pycom10g02150

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0015039
Physical Location & Seq
Forward (+)
2279863 .. 2283364
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1209 bp
ATGCAAAGTAACGGTGTGAAGTTTGAACTTAAGCAAAGGACATGTGTCACGAAACTAGAAATGAGACACGTAATCGGGGACAGCAGCCCCACGCCCTGGAATATGCCTATAAAGAGAAGGGTCTCTGTCCCTCAAAACACACAGAAACACAAAACCATGGCTTCATCGACCTCTCTCCTTTTGGTTTCTTCTCTTTTCCTTTCTTCCTTCTTTTGTGTCTCGGAGGCACAGTCCTCTGCCCCCGTAGTTCAAGGACTTTCATGGAACTTCTATGACTCTAGCTGCCCTAAGGTTGACGACATAGTCCGAAAGCAGCTTAAGAAAGTCTTCAAAGCGGACGTTGGCCAAGCTGCGGGCTTGCTGCGTCTCCATTTCCACGATTGTTTTGTTCAGGGTTGTGATGGATCTGTGTTGCTTGAGGGATCAGCCAGCGGACCAAGTGAGCAGGATGCACCTCCCAACCTGAGCTTGAGGGCGAAGGCCTTTGAGATCATCAATGACCTCCGCGACCGCGTTCACAACAAGTGTGGAAGGGTCGTCTCCTGTTCTGATATCCTCGCCCTCGCTGCTAGGGATTCTGTTTTCCTGTCAGGTGGCCCGGACTATGATGTGCCCTTGGGAAGAAAGGATGGACTAAACTTTGCCACACAAAATGCAACCCAAGCAAACCTTCCCCCACCAACCAGTAACACAACCAAGCTTCTAACAGATCTTGCCAAGAAAAACTTAGATGCCACTGATGTTGTAGCCCTGTCTGGAGGTCACACCATTGGCCTCAGCCATTGTTCCTCCTTCACCGGCAGGCTCTACCCGACGCAAGACGCTACCATGGACAAAACTTTTGCAAATGACCTCAAAACAGTTTGCCCTGCAAACAATACTAACGCTACCGTCCCGCTCGATATTCGTACCCCTGACATATTCGACAACAAGTACTATGTTGATCTCATGAACCGCCAAGGTTTATTCACGTCGGACCAAGATTTGTACACCGATAAGAGGACTAAGGAAATTGTGAAAAGCTTTGCCGTTAACCAGACGTTGTTCTTTGAGCAGTTTGTCAAGTCCATGATCAAGATGGGGCAACTTAGCGTGTTGACTGGCTCCAAGGGTGAAATTCGTGCAGATTGCTCGGTCAGGAATTCGGATAATGCTAACTACTTGGCCTCTGTGGTGGAAGATGACGAGGAGAGCTTGTCTGAGTTTTAA

Protein Analysis

403

Amino Acids

44.12

Weight (kDa)

6.66

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 102 - 344 4.4e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71695
fragaria_vesca FvH4_2g13110
malus_domestica MD00G1190800.v1.1 MD10G1033300.v1.1
prunus_persica Prupe.8G038900_v2.0.a1
pyrus_communis pycom10g02150
rosa_chinensis RchiOBHm_Chr6g0274401
rosa_laevigata RLG00000013546
rosa_multiflora Rmu_sc0001289.1_g000007
rosa_roxburghii Rroxscaffold_7G00194260
rosa_rugosa Rorug06G0081300
rosa_samantha Rh6AG197400 Rh6BG201100 Rh6CG202000 Rh6DG192600
rosa_wichuraiana Rw6G017200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 96
AccBSI CCGCTC 1 cut(s) 898
AccII CGCG 2 cut(s) 507, 513
AciI CCGC 7 cut(s) 335, 353, 432, 505, 511, 896, 955
AclWI GGATC 2 cut(s) 412, 430
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 2 cut(s) 1116, 1141
AfaI GTAC 3 cut(s) 910, 935, 989
AfiI CCNNNNNNNGG 3 cut(s) 96, 352, 999
AflII CTTAAG 2 cut(s) 29, 317
AflIII ACRYGT 2 cut(s) 41, 67
AgsI TTSAA 3 cut(s) 26, 251, 331
AjiI CACGTC 1 cut(s) 972
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 7 cut(s) 282, 316, 350, 468, 700, 1023, 1194
AluI AGCT 7 cut(s) 282, 316, 350, 468, 700, 1023, 1194
