Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0015954

Physical Location & Seq

Genomic Coordinates Forward (+)

3840513 .. 3841988

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATGCTGGGGTTACGCGGTTCAATCGCAACCGTTTCCGATGCGAGTCGTCGACTCCTTCAATCTGTATCGTTTCATGGGGTCCATGTGCAATGCCTGAATATAAAAGCAGGAATGGAGATTCCAGACAATAAGCCCCTTAAGTATGCGCTTCAGTACATACGTGGGATCGGCAGAGCCAGGGCTGGCTTGATCATATCTGAGCTAAACATGACCAACAAACGTGCCAAGGACTTGACCCGAAGAGAAGTTGTTGCCATTGGCGATGAAATCTCCAAGTACTTAGTTGGAAGGGAATTGGCGACCATTGTCGAGAGAGACATCAAGAGAATGAAGGACATTCAGTGCTACAAAGGGATCAGGCACATCGATAAGTTGCCTTGCCGAGGGCAGCGCACCAGCACCAATGCCAGGACTAGGAAAGCTAATCCACGGATTGCGGTTGCATCATCAAACAAGGTGAAGAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

158

Amino Acids

17.61

Weight (kDa)

10.6

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	38 - 139	1.1e-23	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77750
fragaria_vesca	FvH4_2g26171
malus_domestica	MD10G1050000.v1.1
prunus_persica	Prupe.1G504900_v2.0.a1
pyrus_communis	pycom10g03520
rosa_chinensis	RchiOBHm_Chr6g0294601
rosa_laevigata	RLG00000011855
rosa_multiflora	Rmu_sc0006264.1_g000011 Rmu_sc0007845.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173170
rosa_samantha	Rh6AG358600 Rh6BG365800 Rh6CG372400 Rh6DG359200
rosa_wichuraiana	Rw6G031290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	1 cut(s)	18
AciI	CCGC	2 cut(s)	18, 440
AclWI	GGATC	2 cut(s)	176, 365
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	2 cut(s)	158, 281
AfiI	CCNNNNNNNGG	3 cut(s)	386, 411, 417
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	24, 62
AjnI	CCWGG	2 cut(s)	179, 410
AluBI	AGCT	2 cut(s)	205, 425
AluI	AGCT	2 cut(s)	205, 425
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	2 cut(s)	176, 365
ApeKI	GCWGC	1 cut(s)	391
AspLEI	GCGC	2 cut(s)	151, 396
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	403
BciT130I	CCWGG	2 cut(s)	181, 412
BclI	TGATCA	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	417
BfrI	CTTAAG	1 cut(s)	140
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	181, 412
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	2 cut(s)	181, 412
BmsI	GCATC	2 cut(s)	31, 455
BoxI	GACNNNNGTC	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	164
BsaJI	CCNNGG	4 cut(s)	180, 228, 385, 431
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 411, 417
Bse3DI	GCAATG	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	181, 412
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	4 cut(s)	180, 228, 385, 431
BseLI	CCNNNNNNNGG	3 cut(s)	386, 411, 417
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	403
BseYI	CCCAGC	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	18
BshVI	ATCGAT	1 cut(s)	369
BslI	CCNNNNNNNGG	3 cut(s)	386, 411, 417
BsmAI	GTCTC	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	168, 192, 357
BspACI	CCGC	2 cut(s)	18, 440
BspCNI	CTCAG	1 cut(s)	193
BspDI	ATCGAT	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	176, 365
BspTI	CTTAAG	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	98
BssECI	CCNNGG	4 cut(s)	180, 228, 385, 431
BssMI	GATC	3 cut(s)	168, 192, 357
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	181, 412
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	238
BstAFI	CTTAAG	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	201, 283
BstDSI	CCRYGG	1 cut(s)	431
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	151, 396
BstKTI	GATC	3 cut(s)	171, 195, 360
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	3 cut(s)	168, 192, 357
BstNI	CCWGG	2 cut(s)	181, 412
BstPAI	GACNNNNGTC	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	179, 410
