Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004931

Physical Location & Seq

Genomic Coordinates Reverse (-)

6178851 .. 6181912

Gene Structure 3062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGATTATATGGACTTTGTGCAGAGTCATGTTGACAGAAATGCCGATATTACAATTTCGTGTGCAGTAGTGGGTGACAGTCGTGCGTCTGATTACGGATTGGTGAAGATAGACAGCAGAGGTAAAATCATCCAGTTTGCTGAAAAACCAAGGGGAGCTGATCTAAAAGCTATGCAAGCAGATACCACGCTTCTGGGATTGTTACCACAAGATGCCAGGAAAAGCCCCTATGTTGCATCAATGGGAGTTTATGTATTTAAGACAGAAGTTTTGCTAAATCTTCTGAGGTGGAGGTATCCGACATCCAATGACTTTGGATCTGAAATCATTCCTGCGGCAGTGAGAGACCACAATGTCCAGGCATATATGTTCAGAGACTACTGGGAGGACATTGGAACTATAAAGTCTTTCTATGATGCTAACTTGGCCCTTACCGAAGAGATTCCGAAATTTGAGTTTTATGATCCAAAGACACCAATCTTCACCTCTCCTGGATTCTTACCACCAACAAAGATTGATAACTGCCGGATTGCAGATGCAATAATCTCACATGGATGTTTCTTGCAAGATTGTAGTGTCCAGCATTCAATTGTGGGTGAACGTTCACGATTGAATTATGGTGTCGAAATCAAGGATTCCATAATGATGGGTGCCGACTATTACCAAACTGAATCTGAAATCGCATCGCTGCTTGCAGACGGGAAGGTCCCAATTGGTATTGGAAGCAATACAAAGATTTGGAATTGTATAATTGATAAGAATGCGAGTATAGGGAAGGACGTAATGATCGTGAACAAAGATGGTGTTCAAGAAGCAGATAGGCCAGAAGATGGATTTTACATTCGCGAGGGAATCACAATTATTCTGGAGAAGGCAACAATACAAGACGGCATGGTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008878 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0010170 GO:0016051 GO:0016740 GO:0016772 GO:0016779 GO:0019252 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0061695 GO:0070566 GO:0071704 GO:1901576 GO:1902494 GO:1902503 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

301

Amino Acids

33.49

Weight (kDa)

