Rh2AG356500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
52576778 .. 52583697
6920 bp
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UTR
Exon/CDS
Intron
Rh2AG356500.1

Sequence Viewer

Length: 1575 bp
ATGGTTCAGCTCATGACTCCGAGAAAGTTGACGGTGAAGTTCGACGTCGACGACTCGTCGGAAGACTCCTGGCTTGCTTCGGTTCACAAACGGCCCAAACTCGACTCGTCGTCTCCGCTGCTGGAGCAGCAGTGGGTTTCAGGAGGAGGAGGAGGAGGTGCTACGTGTGCGGTGTCGCCGCCGTTGGCGTATGATCCTCTGGAGGAGCCGAGCCCGCTGGGGTTGCAGCTGAGGAAGAGTCCGTCGCTATTGGATTTGATCCAGATGAAGCTGACGCAGCAGAAGGCTGTGAAATTGGCCAACAAGAAGAATCACAAGGGAGCTGCTGCTGCTGCTGCTGCTTCTGGTGGTGGTACGGATAAGCTCAAGGCTATGAACTTTCCGGCTTCGCTTCTGAGGATTGGGACTTGGGAGTATAAGTCGAAACATGAAGGGGATTTAGTGGCGAAGTGTTACTTTGCGAAGCATAAGCTTGTGTGGGAGGTGCTTGATGGTAGTCTGAAGAACAAGATGGAAATTCAGTGGTCTGATGTTGTGGCGATCAAGGCCAACTACCCGGATGAAGGACAGGCGACGATGGATGTAGTGCTTGCTAGACCGCCTCTTTTCTTTAGGGAGACGAATCCGCAACCTAGGAAACATACCTTGTGGCAGGCAACAACAGATTTTACTGGCGGGCAAGCCAGCACAAACAGGCGACACTTTCTGCAGTGCCCGCATGGCTTGCTTTTTGGCAAGCATTTTGAAAAGCTTATTCAATGTGATCCTCGTCTCAACTTTTTGAGTCAACAGCCAGAGATTGTGTTAGAATCTCCGTTCTTTGAAGCCAGAGTTTCAGGAACAAGTGACGCTGATGAATATAGACATCAGTTTAGTTCTAAGCTTGAAGATAGACCTATATTTGGGTTGCAGGGTTCTGCATCACCTTCTGGAACTCATTCGTCCTCATCTAGAAATGAAGATTTTGCTGGCAGAGCTCCTGAAAATTATTCCCGCGAAATTTCTTCGCCTAGCTCAGCAATGGACACCCCTGCAATTGCAGAGAAGGGAAACTTTGGAGCCAGAATCTCAAAGATGCCAAGCAAATTTGATCAAATCAAAGTTCCTGGACTTCGCTCGTCAATGTCAGTGAGCGACTTTGTAAGCCATATTGGTCAATGCATCACGGAAAAGATGTCCGGCACTCCCATGTATGCTGGCAAGGAGCAGCCTAGCAGTGACATTTTAGAGGAGATTACTCAATACTTGTTTAATGACTCGCAACTCAGCTTACCATCTGACGAGCAGTCCCTCATGTCAAGGGTCAACTCCCTTTGTTGCCTTCTGCAGAAGGATCCGACTACTGTACAAAACTTGCATGCCAGAAGTGATGATGGGAGAATGGGCGAAACCAACTCTGCTTCCGCATCTGGCTATCAGAGTAAGATTGGAGAAGGGTTTGCCACACCCAAGATTGAGGTCACTGATATTTCAGACAAGCAACCAGGAATCCCGAGACGGGATTCATTTGGGGAGCTTCTTCTTAATATTCCTAGGATAGCATCTCTTCCCCAGTTTCTTTTTAATTTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

524

Amino Acids

57.58

Weight (kDa)

6.87

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_TRF2_HOY1 PF24818 126 - 243 9.4e-59 TRF2/HOY1 PH-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 996
AclWI GGATC 5 cut(s) 188, 253, 758, 1328, 1341
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 3 cut(s) 516, 999, 1085
AcuI CTGAAG 1 cut(s) 521
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 2 cut(s) 355, 1347
AfiI CCNNNNNNNGG 3 cut(s) 563, 902, 1498
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 4 cut(s) 746, 758, 824, 887
AhdI GACNNNNNGTC 3 cut(s) 55, 109, 1285
AjnI CCWGG 3 cut(s) 68, 1105, 1483
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 4 cut(s) 117, 611, 776, 1489
AlwI GGATC 5 cut(s) 188, 253, 758, 1328, 1341
