Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009305

Physical Location & Seq

Genomic Coordinates Reverse (-)

18321111 .. 18324240

Gene Structure 3130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCGACCACCGCCAGAATCCATCCGACGGCCGCCGCTGTGCTCTCCTCCACCACCAAACACCACCTCCGGCCACCTCCCAACGCTGTCGTATTCAGAACCAATCCCAACTCCCTGCGGCGCCACGGCACAACAAGAACCCTCACGGCGGCAATGGCCGCCCCTCTCGACGTTTGTGCCAAGGCTTCCATTACTGTTCCCAACAAGCTCGGCGACTGTCCCTTCTGTCAAAGGGTGTTGCTGACACTAGAGGAAAAGCATCTCCCTTATGACCTGAAGTTGGTAGACTTGGGCAACAAGCCAGAATGGTTCTTAAAAATTTACCCAGAAGGTAAAGTTCCTGTGGTAAAACTTGATGAGAAGTGGGTTGCGGATTCTGATATTATTACACAAGCACTGGAAGAAAAATACCCTGATCCACCTCTGGCAACGCCCCCTGAGAAGGCTTCAGTTGGATCGAAGATCTTCTCTACTTTTATCGGTTTCCTTAAGAGCAAAGACGCCAAGGATGGAACAGAAGAAGCATTGCTAAATGAACTTAAGTCTTTCAATGATTATCTCAAAGAAAACGGTCCTTTTATCAATGGGAAAGTGGTTTCTGCTGCTGATTTTTCACTTGGACCCAAGTTGTATCATCTAGAGATTGCTCTGGGGCATTTCAAAGATTGGTCAATTCCCGATTCTCTTCCATATGTGAAGTCTTACATGAAGAGTATATTCTCACTGGATTCATTCGTTAAAACTAGTGCCCTGAAAGAAGATGTCATTGCGGGTTGGCGTCCAAAAGTCTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010731 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016667 GO:0016672 GO:0016740 GO:0016765 GO:0019538 GO:0031967 GO:0031975 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045174 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901564 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 ko01100 map00053 map00480 map01100

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

266

Amino Acids

29.32

Weight (kDa)

