AclWI | GGATC | 4 cut(s) | 205, 701, 1220, 1233 |
| AcsI | RAATTY | 2 cut(s) | 459, 951 |
| AfaI | GTAC | 3 cut(s) | 823, 967, 1136 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 151, 339, 506, 1346 |
| AflII | CTTAAG | 1 cut(s) | 443 |
| AflIII | ACRYGT | 1 cut(s) | 1113 |
| AgsI | TTSAA | 4 cut(s) | 634, 701, 1012, 1273 |
| AjnI | CCWGG | 3 cut(s) | 945, 1027, 1451 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1270, 1302 |
| Alw21I | GWGCWC | 2 cut(s) | 886, 931 |
| Alw26I | GTCTC | 3 cut(s) | 231, 554, 719 |
| AlwI | GGATC | 4 cut(s) | 205, 701, 1220, 1233 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1402 |
| Aor13HI | TCCGGA | 1 cut(s) | 1088 |
| AoxI | GGCC | 1 cut(s) | 790 |
| ApeKI | GCWGC | 7 cut(s) | 178, 281, 284, 733, 1209, 1295, 1435 |
| ApoI | RAATTY | 2 cut(s) | 459, 951 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1350, 1420 |
| AspA2I | CCTAGG | 2 cut(s) | 256, 575 |
| AspS9I | GGNCC | 2 cut(s) | 509, 791 |
| AsuC2I | CCSGG | 3 cut(s) | 120, 500, 513 |
| AsuHPI | GGTGA | 4 cut(s) | 40, 46, 864, 951 |
| AsuII | TTCGAA | 1 cut(s) | 687 |
| AvaII | GGWCC | 1 cut(s) | 509 |
| AvrII | CCTAGG | 2 cut(s) | 256, 575 |
| BaeGI | GKGCMC | 1 cut(s) | 659 |
| BamHI | GGATCC | 1 cut(s) | 1225 |
| BanI | GGYRCC | 1 cut(s) | 62 |
| BanII | GRGCYC | 3 cut(s) | 886, 931, 1374 |
| Bbv12I | GWGCWC | 2 cut(s) | 886, 931 |
| BbvI | GCAGC | 7 cut(s) | 190, 268, 271, 745, 1196, 1307, 1422 |
| BccI | CCATC | 7 cut(s) | 153, 202, 428, 448, 500, 904, 967 |
| BceAI | ACGGC | 2 cut(s) | 61, 104 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 113, 147, 667, 701 |
| BciT130I | CCWGG | 3 cut(s) | 947, 1029, 1453 |
| BcnI | CCSGG | 3 cut(s) | 120, 500, 513 |
| BcoDI | GTCTC | 3 cut(s) | 231, 554, 719 |
| BfaI | CTAG | 5 cut(s) | 257, 576, 771, 963, 1104 |
| BfmI | CTRYAG | 3 cut(s) | 650, 1233, 1341 |
| BfrI | CTTAAG | 1 cut(s) | 443 |
| BisI | GCNGC | 8 cut(s) | 179, 282, 285, 641, 734, 1210, 1296, 1436 |
| BlnI | CCTAGG | 2 cut(s) | 256, 575 |
| BlsI | GCNGC | 8 cut(s) | 180, 283, 286, 642, 735, 1211, 1297, 1437 |
| BmcAI | AGTACT | 1 cut(s) | 1136 |
| Bme1390I | CCNGG | 6 cut(s) | 120, 500, 513, 947, 1029, 1453 |
| Bme18I | GGWCC | 1 cut(s) | 509 |
| BmgT120I | GGNCC | 2 cut(s) | 509, 791 |
| BmiI | GGNNCC | 2 cut(s) | 64, 1227 |
| BmrFI | CCNGG | 6 cut(s) | 120, 500, 513, 947, 1029, 1453 |
| BmsI | GCATC | 7 cut(s) | 105, 121, 305, 757, 878, 1328, 1469 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1193 |