Ama87I CYCGRG 1 cut(s) 1492
AoxI GGCC 3 cut(s) 92, 297, 546
ApoI RAATTY 3 cut(s) 516, 999, 1085
Asp700I GAANNNNTTC 1 cut(s) 937
AspA2I CCTAGG 2 cut(s) 632, 1532
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 2 cut(s) 46, 915
AvaI CYCGRG 1 cut(s) 1492
AvrII CCTAGG 2 cut(s) 632, 1532
BaeGI GKGCMC 1 cut(s) 716
BalI TGGCCA 1 cut(s) 299
BamHI GGATCC 1 cut(s) 1333
BanII GRGCYC 2 cut(s) 215, 979
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 979
BbvCI CCTCAGC 1 cut(s) 230
BccI CCATC 5 cut(s) 485, 505, 571, 1282, 1367
BceAI ACGGC 2 cut(s) 107, 166
BciT130I CCWGG 3 cut(s) 70, 1107, 1485
BclI TGATCA 1 cut(s) 1090
BcnI CCSGG 1 cut(s) 557
BcoDI GTCTC 4 cut(s) 117, 611, 776, 1489
BfaI CTAG 6 cut(s) 594, 633, 951, 1011, 1212, 1533
BfmI CTRYAG 2 cut(s) 707, 1325
BglI GCCNNNNNGGC 1 cut(s) 720
BlnI CCTAGG 2 cut(s) 632, 1532
BlpI GCTNAGC 1 cut(s) 1015
Bme1390I CCNGG 4 cut(s) 70, 557, 1107, 1485
BmeRI GACNNNNNGTC 3 cut(s) 55, 109, 1285
BmeT110I CYCGRG 1 cut(s) 1492
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 3 cut(s) 207, 1060, 1335
BmrFI CCNGG 4 cut(s) 70, 557, 1107, 1485
BmrI ACTGGG 1 cut(s) 1546
BmsI GCATC 5 cut(s) 929, 1065, 1170, 1415, 1550
BmuI ACTGGG 1 cut(s) 1546
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 2 cut(s) 143, 221
Bpu10I CCTNAGC 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 1015
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 557
BsaAI YACGTR 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 632, 1532
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 404, 434
Bsc4I CCNNNNNNNGG 3 cut(s) 563, 902, 1498
Bse1I ACTGG 2 cut(s) 676, 1552
Bse3DI GCAATG 1 cut(s) 1026
BseBI CCWGG 3 cut(s) 70, 1107, 1485
BseDI CCNNGG 2 cut(s) 632, 1532
BseGI GGATG 2 cut(s) 565, 586
BseLI CCNNNNNNNGG 3 cut(s) 563, 902, 1498
BseMI GCAATG 1 cut(s) 1026
BseMII CTCAG 4 cut(s) 221, 386, 1029, 1279
BseNI ACTGG 2 cut(s) 676, 1552
BseRI GAGGAG 6 cut(s) 159, 162, 165, 168, 218, 1244
BseSI GKGCMC 1 cut(s) 716
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 996
BshFI GGCC 3 cut(s) 94, 299, 548
BsiHKAI GWGCWC 1 cut(s) 979
BsiHKCI CYCGRG 1 cut(s) 1492
BsiSI CCGG 3 cut(s) 383, 557, 1179
BslFI GGGAC 2 cut(s) 418, 1273
BslI CCNNNNNNNGG 3 cut(s) 563, 902, 1498
BsmAI GTCTC 4 cut(s) 117, 611, 776, 1489
BsmBI CGTCTC 4 cut(s) 117, 611, 776, 1489
BsmFI GGGAC 2 cut(s) 418, 1273
BsnI GGCC 3 cut(s) 94, 299, 548
BsoBI CYCGRG 1 cut(s) 1492
Bsp1286I GDGCHC 3 cut(s) 215, 716, 979
Bsp1407I TGTACA 1 cut(s) 1345
Bsp143I GATC 6 cut(s) 193, 258, 540, 763, 1090, 1333
Bsp1720I GCTNAGC 1 cut(s) 1015
BspANI GGCC 3 cut(s) 94, 299, 548
