Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0015198

Physical Location & Seq

Genomic Coordinates Forward (+)

4428607 .. 4431136

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAGAAAACAGACGCCATCGATGGAAAAGTTGACGAGGCTTCTTCTCGTGAGGGTTCCGTTTGTGGGTACGACACACTCCATCACCTCTTGAGCGCCAATCTCAAACCCCATCTCTTCCAGGAAGTCAGCCGTATTCTTTTGGGTCTGAATTGCGGCAAGGCACTTGAAACAATTTCTCTCCCAGAATCTGCTAAGGCTCTCTCTTCAGGACATGATTTTGACCTCCAGGCCTACTGCTTTCTGGCTGACAAAGAGTTGTTGAGAGAACCCCGAATAGTTAGGGTTGGTCTCATTCAAAACTCAATCGCTCTTCCAACTACTGCCCACTTTTTGGACCAGAAGAGGGCAATCTTTGAGAAAGTAAAGCCAATAATTGATTCTGCAGGTGCTTCAGGTGTCAACGTGTTATGCTTGCAGGAAGCATGGACGATGCCGTTTGCCTTTTGCACGCGGGAGAAGAGGTGGTGTGAATTTGCAGAGCCTGTAGATGGGGAATCAACGCGATTTATCCAGGATCTTGCAAGGAAGTATAACATGGTCATTATAAGTCCAATTCTTGAGAGAGATGTCAATCATGGAGATACTATCTGGAACACTGCAGTCATAATTGGTAATAATGGAAACATAATTGGCAAGCACCGAAAGAACCATATACCAAGAGTTGGCGACTTCAACGAGAGTACTTATTATATGGAAGGGAATACTGGGCATCCAGTGTTCGAGACGGCTTATGGAAAAATTGCTGTTAATATATGCTATGGAAGGCATCATCCTTTGAATTGGTTAGCATTTGGCTTGAATGGTGCAGAGATTGTTTTCAACCCTTCCGCCACTGTGGGTGAACTCAGTGAACCAATGTGGCCCATTGAGGCTCGTAACGCTGCAATTGCAAATAGCTACTTTGTTGGATCAATCAACCGTGTAGGAACTGAGGTTTTCCCAAATCCATTCACTTCTGGTGATGGGAAGCCAGGGCATGCAGATTTCGGGCATTTCTATGGATCCAGCCATGTTTCAGCCCCAGATGCCTCGTGTACTCCATCTCTTTCACGCCATAGGGATGGCTTGTTGATCTCGGACATGGACCTCAACCTCTGCAGGCAGTTAAAAGACAAGTGGGGATTCCGAATGACAGCTCGTTATGACCTGTATGCAGACCTGCTTGCTCGTTACGTGAAGCCGGATTTTGAGCCCCAAGTCATTTCCGATCCCTTGTTGCATAAGAAGTCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003837 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009605 GO:0009987 GO:0009991 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0019860 GO:0031667 GO:0031668 GO:0031669 GO:0034641 GO:0042737 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

413

Amino Acids

45.8

Weight (kDa)