4.84

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	1 - 146	2.1e-32	Nucleotidyl transferase
LbH_GLGC	PF25247	166 - 299	4e-51	GLGC left-handed parallel beta-helix domain
Hexapep_GlmU	PF24894	174 - 236	6.7e-06	GlmU-like, C-terminal hexapeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT4G39210 AT4G39210
fragaria_vesca	FvH4_2g09250 FvH4_2g09250 FvH4_2g09250 FvH4_2g09250
malus_domestica	MD05G1063400.v1.1 MD10G1072000.v1.1
prunus_persica	Prupe.8G093400_v2.0.a1 Prupe.8G093900_v2.0.a1
pyrus_communis	pycom05g05490 pycom10g05710
rosa_chinensis	RchiOBHm_Chr6g0265271
rosa_laevigata	RLG00000014206
rosa_multiflora	Rmu_sc0004967.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432260
rosa_rugosa	Rorug06G0016200 Rorug06G0016300
rosa_samantha	Rh6AG137800 Rh6BG136600 Rh6CG134900 Rh6DG121200
rosa_wichuraiana	Rw6G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	353, 704
AccB1I	GGYRCC	1 cut(s)	650
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccII	CGCG	1 cut(s)	846
AciI	CCGC	1 cut(s)	335
AclI	AACGTT	1 cut(s)	601
AclWI	GGATC	2 cut(s)	325, 458
AcsI	RAATTY	1 cut(s)	449
AfiI	CCNNNNNNNGG	1 cut(s)	830
AgsI	TTSAA	3 cut(s)	588, 613, 809
AjnI	CCWGG	3 cut(s)	215, 357, 490
AluBI	AGCT	2 cut(s)	158, 170
AluI	AGCT	2 cut(s)	158, 170
Alw26I	GTCTC	2 cut(s)	339, 369
AlwI	GGATC	2 cut(s)	325, 458
AoxI	GGCC	2 cut(s)	426, 821
ApeKI	GCWGC	1 cut(s)	688
ApoI	RAATTY	1 cut(s)	449
ArsI	GACNNNNNNTTYG	2 cut(s)	253, 285
Asp700I	GAANNNNTTC	2 cut(s)	327, 441
AspS9I	GGNCC	2 cut(s)	427, 706
AsuHPI	GGTGA	4 cut(s)	86, 115, 475, 608
AvaII	GGWCC	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	650
BbvI	GCAGC	1 cut(s)	675
BccI	CCATC	3 cut(s)	640, 794, 824
BciT130I	CCWGG	3 cut(s)	217, 359, 492
BciVI	GTATCC	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	339, 369
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	2 cut(s)	336, 689
BlsI	GCNGC	2 cut(s)	337, 690
Bme1390I	CCNGG	3 cut(s)	217, 359, 492
Bme18I	GGWCC	1 cut(s)	706
BmgT120I	GGNCC	2 cut(s)	427, 706
BmiI	GGNNCC	2 cut(s)	652, 708
BmrFI	CCNGG	3 cut(s)	217, 359, 492
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	5 cut(s)	202, 245, 406, 526, 692
BmuI	ACTGGG	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	887
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	830
Bse1I	ACTGG	2 cut(s)	133, 386
BseBI	CCWGG	3 cut(s)	217, 359, 492
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	3 cut(s)	129, 302, 560
BseLI	CCNNNNNNNGG	1 cut(s)	830
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	133, 386
BseXI	GCAGC	1 cut(s)	675
BsgI	GTGCAG	2 cut(s)	41, 84
Bsh1236I	CGCG	1 cut(s)	846
BshFI	GGCC	2 cut(s)	428, 823
BshNI	GGYRCC	1 cut(s)	650
BsiSI	CCGG	1 cut(s)	526
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	1 cut(s)	830
BsmAI	GTCTC	2 cut(s)	339, 369
BsmFI	GGGAC	1 cut(s)	692
BsmI	GAATGC	2 cut(s)	583, 766
BsnI	GGCC	2 cut(s)	428, 823
Bso31I	GGTCTC	1 cut(s)	339
Bsp143I	GATC	4 cut(s)	160, 317, 463, 786
Bsp68I	TCGCGA	1 cut(s)	846
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	2 cut(s)	428, 823
BspCNI	CTCAG	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	846
BspLI	GGNNCC	2 cut(s)	652, 708
BspPI	GGATC	2 cut(s)	325, 458
BspT107I	GGYRCC	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	133, 386
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	4 cut(s)	160, 317, 463, 786
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	3 cut(s)	217, 359, 492
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	177, 693
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	3 cut(s)	129, 302, 560
BstFNI	CGCG	1 cut(s)	846
BstKTI	GATC	4 cut(s)	163, 320, 466, 789
BstMAI	GTCTC	2 cut(s)	339, 369
BstMBI	GATC	4 cut(s)	160, 317, 463, 786
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 425
BstNI	CCWGG	3 cut(s)	217, 359, 492
BstSCI	CCNGG	3 cut(s)	215, 357, 490
BstUI	CGCG	1 cut(s)	846
BstV1I	GCAGC	1 cut(s)	675
BstX2I	RGATCY	1 cut(s)	317
BstXI	CCANNNNNNTGG	2 cut(s)	193, 646
BstYI	RGATCY	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	428, 823
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	3 cut(s)	129, 302, 560
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
BtuMI	TCGCGA	1 cut(s)	846
Cac8I	GCNNGC	2 cut(s)	177, 693
Cfr13I	GGNCC	2 cut(s)	427, 706
CseI	GACGC	1 cut(s)	75