BspCNI CTCAG 4 cut(s) 222, 387, 1028, 1278
BspFNI CGCG 1 cut(s) 996
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 3 cut(s) 207, 1060, 1335
BspMAI CTGCAG 2 cut(s) 711, 1329
BspPI GGATC 5 cut(s) 188, 253, 758, 1328, 1341
BsrDI GCAATG 1 cut(s) 1026
BsrGI TGTACA 1 cut(s) 1345
BsrI ACTGG 2 cut(s) 676, 1552
BssECI CCNNGG 2 cut(s) 632, 1532
BssMI GATC 6 cut(s) 193, 258, 540, 763, 1090, 1333
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 2 cut(s) 632, 1532
Bst2UI CCWGG 3 cut(s) 70, 1107, 1485
Bst4CI ACNGT 2 cut(s) 34, 1345
Bst6I CTCTTC 2 cut(s) 230, 1551
BstACI GRCGYC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 724
BstAUI TGTACA 1 cut(s) 1345
BstBAI YACGTR 1 cut(s) 165
BstDEI CTNAG 5 cut(s) 230, 395, 879, 1015, 1265
BstF5I GGATG 2 cut(s) 565, 586
BstFNI CGCG 1 cut(s) 996
BstKTI GATC 6 cut(s) 196, 261, 543, 766, 1093, 1336
BstMAI GTCTC 4 cut(s) 117, 611, 776, 1489
BstMBI GATC 6 cut(s) 193, 258, 540, 763, 1090, 1333
BstNI CCWGG 3 cut(s) 70, 1107, 1485
BstNSI RCATGY 1 cut(s) 1361
BstSCI CCNGG 4 cut(s) 68, 555, 1105, 1483
BstSFI CTRYAG 2 cut(s) 707, 1325
BstSLI GKGCMC 1 cut(s) 716
BstUI CGCG 1 cut(s) 996
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 1333
BstYI RGATCY 1 cut(s) 1333
BsuRI GGCC 3 cut(s) 94, 299, 548
BtsCI GGATG 2 cut(s) 565, 586
BtsI GCAGTG 3 cut(s) 137, 716, 1222
BtsIMutI CAGTG 6 cut(s) 137, 527, 716, 1134, 1222, 1461
CciI TCATGA 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 93
CseI GACGC 2 cut(s) 283, 857
Csp6I GTAC 2 cut(s) 354, 1346
CviAII CATG 6 cut(s) 13, 428, 719, 1189, 1294, 1358
CviQI GTAC 2 cut(s) 354, 1346
DdeI CTNAG 5 cut(s) 230, 395, 879, 1015, 1265
DpnI GATC 6 cut(s) 195, 260, 542, 765, 1092, 1335
DpnII GATC 6 cut(s) 193, 258, 540, 763, 1090, 1333
DriI GACNNNNNGTC 3 cut(s) 55, 109, 1285
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 230, 1551
Eam1105I GACNNNNNGTC 3 cut(s) 55, 109, 1285
EarI CTCTTC 2 cut(s) 230, 1551
Ecl136II GAGCTC 1 cut(s) 977
Eco130I CCWWGG 2 cut(s) 632, 1532
Eco24I GRGCYC 2 cut(s) 215, 979
Eco53kI GAGCTC 1 cut(s) 977
Eco57I CTGAAG 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 1492
EcoICRI GAGCTC 1 cut(s) 977
EcoRII CCWGG 3 cut(s) 68, 1105, 1483
EcoT14I CCWWGG 2 cut(s) 632, 1532
EcoT22I ATGCAT 1 cut(s) 1163
EcoT38I GRGCYC 2 cut(s) 215, 979
ErhI CCWWGG 2 cut(s) 632, 1532
Esp3I CGTCTC 4 cut(s) 117, 611, 776, 1489
FaeI CATG 6 cut(s) 16, 431, 722, 1192, 1297, 1361
FalI AAGNNNNNCTT 4 cut(s) 440, 472, 1037, 1069
FaqI GGGAC 2 cut(s) 418, 1273
FatI CATG 6 cut(s) 12, 427, 718, 1188, 1293, 1357
FauI CCCGC 4 cut(s) 222, 668, 723, 1001
FbaI TGATCA 1 cut(s) 1090
FblI GTMKAC 1 cut(s) 48