6.15

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CN_hydrolase	PF00795	97 - 371	2.2e-56	Carbon-nitrogen hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64370
fragaria_vesca	FvH4_2g11570
malus_domestica	MD05G1048000.v1.1 MD10G1054600.v1.1
prunus_persica	Prupe.8G070200_v2.0.a1
pyrus_communis	pycom10g04150
rosa_chinensis	RchiOBHm_Chr6g0270931
rosa_laevigata	RLG00000013759
rosa_multiflora	Rmu_sc0010958.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197490
rosa_rugosa	Rorug06G0057300
rosa_samantha	Rh6AG176900 Rh6BG180200 Rh6CG176300 Rh6DG168500
rosa_wichuraiana	Rw6G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	548
AarI	CACCTGC	1 cut(s)	377
Acc36I	ACCTGC	2 cut(s)	377, 1170
AccB7I	CCANNNNNTGG	2 cut(s)	334, 665
AccII	CGCG	2 cut(s)	454, 505
AciI	CCGC	3 cut(s)	156, 454, 831
AclWI	GGATC	5 cut(s)	525, 919, 999, 1012, 1205
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	2 cut(s)	192, 378
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	3 cut(s)	71, 685, 1039
AfiI	CCNNNNNNNGG	5 cut(s)	66, 334, 346, 491, 665
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	6 cut(s)	170, 299, 676, 781, 802, 823
AjnI	CCWGG	4 cut(s)	120, 228, 513, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	364, 396
AluBI	AGCT	2 cut(s)	900, 1139
AluI	AGCT	2 cut(s)	900, 1139
Alw26I	GTCTC	2 cut(s)	296, 719
AlwI	GGATC	5 cut(s)	525, 919, 999, 1012, 1205
AlwNI	CAGNNNCTG	2 cut(s)	191, 485
AoxI	GGCC	2 cut(s)	231, 863
ApeKI	GCWGC	1 cut(s)	884
ApoI	RAATTY	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	3 cut(s)	337, 864, 1087
AsuHPI	GGTGA	3 cut(s)	77, 854, 974
AvaII	GGWCC	2 cut(s)	337, 1087
BamHI	GGATCC	1 cut(s)	1004
BanII	GRGCYC	1 cut(s)	1197
BauI	CACGAG	2 cut(s)	48, 1033
BbvI	GCAGC	1 cut(s)	871
BccI	CCATC	8 cut(s)	17, 26, 90, 120, 485, 959, 1051, 1058
BceAI	ACGGC	3 cut(s)	117, 421, 744
BciT130I	CCWGG	4 cut(s)	122, 230, 515, 975
BcoDI	GTCTC	2 cut(s)	296, 719
BfmI	CTRYAG	4 cut(s)	384, 486, 600, 1099
BfoI	RGCGCY	1 cut(s)	99
BfuAI	ACCTGC	2 cut(s)	377, 1170
BisI	GCNGC	2 cut(s)	157, 885
BlsI	GCNGC	2 cut(s)	158, 886
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	4 cut(s)	122, 230, 515, 975
Bme18I	GGWCC	2 cut(s)	337, 1087
BmgT120I	GGNCC	3 cut(s)	337, 864, 1087
BmiI	GGNNCC	2 cut(s)	58, 1006
BmrFI	CCNGG	4 cut(s)	122, 230, 515, 975
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	4 cut(s)	423, 721, 778, 1018
BmuI	ACTGGG	1 cut(s)	717
BpmI	CTGGAG	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	2 cut(s)	112, 581
Bsa29I	ATCGAT	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	1177
BsaBI	GATNNNNATC	1 cut(s)	573
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	974
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 334, 346, 491, 665
Bse1I	ACTGG	2 cut(s)	712, 716
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	4 cut(s)	122, 230, 515, 975
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	974
BseGI	GGATG	3 cut(s)	712, 772, 1069
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	5 cut(s)	66, 334, 346, 491, 665
BseMII	CTCAG	2 cut(s)	862, 924
BseNI	ACTGG	2 cut(s)	712, 716
BseXI	GCAGC	1 cut(s)	871
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	2 cut(s)	454, 505
BshFI	GGCC	2 cut(s)	233, 865
BshVI	ATCGAT	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	1184
BslI	CCNNNNNNNGG	5 cut(s)	66, 334, 346, 491, 665
BsmAI	GTCTC	2 cut(s)	296, 719
BsmBI	CGTCTC	1 cut(s)	719