Alw26I GTCTC 5 cut(s) 58, 127, 223, 371, 544
AlwI GGATC 2 cut(s) 412, 430
AoxI GGCC 5 cut(s) 343, 480, 595, 772, 1164
ApeKI GCWGC 6 cut(s) 84, 282, 313, 350, 361, 566
ApoI RAATTY 2 cut(s) 1116, 1141
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
Asp700I GAANNNNTTC 1 cut(s) 326
AspS9I GGNCC 3 cut(s) 434, 596, 976
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 2 cut(s) 787, 1124
AvaII GGWCC 2 cut(s) 434, 976
AxyI CCTNAGG 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 615
BalI TGGCCA 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 319
BbvCI CCTCAGC 1 cut(s) 776
BbvI GCAGC 6 cut(s) 96, 269, 325, 337, 348, 553
BccI CCATC 3 cut(s) 395, 623, 1072
BceAI ACGGC 1 cut(s) 1013
BcgI CGANNNNNNTGC 2 cut(s) 1113, 1147
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 1071
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 5 cut(s) 58, 127, 223, 371, 544
BfaI CTAG 3 cut(s) 56, 279, 570
BfrI CTTAAG 2 cut(s) 29, 317
BglII AGATCT 1 cut(s) 709
BisI GCNGC 6 cut(s) 85, 283, 314, 351, 362, 567
BlsI GCNGC 6 cut(s) 86, 284, 315, 352, 363, 568
BmcAI AGTACT 1 cut(s) 935
Bme1390I CCNGG 2 cut(s) 97, 599
Bme18I GGWCC 2 cut(s) 434, 976
BmgBI CACGTC 1 cut(s) 972
BmgT120I GGNCC 3 cut(s) 434, 596, 976
BmiI GGNNCC 1 cut(s) 1105
BmrFI CCNGG 2 cut(s) 97, 599
BmsI GCATC 2 cut(s) 439, 721
BoxI GACNNNNGTC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 319
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 2 cut(s) 464, 776
BpuEI CTTGAG 2 cut(s) 437, 490
BpuMI CCSGG 1 cut(s) 599
BsaAI YACGTR 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 6 cut(s) 95, 156, 615, 828, 958, 1107
BsaXI ACNNNNNCTCC 3 cut(s) 215, 245, 1181
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 352, 999
Bse118I RCCGGY 1 cut(s) 797
Bse1I ACTGG 2 cut(s) 684, 1105
Bse21I CCTNAGG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 6 cut(s) 95, 156, 615, 828, 958, 1107
BseGI GGATG 2 cut(s) 454, 634
BseLI CCNNNNNNNGG 3 cut(s) 96, 352, 999
BseMII CTCAG 3 cut(s) 455, 790, 1191
BseNI ACTGG 2 cut(s) 684, 1105
BseRI GAGGAG 1 cut(s) 1202
BseSI GKGCMC 1 cut(s) 615
BseXI GCAGC 6 cut(s) 96, 269, 325, 337, 348, 553
BsgI GTGCAG 1 cut(s) 1143
Bsh1236I CGCG 2 cut(s) 507, 513
Bsh1285I CGRYCG 1 cut(s) 511
BshFI GGCC 5 cut(s) 345, 482, 597, 774, 1166
BsiEI CGRYCG 1 cut(s) 511
BsiSI CCGG 2 cut(s) 599, 798
BslFI GGGAC 3 cut(s) 92, 113, 878
BslI CCNNNNNNNGG 3 cut(s) 96, 352, 999
BsmAI GTCTC 5 cut(s) 58, 127, 223, 371, 544
BsmBI CGTCTC 2 cut(s) 371, 544
BsmFI GGGAC 3 cut(s) 92, 113, 878
BsnI GGCC 5 cut(s) 345, 482, 597, 774, 1166
