Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004658

Physical Location & Seq

Genomic Coordinates Forward (+)

1147553 .. 1149005

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTGCTGGTCTCGGCCGTAAGGGATTACCTGAGTCGGATGTTGCAGGACATCTCCGGCATGAAGGTTCTCATCCTCGATTCCCACACGGTCAGTATAGTCAGCGTGGCGTATTCGCAATCCGAGCTTCTTCAGAAGGAAGTGTTTCTGGTGGAATTGGTAGACTCCATTTCCAAGTCCAGAGAATCCATGTCTCACCTCAAAGCCGTCTACTTCCTTGCACCCACTTCAGAGAATATACAGTATTTGCGCCGGCACTTGGTCGCTCCTCGATTCGGAGAGTATCACCTCTTTTTCTCCAACATATTGAAGGATACCCAGATTCATATTTTAGCTGATTCAGATGAGCATGAAGTTGTACAGCAGCTTCAGGAGTTCTATGCAGACTTTGTTGCAACTGATCCATACCATTTCACTTTGAATATGCCATCAAATCACATGTATATGCTCCCAGCAGTTGTGGATCATTCAAATTTACAGCGCTTCTGTGATCAAGTAGTTGATGGAATTGCAGCTGTTTTTTGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009705 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0032588 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04144 map04138 map04144

Pfam Domains

Protein Families

Sec1

Protein Analysis

177

Amino Acids

20.28

Weight (kDa)