BsnI	GGCC	2 cut(s)	233, 865
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	1197
Bsp143I	GATC	5 cut(s)	517, 911, 1004, 1074, 1210
BspACI	CCGC	3 cut(s)	156, 454, 831
BspANI	GGCC	2 cut(s)	233, 865
BspCNI	CTCAG	2 cut(s)	861, 925
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	454, 505
BspLI	GGNNCC	2 cut(s)	58, 1006
BspMAI	CTGCAG	3 cut(s)	388, 604, 1103
BspMI	ACCTGC	2 cut(s)	377, 1170
BspPI	GGATC	5 cut(s)	525, 919, 999, 1012, 1205
BspQI	GCTCTTC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	712, 716
BssECI	CCNNGG	1 cut(s)	974
BssMI	GATC	5 cut(s)	517, 911, 1004, 1074, 1210
BssNI	GRCGYC	1 cut(s)	15
BssSI	CACGAG	2 cut(s)	48, 1033
Bst2BI	CACGAG	2 cut(s)	48, 1033
Bst2UI	CCWGG	4 cut(s)	122, 230, 515, 975
Bst4CI	ACNGT	2 cut(s)	838, 923
Bst6I	CTCTTC	5 cut(s)	122, 211, 318, 338, 455
BstACI	GRCGYC	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	1177
BstC8I	GCNNGC	6 cut(s)	416, 452, 638, 981, 1103, 1167
BstDEI	CTNAG	3 cut(s)	195, 848, 933
BstF5I	GGATG	3 cut(s)	712, 772, 1069
BstFNI	CGCG	2 cut(s)	454, 505
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	5 cut(s)	520, 914, 1007, 1077, 1213
BstMAI	GTCTC	2 cut(s)	296, 719
BstMBI	GATC	5 cut(s)	517, 911, 1004, 1074, 1210
BstMWI	GCNNNNNNNGC	3 cut(s)	881, 890, 1028
BstNI	CCWGG	4 cut(s)	122, 230, 515, 975
BstNSI	RCATGY	1 cut(s)	983
BstSCI	CCNGG	4 cut(s)	120, 228, 513, 973
BstSFI	CTRYAG	4 cut(s)	384, 486, 600, 1099
BstUI	CGCG	2 cut(s)	454, 505
BstV1I	GCAGC	1 cut(s)	871
BstX2I	RGATCY	2 cut(s)	517, 1004
BstXI	CCANNNNNNTGG	1 cut(s)	1064
BstYI	RGATCY	2 cut(s)	517, 1004
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	233, 865
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	712, 772, 1069
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	4 cut(s)	597, 723, 834, 856
BveI	ACCTGC	2 cut(s)	377, 1170
Cac8I	GCNNGC	6 cut(s)	416, 452, 638, 981, 1103, 1167
CaiI	CAGNNNCTG	2 cut(s)	191, 485
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	337, 864, 1087
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	3 cut(s)	70, 684, 1038
CviAII	CATG	7 cut(s)	215, 426, 538, 578, 980, 1013, 1084
CviQI	GTAC	3 cut(s)	70, 684, 1038
DdeI	CTNAG	3 cut(s)	195, 848, 933
DpnI	GATC	5 cut(s)	519, 913, 1006, 1076, 1212
DpnII	GATC	5 cut(s)	517, 911, 1004, 1074, 1210
Eam1104I	CTCTTC	5 cut(s)	122, 211, 318, 338, 455
EarI	CTCTTC	5 cut(s)	122, 211, 318, 338, 455
EciI	GGCGGA	1 cut(s)	820
Eco147I	AGGCCT	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	1197
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	337, 1087
Eco57I	CTGAAG	2 cut(s)	192, 378
EcoRII	CCWGG	4 cut(s)	120, 228, 513, 973
EcoT38I	GRGCYC	1 cut(s)	1197
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	7 cut(s)	218, 429, 541, 581, 983, 1016, 1087
FatI	CATG	7 cut(s)	214, 425, 537, 577, 979, 1012, 1083
FauI	CCCGC	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	157, 885
FokI	GGATG	3 cut(s)	699, 759, 1076
FriOI	GRGCYC	1 cut(s)	1197
Fsp4HI	GCNGC	2 cut(s)	157, 885
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	2 cut(s)	157, 885
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	233, 865
HapII	CCGG	1 cut(s)	1184
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	7 cut(s)	218, 429, 541, 581, 983, 1016, 1087
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	2 cut(s)	34, 403
HindII	GTYRAC	2 cut(s)	34, 403
HinfI	GANTC	4 cut(s)	188, 380, 497, 1125
HpaII	CCGG	1 cut(s)	1184
HphI	GGTGA	3 cut(s)	77, 854, 974