| BpmI | CTGGAG | 1 cut(s) | 900 |
| Bpu14I | TTCGAA | 1 cut(s) | 687 |
| BpuEI | CTTGAG | 2 cut(s) | 213, 293 |
| BpuMI | CCSGG | 3 cut(s) | 120, 500, 513 |
| BsaI | GGTCTC | 1 cut(s) | 554 |
| BsaJI | CCNNGG | 6 cut(s) | 256, 512, 575, 945, 1362, 1451 |
| BsaWI | WCCGGW | 2 cut(s) | 290, 1088 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 347, 369, 377, 399 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 151, 339, 506, 1346 |
| Bse1I | ACTGG | 1 cut(s) | 1490 |
| Bse3DI | GCAATG | 1 cut(s) | 1288 |
| BseAI | TCCGGA | 1 cut(s) | 1088 |
| BseBI | CCWGG | 3 cut(s) | 947, 1029, 1453 |
| BseDI | CCNNGG | 6 cut(s) | 256, 512, 575, 945, 1362, 1451 |
| BseGI | GGATG | 5 cut(s) | 136, 145, 160, 508, 529 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 151, 339, 506, 1346 |
| BseMI | GCAATG | 1 cut(s) | 1288 |
| BseMII | CTCAG | 1 cut(s) | 1484 |
| BseNI | ACTGG | 1 cut(s) | 1490 |
| BseRI | GAGGAG | 2 cut(s) | 921, 1136 |
| BseSI | GKGCMC | 1 cut(s) | 659 |
| BseXI | GCAGC | 7 cut(s) | 190, 268, 271, 745, 1196, 1307, 1422 |
| BsgI | GTGCAG | 1 cut(s) | 1341 |
| Bsh1236I | CGCG | 2 cut(s) | 22, 72 |
| BshFI | GGCC | 1 cut(s) | 792 |
| BshNI | GGYRCC | 1 cut(s) | 62 |
| BsiHKAI | GWGCWC | 2 cut(s) | 886, 931 |
| BsiSI | CCGG | 6 cut(s) | 119, 291, 326, 500, 512, 1089 |
| BslFI | GGGAC | 3 cut(s) | 361, 529, 1165 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 151, 339, 506, 1346 |
| BsmAI | GTCTC | 3 cut(s) | 231, 554, 719 |
| BsmBI | CGTCTC | 1 cut(s) | 719 |
| BsmFI | GGGAC | 3 cut(s) | 361, 529, 1165 |
| BsnI | GGCC | 1 cut(s) | 792 |
| Bso31I | GGTCTC | 1 cut(s) | 554 |
| Bsp119I | TTCGAA | 1 cut(s) | 687 |
| Bsp1286I | GDGCHC | 4 cut(s) | 659, 886, 931, 1374 |
| Bsp13I | TCCGGA | 1 cut(s) | 1088 |
| Bsp143I | GATC | 3 cut(s) | 210, 706, 1225 |
| BspANI | GGCC | 1 cut(s) | 792 |
| BspCNI | CTCAG | 1 cut(s) | 1483 |
| BspEI | TCCGGA | 1 cut(s) | 1088 |
| BspFNI | CGCG | 2 cut(s) | 22, 72 |
| BspHI | TCATGA | 3 cut(s) | 1185, 1327, 1387 |
| BspLI | GGNNCC | 2 cut(s) | 64, 1227 |
| BspMAI | CTGCAG | 1 cut(s) | 654 |
| BspPI | GGATC | 4 cut(s) | 205, 701, 1220, 1233 |
| BspT104I | TTCGAA | 1 cut(s) | 687 |
| BspT107I | GGYRCC | 1 cut(s) | 62 |
| BspTI | CTTAAG | 1 cut(s) | 443 |
| BspTNI | GGTCTC | 1 cut(s) | 554 |
| BsrBI | CCGCTC | 1 cut(s) | 169 |
| BsrDI | GCAATG | 1 cut(s) | 1288 |
| BsrI | ACTGG | 1 cut(s) | 1490 |