8.78

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLIC-like_N	PF22441	59 - 138	4.1e-09	CLIC-like N-terminal domain
GST_N_3	PF13417	72 - 141	4.3e-19	Glutathione S-transferase, N-terminal domain
GST_N	PF02798	72 - 131	1.7e-06	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	73 - 135	4.2e-18	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16710
fragaria_vesca	FvH4_1g28700 FvH4_1g28700 FvH4_1g28700 FvH4_1g28700
malus_domestica	MD09G1264700.v1.1 MD17G1260600.v1.1
prunus_persica	Prupe.3G162300_v2.0.a1 Prupe.3G162300_v2.0.a1
pyrus_communis	pycom09g17830 pycom17g26130
rosa_chinensis	RchiOBHm_Chr3g0493051
rosa_laevigata	RLG00000022732
rosa_multiflora	Rmu_sc0003941.1_g000013
rosa_roxburghii	Rroxscaffold_6G00391890
rosa_rugosa	Rorug03G0258700 Rorug03G0258700
rosa_samantha	Rh3AG307800 Rh3BG343200 Rh3CG340600 Rh3DG343000
rosa_wichuraiana	Rw3G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	120
AccI	GTMKAC	2 cut(s)	5, 285
AciI	CCGC	8 cut(s)	12, 33, 36, 118, 149, 159, 371, 770
AclWI	GGATC	2 cut(s)	410, 463
AcoI	YGGCCR	3 cut(s)	30, 71, 156
AcsI	RAATTY	1 cut(s)	318
AcuI	CTGAAG	2 cut(s)	296, 432
AcyI	GRCGYC	3 cut(s)	121, 501, 778
AfiI	CCNNNNNNNGG	4 cut(s)	28, 148, 280, 442
AflII	CTTAAG	2 cut(s)	488, 539
AgsI	TTSAA	2 cut(s)	550, 661
AhlI	ACTAGT	1 cut(s)	743
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	410, 463
AoxI	GGCC	3 cut(s)	30, 71, 156
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	572, 620
AvaII	GGWCC	2 cut(s)	572, 620
BaeGI	GKGCMC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	2 cut(s)	30, 503
BceAI	ACGGC	3 cut(s)	45, 142, 162
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	3 cut(s)	248, 638, 744
BfoI	RGCGCY	1 cut(s)	124
BfrI	CTTAAG	2 cut(s)	488, 539
BglII	AGATCT	1 cut(s)	462
BisI	GCNGC	6 cut(s)	33, 36, 119, 150, 159, 603
BlsI	GCNGC	6 cut(s)	34, 37, 120, 151, 160, 604
Bme18I	GGWCC	2 cut(s)	572, 620
BmgT120I	GGNCC	2 cut(s)	572, 620
BmiI	GGNNCC	2 cut(s)	122, 622
BmsI	GCATC	1 cut(s)	268
BsaHI	GRCGYC	3 cut(s)	121, 501, 778
BsaJI	CCNNGG	3 cut(s)	124, 180, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 148, 280, 442
Bse1I	ACTGG	2 cut(s)	402, 729
Bse3DI	GCAATG	3 cut(s)	159, 524, 765
BseDI	CCNNGG	3 cut(s)	124, 180, 504
BseGI	GGATG	2 cut(s)	22, 514
BseLI	CCNNNNNNNGG	4 cut(s)	28, 148, 280, 442
BseMI	GCAATG	3 cut(s)	159, 524, 765
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	402, 729
BseRI	GAGGAG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	751
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	589
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	32, 73, 158
BshNI	GGYRCC	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	4 cut(s)	28, 148, 280, 442
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	3 cut(s)	32, 73, 158
Bsp1286I	GDGCHC	2 cut(s)	45, 751
Bsp143I	GATC	3 cut(s)	415, 455, 462
BspACI	CCGC	8 cut(s)	12, 33, 36, 118, 149, 159, 371, 770
BspANI	GGCC	3 cut(s)	32, 73, 158
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	122, 622
BspPI	GGATC	2 cut(s)	410, 463
BspT107I	GGYRCC	1 cut(s)	120
BspTI	CTTAAG	2 cut(s)	488, 539
BsrDI	GCAATG	3 cut(s)	159, 524, 765
BsrI	ACTGG	2 cut(s)	402, 729
BssECI	CCNNGG	3 cut(s)	124, 180, 504
BssMI	GATC	3 cut(s)	415, 455, 462
BssNI	GRCGYC	3 cut(s)	121, 501, 778
BssT1I	CCWWGG	2 cut(s)	180, 504
Bst4CI	ACNGT	3 cut(s)	196, 218, 572
Bst6I	CTCTTC	2 cut(s)	690, 704
BstACI	GRCGYC	3 cut(s)	121, 501, 778
BstAFI	CTTAAG	2 cut(s)	488, 539
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	22, 514
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	418, 458, 465
BstMBI	GATC	3 cut(s)	415, 455, 462
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 158
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	1 cut(s)	589
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	32, 73, 158
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	22, 514
BtsIMutI	CAGTG	2 cut(s)	395, 722
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	572, 620
CseI	GACGC	2 cut(s)	509, 767
CviAII	CATG	1 cut(s)	706
CviJI	RGCY	7 cut(s)	32, 73, 158, 185, 208, 301, 446
CviKI_1	RGCY	7 cut(s)	32, 73, 158, 185, 208, 301, 446
DdeI	CTNAG	1 cut(s)	438
DinI	GGCGCC	1 cut(s)	122
DpnI	GATC	3 cut(s)	417, 457, 464