CviAII	CATG	3 cut(s)	29, 551, 892
CviJI	RGCY	5 cut(s)	158, 170, 225, 428, 823
CviKI_1	RGCY	5 cut(s)	158, 170, 225, 428, 823
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	4 cut(s)	162, 319, 465, 788
DpnII	GATC	4 cut(s)	160, 317, 463, 786
DrdI	GACNNNNNNGTC	2 cut(s)	353, 704
DseDI	GACNNNNNNGTC	2 cut(s)	353, 704
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	706
EcoO109I	RGGNCCY	1 cut(s)	706
EcoRII	CCWGG	3 cut(s)	215, 357, 490
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	3 cut(s)	32, 554, 895
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	3 cut(s)	28, 550, 891
Fnu4HI	GCNGC	2 cut(s)	336, 689
FokI	GGATG	3 cut(s)	116, 289, 567
Fsp4HI	GCNGC	2 cut(s)	336, 689
GluI	GCNGC	2 cut(s)	336, 689
GsuI	CTGGAG	1 cut(s)	887
HaeIII	GGCC	2 cut(s)	428, 823
HapII	CCGG	1 cut(s)	526
HgaI	GACGC	1 cut(s)	75
Hin1II	CATG	3 cut(s)	32, 554, 895
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	6 cut(s)	25, 442, 495, 635, 671, 852
HpaII	CCGG	1 cut(s)	526
HphI	GGTGA	4 cut(s)	86, 115, 475, 608
Hpy166II	GTNNAC	4 cut(s)	34, 599, 605, 793
Hpy188I	TCNGA	7 cut(s)	91, 285, 300, 322, 374, 447, 676
Hpy188III	TCNNGA	5 cut(s)	606, 790, 809, 845, 866
Hpy8I	GTNNAC	4 cut(s)	34, 599, 605, 793
HpyAV	CCTTC	3 cut(s)	697, 769, 865
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	2 cut(s)	601, 780
HpyCH4V	TGCA	8 cut(s)	22, 65, 175, 236, 533, 539, 565, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 425
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	2 cut(s)	601, 780
Hsp92II	CATG	3 cut(s)	32, 554, 895
Kzo9I	GATC	4 cut(s)	160, 317, 463, 786
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	1 cut(s)	675
LweI	GCATC	5 cut(s)	202, 245, 406, 526, 692
MaeII	ACGT	2 cut(s)	601, 780
MaeIII	GTNAC	2 cut(s)	74, 201
MalI	GATC	4 cut(s)	162, 319, 465, 788
MboI	GATC	4 cut(s)	160, 317, 463, 786
MboII	GAAGA	5 cut(s)	118, 272, 449, 472, 839
MfeI	CAATTG	2 cut(s)	588, 711
MflI	RGATCY	1 cut(s)	317
MluCI	AATT	8 cut(s)	54, 449, 588, 613, 711, 742, 750, 858
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	6 cut(s)	113, 279, 285, 379, 496, 841
MroXI	GAANNNNTTC	2 cut(s)	327, 441
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	2 cut(s)	553, 644
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	3 cut(s)	217, 359, 492
MunI	CAATTG	2 cut(s)	588, 711
Mva1269I	GAATGC	2 cut(s)	583, 766
MvaI	CCWGG	3 cut(s)	217, 359, 492
MvnI	CGCG	1 cut(s)	846
MwoI	GCNNNNNNNGC	2 cut(s)	176, 425
NdeII	GATC	4 cut(s)	160, 317, 463, 786
NlaIII	CATG	3 cut(s)	32, 554, 895
NlaIV	GGNNCC	2 cut(s)	652, 708
NmuCI	GTSAC	1 cut(s)	74
NruI	TCGCGA	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PctI	GAATGC	2 cut(s)	583, 766
PdmI	GAANNNNTTC	2 cut(s)	327, 441
PfeI	GAWTC	5 cut(s)	442, 495, 635, 671, 852
PflMI	CCANNNNNTGG	1 cut(s)	830
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	337, 690
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	706
Psp1406I	AACGTT	1 cut(s)	601
Psp5II	RGGWCCY	1 cut(s)	706
Psp6I	CCWGG	3 cut(s)	215, 357, 490
PspGI	CCWGG	3 cut(s)	215, 357, 490
PspN4I	GGNNCC	2 cut(s)	652, 708
PspPI	GGNCC	2 cut(s)	427, 706
PspPPI	RGGWCCY	1 cut(s)	706
PsuI	RGATCY	1 cut(s)	317
RruI	TCGCGA	1 cut(s)	846
RseI	CAYNNNNRTG	2 cut(s)	553, 644
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	336, 689
Sau3AI	GATC	4 cut(s)	160, 317, 463, 786
Sau96I	GGNCC	2 cut(s)	427, 706
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	3 cut(s)	217, 359, 492
SetI	ASST	9 cut(s)	124, 160, 172, 290, 296, 488, 604, 708, 783
SfaNI	GCATC	5 cut(s)	202, 245, 406, 526, 692
SinI	GGWCC	1 cut(s)	706
SmiMI	CAYNNNNRTG	2 cut(s)	553, 644
Sse9I	AATT	8 cut(s)	54, 449, 588, 613, 711, 742, 750, 858
SsiI	CCGC	1 cut(s)	335
StyD4I	CCNGG	3 cut(s)	215, 357, 490
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	2 cut(s)	604, 783
TaqI	TCGA	1 cut(s)	624
TasI	AATT	8 cut(s)	54, 449, 588, 613, 711, 742, 750, 858
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	5 cut(s)	442, 495, 635, 671, 852
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	688
Tsp45I	GTSAC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	345
Van91I	CCANNNNNTGG	1 cut(s)	830
VpaK11BI	GGWCC	1 cut(s)	706
XapI	RAATTY	1 cut(s)	449
XmnI	GAANNNNTTC	2 cut(s)	327, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.