| BssECI | CCNNGG | 6 cut(s) | 256, 512, 575, 945, 1362, 1451 |
| BssMI | GATC | 3 cut(s) | 210, 706, 1225 |
| BssT1I | CCWWGG | 3 cut(s) | 256, 575, 1362 |
| Bst2UI | CCWGG | 3 cut(s) | 947, 1029, 1453 |
| Bst4CI | ACNGT | 2 cut(s) | 34, 970 |
| Bst6I | CTCTTC | 2 cut(s) | 828, 1470 |
| BstAFI | CTTAAG | 1 cut(s) | 443 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 649 |
| BstBI | TTCGAA | 1 cut(s) | 687 |
| BstC8I | GCNNGC | 5 cut(s) | 534, 597, 680, 731, 1370 |
| BstDEI | CTNAG | 2 cut(s) | 338, 1470 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1344 |
| BstF5I | GGATG | 5 cut(s) | 136, 145, 160, 508, 529 |
| BstFNI | CGCG | 2 cut(s) | 22, 72 |
| BstKTI | GATC | 3 cut(s) | 213, 709, 1228 |
| BstMAI | GTCTC | 3 cut(s) | 231, 554, 719 |
| BstMBI | GATC | 3 cut(s) | 210, 706, 1225 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 69, 157, 166, 175, 293, 488, 623, 649 |
| BstNI | CCWGG | 3 cut(s) | 947, 1029, 1453 |
| BstNSI | RCATGY | 1 cut(s) | 1117 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1193 |
| BstSCI | CCNGG | 6 cut(s) | 118, 498, 511, 945, 1027, 1451 |
| BstSFI | CTRYAG | 3 cut(s) | 650, 1233, 1341 |
| BstSLI | GKGCMC | 1 cut(s) | 659 |
| BstUI | CGCG | 2 cut(s) | 22, 72 |
| BstV1I | GCAGC | 7 cut(s) | 190, 268, 271, 745, 1196, 1307, 1422 |
| BstX2I | RGATCY | 1 cut(s) | 1225 |
| BstYI | RGATCY | 1 cut(s) | 1225 |
| BsuRI | GGCC | 1 cut(s) | 792 |
| BtgZI | GCGATG | 3 cut(s) | 63, 138, 1275 |
| BtsCI | GGATG | 5 cut(s) | 136, 145, 160, 508, 529 |
| BtsI | GCAGTG | 2 cut(s) | 659, 978 |
| BtsIMutI | CAGTG | 6 cut(s) | 470, 659, 975, 978, 1056, 1150 |
| Cac8I | GCNNGC | 5 cut(s) | 534, 597, 680, 731, 1370 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1402 |
| CciI | TCATGA | 3 cut(s) | 1185, 1327, 1387 |
| Cfr13I | GGNCC | 2 cut(s) | 509, 791 |
| CseI | GACGC | 2 cut(s) | 78, 1006 |
| Csp6I | GTAC | 3 cut(s) | 822, 966, 1135 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 648, 683 |
| CviAII | CATG | 6 cut(s) | 135, 1114, 1186, 1328, 1388, 1408 |
| CviQI | GTAC | 3 cut(s) | 822, 966, 1135 |
| DdeI | CTNAG | 2 cut(s) | 338, 1470 |
| DpnI | GATC | 3 cut(s) | 212, 708, 1227 |
| DpnII | GATC | 3 cut(s) | 210, 706, 1225 |
| Eam1104I | CTCTTC | 2 cut(s) | 828, 1470 |
| EarI | CTCTTC | 2 cut(s) | 828, 1470 |
| Ecl136II | GAGCTC | 2 cut(s) | 884, 929 |
| Eco130I | CCWWGG | 3 cut(s) | 256, 575, 1362 |
| Eco24I | GRGCYC | 3 cut(s) | 886, 931, 1374 |
| Eco31I | GGTCTC | 1 cut(s) | 554 |