Bso31I GGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 615
Bsp1407I TGTACA 1 cut(s) 987
Bsp143I GATC 6 cut(s) 404, 422, 489, 709, 943, 1071
Bsp19I CCATGG 2 cut(s) 156, 828
BspACI CCGC 7 cut(s) 335, 353, 432, 505, 511, 896, 955
BspANI GGCC 5 cut(s) 345, 482, 597, 774, 1166
BspCNI CTCAG 3 cut(s) 456, 789, 1192
BspFNI CGCG 2 cut(s) 507, 513
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 1 cut(s) 1105
BspPI GGATC 2 cut(s) 412, 430
BspTI CTTAAG 2 cut(s) 29, 317
BspTNI GGTCTC 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 898
BsrFI RCCGGY 1 cut(s) 797
BsrGI TGTACA 1 cut(s) 987
BsrI ACTGG 2 cut(s) 684, 1105
BssAI RCCGGY 1 cut(s) 797
BssECI CCNNGG 6 cut(s) 95, 156, 615, 828, 958, 1107
BssMI GATC 6 cut(s) 404, 422, 489, 709, 943, 1071
BssT1I CCWWGG 5 cut(s) 156, 615, 828, 958, 1107
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 4 cut(s) 14, 231, 862, 892
BstAFI CTTAAG 2 cut(s) 29, 317
BstAUI TGTACA 1 cut(s) 987
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 4 cut(s) 355, 359, 430, 803
BstDEI CTNAG 7 cut(s) 288, 464, 727, 776, 1005, 1088, 1200
BstDSI CCRYGG 2 cut(s) 156, 828
BstF5I GGATG 2 cut(s) 454, 634
BstFNI CGCG 2 cut(s) 507, 513
BstKTI GATC 6 cut(s) 407, 425, 492, 712, 946, 1074
BstMAI GTCTC 5 cut(s) 58, 127, 223, 371, 544
BstMBI GATC 6 cut(s) 404, 422, 489, 709, 943, 1071
BstMCI CGRYCG 1 cut(s) 511
BstMWI GCNNNNNNNGC 2 cut(s) 566, 662
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 45
BstPAI GACNNNNGTC 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 95, 597
BstSLI GKGCMC 1 cut(s) 615
BstUI CGCG 2 cut(s) 507, 513
BstV1I GCAGC 6 cut(s) 96, 269, 325, 337, 348, 553
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 2 cut(s) 404, 709
BstYI RGATCY 2 cut(s) 404, 709
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 5 cut(s) 345, 482, 597, 774, 1166
BtgI CCRYGG 2 cut(s) 156, 828
BtrI CACGTC 1 cut(s) 972
BtsCI GGATG 2 cut(s) 454, 634
BtsIMutI CAGTG 1 cut(s) 735
Cac8I GCNNGC 4 cut(s) 355, 359, 430, 803
CciI TCATGA 1 cut(s) 948
Cfr10I RCCGGY 1 cut(s) 797
Cfr13I GGNCC 3 cut(s) 434, 596, 976
CseI GACGC 3 cut(s) 353, 823, 830
Csp6I GTAC 3 cut(s) 909, 934, 988
CspCI CAANNNNNGTGG 4 cut(s) 508, 543, 724, 759
CviAII CATG 6 cut(s) 42, 157, 261, 829, 949, 1069
CviQI GTAC 3 cut(s) 909, 934, 988
DdeI CTNAG 7 cut(s) 288, 464, 727, 776, 1005, 1088, 1200
DpnI GATC 6 cut(s) 406, 424, 491, 711, 945, 1073
DpnII GATC 6 cut(s) 404, 422, 489, 709, 943, 1071
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 343
Eco130I CCWWGG 5 cut(s) 156, 615, 828, 958, 1107
Eco147I AGGCCT 1 cut(s) 482
Eco31I GGTCTC 1 cut(s) 127
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 434, 976