5.45

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	22 - 174	4.9e-33	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77140
fragaria_vesca	FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590 FvH4_2g14590
malus_domestica	MD05G1016500.v1.1 MD10G1016000.v1.1 MD10G1016100.v1.1
prunus_persica	Prupe.8G019800_v2.0.a1 Prupe.8G019800_v2.0.a1
pyrus_communis	pycom05g00910 pycom10g01040 pycom10g01050
rosa_chinensis	RchiOBHm_Chr6g0277061
rosa_laevigata	RLG00000013340
rosa_multiflora	Rmu_sc0000206.1_g000006
rosa_roxburghii	Rroxscaffold_7G00191710
rosa_rugosa	Rorug06G0106100 Rorug06G0106200 Rorug06G0106300 Rorug06G0106300 Rorug06G0106300 Rorug06G0106300
rosa_samantha	Rh6AG216000 Rh6BG220600 Rh6CG223400 Rh6DG213000
rosa_wichuraiana	Rw6G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	162, 210
AclWI	GGATC	2 cut(s)	395, 471
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	3 cut(s)	116, 213, 353
AfaI	GTAC	1 cut(s)	360
AfeI	AGCGCT	1 cut(s)	482
AfiI	CCNNNNNNNGG	2 cut(s)	259, 275
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	3 cut(s)	310, 421, 471
AluBI	AGCT	4 cut(s)	127, 335, 367, 515
AluI	AGCT	4 cut(s)	127, 335, 367, 515
Alw26I	GTCTC	2 cut(s)	16, 198
AlwI	GGATC	2 cut(s)	395, 471
Aor51HI	AGCGCT	1 cut(s)	482
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	364, 512
ApoI	RAATTY	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	144
AspLEI	GCGC	2 cut(s)	252, 483
AsuHPI	GGTGA	2 cut(s)	188, 278
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
BbvI	GCAGC	2 cut(s)	376, 524
BccI	CCATC	2 cut(s)	436, 497
BceAI	ACGGC	2 cut(s)	2, 191
BciVI	GTATCC	1 cut(s)	307
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	2 cut(s)	16, 198
BfoI	RGCGCY	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	2 cut(s)	365, 513
BlsI	GCNGC	2 cut(s)	366, 514
BsaI	GGTCTC	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 275
Bse118I	RCCGGY	1 cut(s)	252
BseGI	GGATG	2 cut(s)	45, 72
BseLI	CCNNNNNNNGG	2 cut(s)	259, 275
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	258
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	376, 524
BseYI	CCCAGC	1 cut(s)	451
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	57, 253
BslI	CCNNNNNNNGG	2 cut(s)	259, 275
BsmAI	GTCTC	2 cut(s)	16, 198
BsnI	GGCC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	400, 463, 490
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	24
BspPI	GGATC	2 cut(s)	395, 471
BspTNI	GGTCTC	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	252
BssMI	GATC	3 cut(s)	400, 463, 490
Bst4CI	ACNGT	2 cut(s)	91, 243
BstAUI	TGTACA	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	45, 72
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	2 cut(s)	252, 483
BstKTI	GATC	3 cut(s)	403, 466, 493
BstMAI	GTCTC	2 cut(s)	16, 198
BstMBI	GATC	3 cut(s)	400, 463, 490
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	442
BstV1I	GCAGC	2 cut(s)	376, 524
BstZI	CGGCCG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	45, 72
Cac8I	GCNNGC	1 cut(s)	254
CfoI	GCGC	2 cut(s)	252, 483
Cfr10I	RCCGGY	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	4 cut(s)	61, 190, 350, 439
CviJI	RGCY	6 cut(s)	17, 127, 206, 335, 367, 515
CviKI_1	RGCY	6 cut(s)	17, 127, 206, 335, 367, 515
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	3 cut(s)	402, 465, 492
DpnII	GATC	3 cut(s)	400, 463, 490
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	16
Eco47III	AGCGCT	1 cut(s)	482
Eco52I	CGGCCG	1 cut(s)	15
Eco57I	CTGAAG	3 cut(s)	116, 213, 353
FaeI	CATG	4 cut(s)	64, 193, 353, 442
FatI	CATG	4 cut(s)	60, 189, 349, 438
FbaI	TGATCA	1 cut(s)	490
FblI	GTMKAC	2 cut(s)	162, 210
Fnu4HI	GCNGC	2 cut(s)	365, 513
FokI	GGATG	2 cut(s)	52, 59
Fsp4HI	GCNGC	2 cut(s)	365, 513
GlaI	GCGC	2 cut(s)	251, 482
GluI	GCNGC	2 cut(s)	365, 513
GsaI	CCCAGC	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	2 cut(s)	57, 253
HhaI	GCGC	2 cut(s)	252, 483
Hin1II	CATG	4 cut(s)	64, 193, 353, 442
Hin6I	GCGC	2 cut(s)	250, 481
HinP1I	GCGC	2 cut(s)	250, 481
HinfI	GANTC	7 cut(s)	34, 80, 164, 185, 273, 322, 338
HpaII	CCGG	2 cut(s)	57, 253
HphI	GGTGA	2 cut(s)	188, 278
Hpy166II	GTNNAC	2 cut(s)	163, 211
Hpy188I	TCNGA	6 cut(s)	39, 124, 135, 232, 278, 343
Hpy188III	TCNNGA	2 cut(s)	180, 371
Hpy8I	GTNNAC	2 cut(s)	163, 211
HpyAV	CCTTC	3 cut(s)	58, 130, 304
HpyCH4III	ACNGT	2 cut(s)	91, 243
HpyCH4V	TGCA	5 cut(s)	46, 221, 383, 395, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	64, 193, 353, 442
HspAI	GCGC	2 cut(s)	250, 481
KroI	GCCGGC	1 cut(s)	252
KroNI	GCCGGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	400, 463, 490
LmnI	GCTCC	2 cut(s)	271, 453
LpnPI	CCDG	9 cut(s)	32, 44, 70, 134, 193, 266, 332, 356, 465
Lsp1109I	GCAGC	2 cut(s)	376, 524
MalI	GATC	3 cut(s)	402, 465, 492
MboI	GATC	3 cut(s)	400, 463, 490
MboII	GAAGA	1 cut(s)	122
MluCI	AATT	3 cut(s)	155, 472, 507
MlyI	GAGTC	2 cut(s)	43, 158
MmeI	TCCRAC	2 cut(s)	17, 324
MnlI	CCTC	4 cut(s)	86, 209, 279, 299
MroNI	GCCGGC	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	1 cut(s)	529
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	2 cut(s)	57, 253
MwoI	GCNNNNNNNGC	1 cut(s)	124
NaeI	GCCGGC	1 cut(s)	254
NdeII	GATC	3 cut(s)	400, 463, 490
NgoMIV	GCCGGC	1 cut(s)	252
NlaIII	CATG	4 cut(s)	64, 193, 353, 442
NspI	RCATGY	1 cut(s)	442
PciI	ACATGT	1 cut(s)	438
PdiI	GCCGGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	5 cut(s)	80, 185, 273, 322, 338
PkrI	GCNGC	2 cut(s)	366, 514
PleI	GAGTC	2 cut(s)	42, 158
PpsI	GAGTC	2 cut(s)	42, 158
PscI	ACATGT	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	529
SatI	GCNGC	2 cut(s)	365, 513
Sau3AI	GATC	3 cut(s)	400, 463, 490
SchI	GAGTC	2 cut(s)	43, 158
SetI	ASST	8 cut(s)	33, 69, 129, 201, 291, 337, 369, 517
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	155, 472, 507
TaaI	ACNGT	2 cut(s)	91, 243
TaqI	TCGA	2 cut(s)	78, 271
TasI	AATT	3 cut(s)	155, 472, 507
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	5 cut(s)	80, 185, 273, 322, 338
Tru1I	TTAA	1 cut(s)	529
Tru9I	TTAA	1 cut(s)	529
TseI	GCWGC	2 cut(s)	364, 512
TspDTI	ATGAA	3 cut(s)	77, 314, 366
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	442
XmiI	GTMKAC	2 cut(s)	162, 210
XmnI	GAANNNNTTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.