| Eco47I | GGWCC | 1 cut(s) | 509 |
| Eco53kI | GAGCTC | 2 cut(s) | 884, 929 |
| EcoICRI | GAGCTC | 2 cut(s) | 884, 929 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1344 |
| EcoRII | CCWGG | 3 cut(s) | 945, 1027, 1451 |
| EcoT14I | CCWWGG | 3 cut(s) | 256, 575, 1362 |
| EcoT22I | ATGCAT | 1 cut(s) | 136 |
| EcoT38I | GRGCYC | 3 cut(s) | 886, 931, 1374 |
| ErhI | CCWWGG | 3 cut(s) | 256, 575, 1362 |
| Esp3I | CGTCTC | 1 cut(s) | 719 |
| FaeI | CATG | 6 cut(s) | 138, 1117, 1189, 1331, 1391, 1411 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 181, 213 |
| FaqI | GGGAC | 3 cut(s) | 361, 529, 1165 |
| FatI | CATG | 6 cut(s) | 134, 1113, 1185, 1327, 1387, 1407 |
| Fnu4HI | GCNGC | 8 cut(s) | 179, 282, 285, 641, 734, 1210, 1296, 1436 |
| FokI | GGATG | 5 cut(s) | 132, 143, 167, 515, 536 |
| FriOI | GRGCYC | 3 cut(s) | 886, 931, 1374 |
| Fsp4HI | GCNGC | 8 cut(s) | 179, 282, 285, 641, 734, 1210, 1296, 1436 |
| FspBI | CTAG | 5 cut(s) | 257, 576, 771, 963, 1104 |
| GluI | GCNGC | 8 cut(s) | 179, 282, 285, 641, 734, 1210, 1296, 1436 |
| GsuI | CTGGAG | 1 cut(s) | 900 |
| HaeIII | GGCC | 1 cut(s) | 792 |
| HapII | CCGG | 6 cut(s) | 119, 291, 326, 500, 512, 1089 |
| HgaI | GACGC | 2 cut(s) | 78, 1006 |
| Hin1II | CATG | 6 cut(s) | 138, 1117, 1189, 1331, 1391, 1411 |
| HindIII | AAGCTT | 1 cut(s) | 692 |
| HpaII | CCGG | 6 cut(s) | 119, 291, 326, 500, 512, 1089 |
| HphI | GGTGA | 4 cut(s) | 40, 46, 864, 951 |
| Hpy188I | TCNGA | 5 cut(s) | 301, 472, 607, 1171, 1256 |
| Hpy188III | TCNNGA | 8 cut(s) | 214, 230, 366, 879, 1089, 1186, 1328, 1388 |
| Hpy99I | CGWCG | 2 cut(s) | 72, 895 |
| HpyAV | CCTTC | 7 cut(s) | 344, 368, 885, 1047, 1239, 1340, 1410 |
| HpyCH4III | ACNGT | 2 cut(s) | 34, 970 |
| HpyCH4IV | ACGT | 1 cut(s) | 1160 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 69, 157, 166, 175, 293, 488, 623, 649 |
| HpyF3I | CTNAG | 2 cut(s) | 338, 1470 |
| HpySE526I | ACGT | 1 cut(s) | 1160 |
| Hsp92II | CATG | 6 cut(s) | 138, 1117, 1189, 1331, 1391, 1411 |
| Kpn2I | TCCGGA | 1 cut(s) | 1088 |
| Kzo9I | GATC | 3 cut(s) | 210, 706, 1225 |
| LmnI | GCTCC | 4 cut(s) | 278, 881, 934, 1432 |
| Lsp1109I | GCAGC | 7 cut(s) | 190, 268, 271, 745, 1196, 1307, 1422 |
| LweI | GCATC | 7 cut(s) | 105, 121, 305, 757, 878, 1328, 1469 |
| MaeI | CTAG | 5 cut(s) | 257, 576, 771, 963, 1104 |
| MaeII | ACGT | 1 cut(s) | 1160 |
| MaeIII | GTNAC | 6 cut(s) | 28, 80, 269, 1055, 1145, 1161 |