FokI GGATG 2 cut(s) 572, 593
FriOI GRGCYC 2 cut(s) 215, 979
FspBI CTAG 6 cut(s) 594, 633, 951, 1011, 1212, 1533
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 2 cut(s) 143, 221
HaeIII GGCC 3 cut(s) 94, 299, 548
HapII CCGG 3 cut(s) 383, 557, 1179
HgaI GACGC 2 cut(s) 283, 857
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 6 cut(s) 16, 431, 722, 1192, 1297, 1361
HincII GTYRAC 4 cut(s) 30, 49, 788, 1306
HindII GTYRAC 4 cut(s) 30, 49, 788, 1306
HindIII AAGCTT 3 cut(s) 470, 749, 881
HpaII CCGG 3 cut(s) 383, 557, 1179
HphI GGTGA 2 cut(s) 46, 915
Hpy166II GTNNAC 5 cut(s) 30, 49, 85, 788, 1306
Hpy188I TCNGA 9 cut(s) 21, 61, 396, 501, 529, 1279, 1338, 1419, 1474
Hpy188III TCNNGA 9 cut(s) 13, 141, 200, 262, 837, 930, 951, 980, 1492
Hpy8I GTNNAC 5 cut(s) 30, 49, 85, 788, 1306
Hpy99I CGWCG 7 cut(s) 47, 50, 53, 61, 112, 247, 577
HpyAV CCTTC 8 cut(s) 277, 425, 557, 936, 1039, 1324, 1331, 1427
HpyCH4III ACNGT 2 cut(s) 34, 1345
HpyCH4IV ACGT 2 cut(s) 45, 164
HpyCH4V TGCA 9 cut(s) 226, 709, 910, 920, 1034, 1040, 1161, 1327, 1357
HpyF3I CTNAG 5 cut(s) 230, 395, 879, 1015, 1265
HpySE526I ACGT 2 cut(s) 45, 164
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 6 cut(s) 16, 431, 722, 1192, 1297, 1361
Ksp22I TGATCA 1 cut(s) 1090
Kzo9I GATC 6 cut(s) 193, 258, 540, 763, 1090, 1333
LmnI GCTCC 7 cut(s) 124, 205, 320, 982, 1058, 1204, 1513
LweI GCATC 5 cut(s) 929, 1065, 1170, 1415, 1550
MaeI CTAG 6 cut(s) 594, 633, 951, 1011, 1212, 1533
MaeII ACGT 2 cut(s) 45, 164
MaeIII GTNAC 4 cut(s) 452, 845, 1217, 1459
MalI GATC 6 cut(s) 195, 260, 542, 765, 1092, 1335
MboI GATC 6 cut(s) 193, 258, 540, 763, 1090, 1333
MboII GAAGA 9 cut(s) 74, 247, 319, 514, 899, 971, 996, 1511, 1538
MfeI CAATTG 1 cut(s) 1035
MflI RGATCY 1 cut(s) 1333
MhlI GDGCHC 3 cut(s) 215, 716, 979
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 7 cut(s) 293, 516, 985, 999, 1035, 1085, 1564
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 7 cut(s) 10, 47, 59, 98, 247, 793, 1250
MmeI TCCRAC 2 cut(s) 39, 1361
Mox20I TGGCCA 1 cut(s) 299
Mph1103I ATGCAT 1 cut(s) 1163
MroXI GAANNNNTTC 1 cut(s) 937
MscI TGGCCA 1 cut(s) 299
MseI TTAA 4 cut(s) 1251, 1524, 1563, 1573
MslI CAYNNNNRTG 1 cut(s) 1187
Msp20I TGGCCA 1 cut(s) 299
MspA1I CMGCKG 3 cut(s) 118, 217, 229
MspI CCGG 3 cut(s) 383, 557, 1179
MspR9I CCNGG 4 cut(s) 70, 557, 1107, 1485
MunI CAATTG 1 cut(s) 1035
MvaI CCWGG 3 cut(s) 70, 1107, 1485
MvnI CGCG 1 cut(s) 996
NciI CCSGG 1 cut(s) 557
NdeII GATC 6 cut(s) 193, 258, 540, 763, 1090, 1333
NlaIII CATG 6 cut(s) 16, 431, 722, 1192, 1297, 1361
NlaIV GGNNCC 3 cut(s) 207, 1060, 1335