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	403
Bsu15I	ATCGAT	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	431
BtgZI	GCGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	2 cut(s)	151, 396
Cfr13I	GGNCC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	157, 280
CviAII	CATG	3 cut(s)	77, 86, 211
CviJI	RGCY	6 cut(s)	136, 179, 185, 189, 205, 425
CviKI_1	RGCY	6 cut(s)	136, 179, 185, 189, 205, 425
CviQI	GTAC	2 cut(s)	157, 280
DdeI	CTNAG	2 cut(s)	201, 283
DpnI	GATC	3 cut(s)	170, 194, 359
DpnII	GATC	3 cut(s)	168, 192, 357
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	179, 410
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	3 cut(s)	80, 89, 214
FaiI	YATR	7 cut(s)	78, 87, 104, 147, 161, 197, 212
FatI	CATG	3 cut(s)	76, 85, 210
FbaI	TGATCA	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	2 cut(s)	150, 395
GluI	GCNGC	1 cut(s)	392
GsaI	CCCAGC	1 cut(s)	11
HhaI	GCGC	2 cut(s)	151, 396
Hin1II	CATG	3 cut(s)	80, 89, 214
Hin6I	GCGC	2 cut(s)	149, 394
HinP1I	GCGC	2 cut(s)	149, 394
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HinfI	GANTC	3 cut(s)	46, 54, 121
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	40, 202
Hpy188III	TCNNGA	3 cut(s)	125, 313, 325
Hpy8I	GTNNAC	1 cut(s)	53
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	3 cut(s)	68, 285, 328
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	2 cut(s)	163, 223
HpyCH4V	TGCA	2 cut(s)	91, 446
HpyF3I	CTNAG	2 cut(s)	201, 283
HpySE526I	ACGT	2 cut(s)	163, 223
Hsp92II	CATG	3 cut(s)	80, 89, 214
HspAI	GCGC	2 cut(s)	149, 394
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	168, 192, 357
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	2 cut(s)	31, 455
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	2 cut(s)	163, 223
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	3 cut(s)	170, 194, 359
MboI	GATC	3 cut(s)	168, 192, 357
MboII	GAAGA	1 cut(s)	255
MluCI	AATT	1 cut(s)	296
MlyI	GAGTC	2 cut(s)	48, 55
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	1 cut(s)	380
MseI	TTAA	1 cut(s)	141
MspCI	CTTAAG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	181, 412
MvaI	CCWGG	2 cut(s)	181, 412
MvnI	CGCG	1 cut(s)	18
NdeII	GATC	3 cut(s)	168, 192, 357
NlaIII	CATG	3 cut(s)	80, 89, 214
NlaIV	GGNNCC	1 cut(s)	83
NmeAIII	GCCGAG	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	2 cut(s)	48, 54
PpsI	GAGTC	2 cut(s)	48, 54
Ppu21I	YACGTR	1 cut(s)	164
PshAI	GACNNNNGTC	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	179, 410
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	2 cut(s)	179, 410
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	82
RsaI	GTAC	2 cut(s)	158, 281
RsaNI	GTAC	2 cut(s)	157, 280
SalI	GTCGAC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	3 cut(s)	168, 192, 357
Sau96I	GGNCC	1 cut(s)	82
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	2 cut(s)	48, 55
ScrFI	CCNGG	2 cut(s)	181, 412
SetI	ASST	5 cut(s)	166, 207, 226, 427, 462
SfaNI	GCATC	2 cut(s)	31, 455
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	2 cut(s)	18, 440
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	179, 410
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	2 cut(s)	166, 226
TaqI	TCGA	3 cut(s)	52, 312, 369
TasI	AATT	1 cut(s)	296
TatI	WGTACW	2 cut(s)	156, 279
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	350
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	3 cut(s)	65, 282, 347
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	350
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	82
XagI	CCTNNNNNAGG	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	1 cut(s)	417
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.