Hpy166II	GTNNAC	5 cut(s)	34, 403, 845, 854, 1038
Hpy188I	TCNGA	4 cut(s)	150, 1081, 1130, 1210
Hpy188III	TCNNGA	6 cut(s)	50, 91, 210, 560, 592, 724
Hpy8I	GTNNAC	5 cut(s)	34, 403, 845, 854, 1038
HpyAV	CCTTC	3 cut(s)	692, 759, 837
HpyCH4III	ACNGT	2 cut(s)	838, 923
HpyCH4IV	ACGT	2 cut(s)	405, 1176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	881, 890, 1028
HpyF3I	CTNAG	3 cut(s)	195, 848, 933
HpySE526I	ACGT	2 cut(s)	405, 1176
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	7 cut(s)	218, 429, 541, 581, 983, 1016, 1087
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	5 cut(s)	517, 911, 1004, 1074, 1210
LguI	GCTCTTC	1 cut(s)	318
Lsp1109I	GCAGC	1 cut(s)	871
LweI	GCATC	4 cut(s)	423, 721, 778, 1018
MaeII	ACGT	2 cut(s)	405, 1176
MaeIII	GTNAC	2 cut(s)	878, 1172
MalI	GATC	5 cut(s)	519, 913, 1006, 1076, 1212
MboI	GATC	5 cut(s)	517, 911, 1004, 1074, 1210
MboII	GAAGA	6 cut(s)	36, 109, 198, 305, 355, 472
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	2 cut(s)	517, 1004
MhlI	GDGCHC	1 cut(s)	1197
MmeI	TCCRAC	2 cut(s)	341, 889
MseI	TTAA	2 cut(s)	750, 1109
MslI	CAYNNNNRTG	2 cut(s)	999, 1062
MspI	CCGG	1 cut(s)	1184
MspR9I	CCNGG	4 cut(s)	122, 230, 515, 975
MunI	CAATTG	1 cut(s)	888
MvaI	CCWGG	4 cut(s)	122, 230, 515, 975
MvnI	CGCG	2 cut(s)	454, 505
MwoI	GCNNNNNNNGC	3 cut(s)	881, 890, 1028
NdeII	GATC	5 cut(s)	517, 911, 1004, 1074, 1210
NlaIII	CATG	7 cut(s)	218, 429, 541, 581, 983, 1016, 1087
NlaIV	GGNNCC	2 cut(s)	58, 1006
NspI	RCATGY	1 cut(s)	983
PaeI	GCATGC	1 cut(s)	983
PaqCI	CACCTGC	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	318
PfeI	GAWTC	4 cut(s)	188, 380, 497, 1125
PflMI	CCANNNNNTGG	2 cut(s)	334, 665
PfoI	TCCNGGA	2 cut(s)	120, 513
PkrI	GCNGC	2 cut(s)	158, 886
Ppu21I	YACGTR	1 cut(s)	1177
PsiI	TTATAA	1 cut(s)	548
Psp6I	CCWGG	4 cut(s)	120, 228, 513, 973
PspGI	CCWGG	4 cut(s)	120, 228, 513, 973
PspN4I	GGNNCC	2 cut(s)	58, 1006
PspPI	GGNCC	3 cut(s)	337, 864, 1087
PstI	CTGCAG	3 cut(s)	388, 604, 1103
PstNI	CAGNNNCTG	2 cut(s)	191, 485
PsuI	RGATCY	2 cut(s)	517, 1004
RsaI	GTAC	3 cut(s)	71, 685, 1039
RsaNI	GTAC	3 cut(s)	70, 684, 1038
RseI	CAYNNNNRTG	2 cut(s)	999, 1062
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	750, 1109
SatI	GCNGC	2 cut(s)	157, 885
Sau3AI	GATC	5 cut(s)	517, 911, 1004, 1074, 1210
Sau96I	GGNCC	3 cut(s)	337, 864, 1087
ScaI	AGTACT	1 cut(s)	685
ScrFI	CCNGG	4 cut(s)	122, 230, 515, 975
SduI	GDGCHC	1 cut(s)	1197
SfaNI	GCATC	4 cut(s)	423, 721, 778, 1018
SfcI	CTRYAG	4 cut(s)	384, 486, 600, 1099
SinI	GGWCC	2 cut(s)	337, 1087
SmiMI	CAYNNNNRTG	2 cut(s)	999, 1062
SmlI	CTYRAG	2 cut(s)	91, 560
SmoI	CTYRAG	2 cut(s)	91, 560
SphI	GCATGC	1 cut(s)	983
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	3 cut(s)	156, 454, 831
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	4 cut(s)	120, 228, 513, 973
TaaI	ACNGT	2 cut(s)	838, 923
TaiI	ACGT	2 cut(s)	408, 1179
TaqI	TCGA	2 cut(s)	21, 723
TatI	WGTACW	2 cut(s)	683, 1037
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	4 cut(s)	188, 380, 497, 1125
Tru1I	TTAA	2 cut(s)	750, 1109
Tru9I	TTAA	2 cut(s)	750, 1109
TscAI	CASTG	4 cut(s)	604, 723, 841, 856
TseI	GCWGC	1 cut(s)	884
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	4 cut(s)	604, 723, 841, 856
Van91I	CCANNNNNTGG	2 cut(s)	334, 665
VpaK11BI	GGWCC	2 cut(s)	337, 1087
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	1 cut(s)	983
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.