| MalI | GATC | 3 cut(s) | 212, 708, 1227 |
| MbiI | CCGCTC | 1 cut(s) | 169 |
| MboI | GATC | 3 cut(s) | 210, 706, 1225 |
| MboII | GAAGA | 4 cut(s) | 754, 845, 948, 1457 |
| MflI | RGATCY | 1 cut(s) | 1225 |
| MhlI | GDGCHC | 4 cut(s) | 659, 886, 931, 1374 |
| MluCI | AATT | 7 cut(s) | 245, 459, 741, 937, 951, 1078, 1198 |
| MlyI | GAGTC | 6 cut(s) | 25, 62, 88, 95, 172, 1142 |
| MmeI | TCCRAC | 2 cut(s) | 21, 1098 |
| Mph1103I | ATGCAT | 1 cut(s) | 136 |
| MroI | TCCGGA | 1 cut(s) | 1088 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1350, 1420 |
| MseI | TTAA | 4 cut(s) | 444, 725, 1443, 1482 |
| MslI | CAYNNNNRTG | 2 cut(s) | 139, 1112 |
| MspA1I | CMGCKG | 2 cut(s) | 151, 1298 |
| MspCI | CTTAAG | 1 cut(s) | 443 |
| MspI | CCGG | 6 cut(s) | 119, 291, 326, 500, 512, 1089 |
| MspR9I | CCNGG | 6 cut(s) | 120, 500, 513, 947, 1029, 1453 |
| MvaI | CCWGG | 3 cut(s) | 947, 1029, 1453 |
| MvnI | CGCG | 2 cut(s) | 22, 72 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 69, 157, 166, 175, 293, 488, 623, 649 |
| NciI | CCSGG | 3 cut(s) | 120, 500, 513 |
| NdeII | GATC | 3 cut(s) | 210, 706, 1225 |
| NlaIII | CATG | 6 cut(s) | 138, 1117, 1189, 1331, 1391, 1411 |
| NlaIV | GGNNCC | 2 cut(s) | 64, 1227 |
| NmeAIII | GCCGAG | 3 cut(s) | 186, 981, 1437 |
| NmuCI | GTSAC | 5 cut(s) | 28, 80, 269, 1055, 1145 |
| NsiI | ATGCAT | 1 cut(s) | 136 |
| NspI | RCATGY | 1 cut(s) | 1117 |
| NspV | TTCGAA | 1 cut(s) | 687 |
| PagI | TCATGA | 3 cut(s) | 1185, 1327, 1387 |
| PciI | ACATGT | 1 cut(s) | 1113 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1350, 1420 |
| PfeI | GAWTC | 4 cut(s) | 752, 863, 1382, 1421 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 151 |
| PfoI | TCCNGGA | 1 cut(s) | 1027 |
| PkrI | GCNGC | 8 cut(s) | 180, 283, 286, 642, 735, 1211, 1297, 1437 |
| PleI | GAGTC | 6 cut(s) | 24, 61, 87, 95, 171, 1142 |
| PpsI | GAGTC | 6 cut(s) | 24, 61, 87, 95, 171, 1142 |
| PscI | ACATGT | 1 cut(s) | 1113 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1193 |
| Psp124BI | GAGCTC | 2 cut(s) | 886, 931 |
| Psp6I | CCWGG | 3 cut(s) | 945, 1027, 1451 |
| PspGI | CCWGG | 3 cut(s) | 945, 1027, 1451 |
| PspN4I | GGNNCC | 2 cut(s) | 64, 1227 |
| PspPI | GGNCC | 2 cut(s) | 509, 791 |
| PstI | CTGCAG | 1 cut(s) | 654 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1402 |
| PsuI | RGATCY | 1 cut(s) | 1225 |
| RsaI | GTAC | 3 cut(s) | 823, 967, 1136 |
| RsaNI | GTAC | 3 cut(s) | 822, 966, 1135 |