Eco81I CCTNAGG 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 1141
EcoRII CCWGG 1 cut(s) 95
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 5 cut(s) 156, 615, 828, 958, 1107
ErhI CCWWGG 5 cut(s) 156, 615, 828, 958, 1107
Esp3I CGTCTC 2 cut(s) 371, 544
FaeI CATG 6 cut(s) 45, 160, 264, 832, 952, 1072
FalI AAGNNNNNCTT 6 cut(s) 311, 343, 654, 686, 710, 742
FaqI GGGAC 3 cut(s) 92, 113, 878
FatI CATG 6 cut(s) 41, 156, 260, 828, 948, 1068
FauI CCCGC 2 cut(s) 346, 903
FbaI TGATCA 1 cut(s) 1071
Fnu4HI GCNGC 6 cut(s) 85, 283, 314, 351, 362, 567
FokI GGATG 2 cut(s) 461, 641
Fsp4HI GCNGC 6 cut(s) 85, 283, 314, 351, 362, 567
FspBI CTAG 3 cut(s) 56, 279, 570
GluI GCNGC 6 cut(s) 85, 283, 314, 351, 362, 567
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 5 cut(s) 345, 482, 597, 774, 1166
HapII CCGG 2 cut(s) 599, 798
HgaI GACGC 3 cut(s) 353, 823, 830
Hin1II CATG 6 cut(s) 45, 160, 264, 832, 952, 1072
HincII GTYRAC 3 cut(s) 295, 1033, 1098
HindII GTYRAC 3 cut(s) 295, 1033, 1098
HindIII AAGCTT 2 cut(s) 698, 1021
HinfI GANTC 2 cut(s) 275, 575
HpaI GTTAAC 1 cut(s) 1033
HpaII CCGG 2 cut(s) 599, 798
HphI GGTGA 2 cut(s) 787, 1124
Hpy166II GTNNAC 5 cut(s) 295, 517, 990, 1033, 1098
Hpy188I TCNGA 6 cut(s) 223, 308, 550, 976, 1147, 1201
Hpy188III TCNNGA 5 cut(s) 49, 756, 949, 1075, 1138
Hpy8I GTNNAC 5 cut(s) 295, 517, 990, 1033, 1098
Hpy99I CGWCG 2 cut(s) 817, 976
HpyAV CCTTC 6 cut(s) 111, 217, 472, 525, 680, 802
HpyCH4III ACNGT 4 cut(s) 14, 231, 862, 892
HpyCH4IV ACGT 4 cut(s) 69, 339, 971, 1040
HpyCH4V TGCA 6 cut(s) 4, 452, 656, 845, 872, 1124
HpyF10VI GCNNNNNNNGC 2 cut(s) 566, 662
HpyF3I CTNAG 7 cut(s) 288, 464, 727, 776, 1005, 1088, 1200
HpySE526I ACGT 4 cut(s) 69, 339, 971, 1040
Hsp92II CATG 6 cut(s) 45, 160, 264, 832, 952, 1072
Ksp22I TGATCA 1 cut(s) 1071
KspAI GTTAAC 1 cut(s) 1033
Kzo9I GATC 6 cut(s) 404, 422, 489, 709, 943, 1071
LmnI GCTCC 1 cut(s) 1109
Lsp1109I GCAGC 6 cut(s) 96, 269, 325, 337, 348, 553
LweI GCATC 2 cut(s) 439, 721
MaeI CTAG 3 cut(s) 56, 279, 570
MaeII ACGT 4 cut(s) 69, 339, 971, 1040
MaeIII GTNAC 4 cut(s) 8, 46, 686, 761
MalI GATC 6 cut(s) 406, 424, 491, 711, 945, 1073
MbiI CCGCTC 1 cut(s) 898
MboI GATC 6 cut(s) 404, 422, 489, 709, 943, 1071
MboII GAAGA 5 cut(s) 180, 195, 319, 633, 1190
MflI RGATCY 2 cut(s) 404, 709
MhlI GDGCHC 1 cut(s) 615
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 3 cut(s) 1011, 1116, 1141
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 954
Mox20I TGGCCA 1 cut(s) 345
MroXI GAANNNNTTC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 345
MseI TTAA 4 cut(s) 30, 318, 1032, 1207