DpnII	GATC	3 cut(s)	415, 455, 462
EaeI	YGGCCR	3 cut(s)	30, 71, 156
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	690, 704
EarI	CTCTTC	2 cut(s)	690, 704
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	180, 504
Eco47I	GGWCC	2 cut(s)	572, 620
Eco52I	CGGCCG	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	296, 432
EcoT14I	CCWWGG	2 cut(s)	180, 504
EgeI	GGCGCC	1 cut(s)	122
EheI	GGCGCC	1 cut(s)	122
ErhI	CCWWGG	2 cut(s)	180, 504
FaeI	CATG	1 cut(s)	709
FaiI	YATR	5 cut(s)	270, 691, 693, 707, 716
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	1 cut(s)	705
FauI	CCCGC	1 cut(s)	763
FauNDI	CATATG	1 cut(s)	691
FblI	GTMKAC	2 cut(s)	5, 285
Fnu4HI	GCNGC	6 cut(s)	33, 36, 119, 150, 159, 603
FokI	GGATG	2 cut(s)	9, 521
Fsp4HI	GCNGC	6 cut(s)	33, 36, 119, 150, 159, 603
FspBI	CTAG	3 cut(s)	248, 638, 744
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	6 cut(s)	33, 36, 119, 150, 159, 603
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	32, 73, 158
HapII	CCGG	1 cut(s)	70
HgaI	GACGC	2 cut(s)	509, 767
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	3 cut(s)	121, 501, 778
Hin1II	CATG	1 cut(s)	709
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	18, 374, 680, 728
HpaII	CCGG	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	6, 286
Hpy188I	TCNGA	3 cut(s)	27, 98, 379
Hpy188III	TCNNGA	3 cut(s)	167, 638, 677
Hpy8I	GTNNAC	2 cut(s)	6, 286
Hpy99I	CGWCG	2 cut(s)	31, 173
HpyAV	CCTTC	3 cut(s)	232, 323, 436
HpyCH4III	ACNGT	3 cut(s)	196, 218, 572
HpyCH4IV	ACGT	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 158
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	3 cut(s)	121, 501, 778
Hsp92II	CATG	1 cut(s)	709
HspAI	GCGC	1 cut(s)	121
KasI	GGCGCC	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	415, 455, 462
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	3 cut(s)	248, 638, 744
MaeII	ACGT	1 cut(s)	171
MalI	GATC	3 cut(s)	417, 457, 464
MboI	GATC	3 cut(s)	415, 455, 462
MboII	GAAGA	7 cut(s)	413, 457, 472, 530, 677, 721, 770
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	2 cut(s)	45, 751
MluCI	AATT	2 cut(s)	318, 672
Mly113I	GGCGCC	1 cut(s)	121
MmeI	TCCRAC	2 cut(s)	50, 433
MnlI	CCTC	7 cut(s)	58, 77, 87, 152, 174, 244, 432
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	5 cut(s)	314, 489, 540, 738, 796
MspA1I	CMGCKG	1 cut(s)	38
MspCI	CTTAAG	2 cut(s)	488, 539
MspI	CCGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	155, 158
NarI	GGCGCC	1 cut(s)	121
NdeI	CATATG	1 cut(s)	691
NdeII	GATC	3 cut(s)	415, 455, 462
NlaIII	CATG	1 cut(s)	709
NlaIV	GGNNCC	2 cut(s)	122, 622
NmeAIII	GCCGAG	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	4 cut(s)	18, 374, 680, 728
PkrI	GCNGC	6 cut(s)	34, 37, 120, 151, 160, 604
PluTI	GGCGCC	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	122, 622
PspPI	GGNCC	2 cut(s)	572, 620
PsuI	RGATCY	1 cut(s)	462
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	5 cut(s)	314, 489, 540, 738, 796
SatI	GCNGC	6 cut(s)	33, 36, 119, 150, 159, 603
Sau3AI	GATC	3 cut(s)	415, 455, 462
Sau96I	GGNCC	2 cut(s)	572, 620
SduI	GDGCHC	2 cut(s)	45, 751
SetI	ASST	7 cut(s)	69, 79, 174, 210, 276, 334, 424
SfaNI	GCATC	1 cut(s)	268
SfoI	GGCGCC	1 cut(s)	122
SinI	GGWCC	2 cut(s)	572, 620
SmlI	CTYRAG	2 cut(s)	488, 539
SmoI	CTYRAG	2 cut(s)	488, 539
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	2 cut(s)	318, 672
SsiI	CCGC	8 cut(s)	12, 33, 36, 118, 149, 159, 371, 770
SspDI	GGCGCC	1 cut(s)	120
SspMI	CTAG	3 cut(s)	248, 638, 744
StyI	CCWWGG	2 cut(s)	180, 504
TaaI	ACNGT	3 cut(s)	196, 218, 572
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	5, 168, 458
TasI	AATT	2 cut(s)	318, 672
TauI	GCSGC	5 cut(s)	35, 38, 121, 152, 161
TfiI	GAWTC	4 cut(s)	18, 374, 680, 728
Tru1I	TTAA	5 cut(s)	314, 489, 540, 738, 796
Tru9I	TTAA	5 cut(s)	314, 489, 540, 738, 796
TscAI	CASTG	2 cut(s)	402, 729
TseI	GCWGC	1 cut(s)	602
TspDTI	ATGAA	3 cut(s)	549, 720, 722
TspRI	CASTG	2 cut(s)	402, 729
Vha464I	CTTAAG	2 cut(s)	488, 539
VpaK11BI	GGWCC	2 cut(s)	572, 620
XapI	RAATTY	1 cut(s)	318
XbaI	TCTAGA	1 cut(s)	637
XmiI	GTMKAC	2 cut(s)	5, 285
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	3 cut(s)	248, 638, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.