| RseI | CAYNNNNRTG | 2 cut(s) | 139, 1112 |
| SacI | GAGCTC | 2 cut(s) | 886, 931 |
| SaqAI | TTAA | 4 cut(s) | 444, 725, 1443, 1482 |
| SatI | GCNGC | 8 cut(s) | 179, 282, 285, 641, 734, 1210, 1296, 1436 |
| Sau3AI | GATC | 3 cut(s) | 210, 706, 1225 |
| Sau96I | GGNCC | 2 cut(s) | 509, 791 |
| ScaI | AGTACT | 1 cut(s) | 1136 |
| SchI | GAGTC | 6 cut(s) | 25, 62, 88, 95, 172, 1142 |
| ScrFI | CCNGG | 6 cut(s) | 120, 500, 513, 947, 1029, 1453 |
| SduI | GDGCHC | 4 cut(s) | 659, 886, 931, 1374 |
| SfaNI | GCATC | 7 cut(s) | 105, 121, 305, 757, 878, 1328, 1469 |
| SfcI | CTRYAG | 3 cut(s) | 650, 1233, 1341 |
| SfuI | TTCGAA | 1 cut(s) | 687 |
| SinI | GGWCC | 1 cut(s) | 509 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 139, 1112 |
| SmlI | CTYRAG | 3 cut(s) | 228, 308, 443 |
| SmoI | CTYRAG | 3 cut(s) | 228, 308, 443 |
| Sse9I | AATT | 7 cut(s) | 245, 459, 741, 937, 951, 1078, 1198 |
| SspI | AATATT | 1 cut(s) | 1447 |
| SspMI | CTAG | 5 cut(s) | 257, 576, 771, 963, 1104 |
| SstI | GAGCTC | 2 cut(s) | 886, 931 |
| StyD4I | CCNGG | 6 cut(s) | 118, 498, 511, 945, 1027, 1451 |
| StyI | CCWWGG | 3 cut(s) | 256, 575, 1362 |
| TaaI | ACNGT | 2 cut(s) | 34, 970 |
| TaiI | ACGT | 1 cut(s) | 1163 |
| TaqI | TCGA | 3 cut(s) | 99, 687, 765 |
| TasI | AATT | 7 cut(s) | 245, 459, 741, 937, 951, 1078, 1198 |
| TatI | WGTACW | 2 cut(s) | 965, 1134 |
| TauI | GCSGC | 1 cut(s) | 643 |
| TfiI | GAWTC | 4 cut(s) | 752, 863, 1382, 1421 |
| Tru1I | TTAA | 4 cut(s) | 444, 725, 1443, 1482 |
| Tru9I | TTAA | 4 cut(s) | 444, 725, 1443, 1482 |
| TscAI | CASTG | 6 cut(s) | 470, 659, 975, 985, 1056, 1150 |
| TseFI | GTSAC | 5 cut(s) | 28, 80, 269, 1055, 1145 |
| TseI | GCWGC | 7 cut(s) | 178, 281, 284, 733, 1209, 1295, 1435 |
| Tsp45I | GTSAC | 5 cut(s) | 28, 80, 269, 1055, 1145 |
| TspDTI | ATGAA | 6 cut(s) | 233, 332, 816, 846, 921, 1413 |
| TspGWI | ACGGA | 1 cut(s) | 747 |
| TspRI | CASTG | 6 cut(s) | 470, 659, 975, 985, 1056, 1150 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 151 |
| Vha464I | CTTAAG | 1 cut(s) | 443 |
| VpaK11BI | GGWCC | 1 cut(s) | 509 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1344 |
| XapI | RAATTY | 2 cut(s) | 459, 951 |
| XceI | RCATGY | 1 cut(s) | 1117 |
| XmaJI | CCTAGG | 2 cut(s) | 256, 575 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1350, 1420 |
| XspI | CTAG | 5 cut(s) | 257, 576, 771, 963, 1104 |
| ZrmI | AGTACT | 1 cut(s) | 1136 |
| Zsp2I | ATGCAT | 1 cut(s) | 136 |