Msp20I TGGCCA 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 432
MspCI CTTAAG 2 cut(s) 29, 317
MspI CCGG 2 cut(s) 599, 798
MspR9I CCNGG 2 cut(s) 97, 599
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 2 cut(s) 507, 513
MwoI GCNNNNNNNGC 2 cut(s) 566, 662
NciI CCSGG 1 cut(s) 599
NcoI CCATGG 2 cut(s) 156, 828
NdeII GATC 6 cut(s) 404, 422, 489, 709, 943, 1071
NlaIII CATG 6 cut(s) 45, 160, 264, 832, 952, 1072
NlaIV GGNNCC 1 cut(s) 1105
NmuCI GTSAC 2 cut(s) 46, 761
NspI RCATGY 1 cut(s) 45
PagI TCATGA 1 cut(s) 948
PceI AGGCCT 1 cut(s) 482
PciI ACATGT 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 575
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 6 cut(s) 86, 284, 315, 352, 363, 568
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 70
PscI ACATGT 1 cut(s) 41
PshAI GACNNNNGTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 1105
PspPI GGNCC 3 cut(s) 434, 596, 976
PsuI RGATCY 2 cut(s) 404, 709
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 3 cut(s) 910, 935, 989
RsaNI GTAC 3 cut(s) 909, 934, 988
SaqAI TTAA 4 cut(s) 30, 318, 1032, 1207
SatI GCNGC 6 cut(s) 85, 283, 314, 351, 362, 567
Sau3AI GATC 6 cut(s) 404, 422, 489, 709, 943, 1071
Sau96I GGNCC 3 cut(s) 434, 596, 976
ScaI AGTACT 1 cut(s) 935
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 97, 599
SduI GDGCHC 1 cut(s) 615
SfaNI GCATC 2 cut(s) 439, 721
SinI GGWCC 2 cut(s) 434, 976
SmlI CTYRAG 4 cut(s) 29, 317, 416, 469
SmoI CTYRAG 4 cut(s) 29, 317, 416, 469
Sse9I AATT 3 cut(s) 1011, 1116, 1141
SseBI AGGCCT 1 cut(s) 482
SsiI CCGC 7 cut(s) 335, 353, 432, 505, 511, 896, 955
SspMI CTAG 3 cut(s) 56, 279, 570
StuI AGGCCT 1 cut(s) 482
StyD4I CCNGG 2 cut(s) 95, 597
StyI CCWWGG 5 cut(s) 156, 615, 828, 958, 1107
TaaI ACNGT 4 cut(s) 14, 231, 862, 892
TaiI ACGT 4 cut(s) 72, 342, 974, 1043
TaqI TCGA 3 cut(s) 167, 900, 924
TaqII GACCGA 1 cut(s) 1123
TasI AATT 3 cut(s) 1011, 1116, 1141
TatI WGTACW 2 cut(s) 933, 987
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 4 cut(s) 30, 318, 1032, 1207
Tru9I TTAA 4 cut(s) 30, 318, 1032, 1207
TscAI CASTG 1 cut(s) 742
TseFI GTSAC 2 cut(s) 46, 761
TseI GCWGC 6 cut(s) 84, 282, 313, 350, 361, 566
Tsp45I GTSAC 2 cut(s) 46, 761
TspDTI ATGAA 3 cut(s) 153, 249, 965
TspRI CASTG 1 cut(s) 742
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 96
Vha464I CTTAAG 2 cut(s) 29, 317
VpaK11BI GGWCC 2 cut(s) 434, 976
XapI RAATTY 2 cut(s) 1116, 1141
XceI RCATGY 1 cut(s) 45
XcmI CCANNNNNNNNNTGG 1 cut(s) 1075
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 3 cut(s) 56, 279, 570
ZrmI AGTACT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.