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 3 cut(s) 845, 1217, 1459
NsiI ATGCAT 1 cut(s) 1163
NspI RCATGY 1 cut(s) 1361
PaeI GCATGC 1 cut(s) 1361
PagI TCATGA 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 937
PfeI GAWTC 6 cut(s) 310, 622, 809, 1065, 1488, 1502
PfoI TCCNGGA 1 cut(s) 1105
PleI GAGTC 7 cut(s) 10, 47, 59, 98, 246, 792, 1250
PpsI GAGTC 7 cut(s) 10, 47, 59, 98, 246, 792, 1250
Ppu21I YACGTR 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 979
Psp6I CCWGG 3 cut(s) 68, 1105, 1483
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 3 cut(s) 68, 1105, 1483
PspN4I GGNNCC 3 cut(s) 207, 1060, 1335
PspPI GGNCC 1 cut(s) 93
PstI CTGCAG 2 cut(s) 711, 1329
PsuI RGATCY 1 cut(s) 1333
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 2 cut(s) 355, 1347
RsaNI GTAC 2 cut(s) 354, 1346
RseI CAYNNNNRTG 1 cut(s) 1187
SacI GAGCTC 1 cut(s) 979
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 1251, 1524, 1563, 1573
Sau3AI GATC 6 cut(s) 193, 258, 540, 763, 1090, 1333
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 7 cut(s) 10, 47, 59, 98, 247, 793, 1250
ScrFI CCNGG 4 cut(s) 70, 557, 1107, 1485
SduI GDGCHC 3 cut(s) 215, 716, 979
SfaNI GCATC 5 cut(s) 929, 1065, 1170, 1415, 1550
SfcI CTRYAG 2 cut(s) 707, 1325
SgrDI CGTCGACG 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 1187
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SphI GCATGC 1 cut(s) 1361
Sse9I AATT 7 cut(s) 293, 516, 985, 999, 1035, 1085, 1564
SspI AATATT 1 cut(s) 1528
SspMI CTAG 6 cut(s) 594, 633, 951, 1011, 1212, 1533
SstI GAGCTC 1 cut(s) 979
StyD4I CCNGG 4 cut(s) 68, 555, 1105, 1483
StyI CCWWGG 2 cut(s) 632, 1532
TaaI ACNGT 2 cut(s) 34, 1345
TaiI ACGT 2 cut(s) 48, 167
TaqI TCGA 4 cut(s) 42, 48, 102, 422
TasI AATT 7 cut(s) 293, 516, 985, 999, 1035, 1085, 1564
TatI WGTACW 1 cut(s) 1345
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 6 cut(s) 310, 622, 809, 1065, 1488, 1502
Tru1I TTAA 4 cut(s) 1251, 1524, 1563, 1573
Tru9I TTAA 4 cut(s) 1251, 1524, 1563, 1573
TscAI CASTG 6 cut(s) 137, 527, 716, 1134, 1222, 1468
TseFI GTSAC 3 cut(s) 845, 1217, 1459
Tsp45I GTSAC 3 cut(s) 845, 1217, 1459
TspDTI ATGAA 7 cut(s) 281, 389, 444, 576, 870, 972, 1494
TspGWI ACGGA 4 cut(s) 231, 371, 804, 1181
TspRI CASTG 6 cut(s) 137, 527, 716, 1134, 1222, 1468
XapI RAATTY 3 cut(s) 516, 999, 1085
XbaI TCTAGA 1 cut(s) 950
XceI RCATGY 1 cut(s) 1361
XmaJI CCTAGG 2 cut(s) 632, 1532
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 937
XspI CTAG 6 cut(s) 594, 633, 951, 1011, 1212, 1533
ZraI GACGTC 1 cut(s) 46
Zsp2I ATGCAT 1 cut(s) 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.