Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0019263

Physical Location & Seq

Genomic Coordinates Reverse (-)

7041688 .. 7042494

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGGTCGTTCAGGTTTCAAAACGCAGCCAAGGTGAAGGTATATGGAAGGAATACGCGGGTGATCCTCCACCCCACGTCGGTCGTTCGCCACATTTTAATAGCAGCCCTTGGTATCCACTTCTTTCAACAATTGTCAGGTACATACTCTGTGGTTTTGTACAGCCCCAGGATCTTCCAGAAGGCGGGAATCACTTCTTACAATGACAAGCTACTTGCAACCGTGGCTGTTGGATTTGTCAAGACCACTGCAATCTTGGTGGCAACATTTCAAGTTGATCGGTTCGGACGTCGTATTTTGCTTTTAAGCAGTGTGGGTGGAATGGTAGTTTCTTTTACGCTGTTCGGTGTGGGTCTTACGGTCGTTGGTCAATCCCCAAGCAAGGTTCTGTGGGCCGTCGGGTTGTGCATCGCCATGGTACTATTCATCGTTGCTTTTTTCTCCATCGGGTTTGGACCCATCACGTGGGTCTACAACTCTGAGATCTTTCCGTTGCAGTTGCACGCGCAAGGGTGCAGTATGGGGGTGACTGTAAACAGGGTGACGAACGGGGTCATCTCCATGACTTTTATTTCATTGTATAAGGTCATCACGATCGGTGGGGCATTCTTTCTTTACGCGGGAATTGCTGCGCTTAGTTGGGTCTTATTTTATACGTTGTATCCAGAAACACAGGGTCGATCCCTTGAAGATACGGAGGCCTTGTTTGGTAAATACCACAAGTGGAGAGAAGCCAATGCCATGCTTAACAAGACTGAGCAAGCTGATCATGGTTTTGGTGACGACAACAAGGCTCAAATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

269

Amino Acids

29.6

Weight (kDa)

9.81

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	29 - 236	9.5e-44	Sugar (and other) transporter
MFS_1	PF07690	40 - 230	7.3e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019263)

Species	Orthologous Gene IDs
malus_domestica	MD10G1079000.v1.1 MD10G1079300.v1.1 MD10G1106200.v1.1
pyrus_communis	pycom04g19060 pycom10g06230
rosa_samantha	Rh6AG125200 Rh6BG121200 Rh6CG119500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	292
AccB7I	CCANNNNNTGG	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	471
AccII	CGCG	3 cut(s)	58, 506, 620
AciI	CCGC	3 cut(s)	58, 185, 620
AclWI	GGATC	3 cut(s)	58, 179, 675
AcvI	CACGTG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	289
AfaI	GTAC	3 cut(s)	142, 161, 420
AfiI	CCNNNNNNNGG	4 cut(s)	79, 184, 382, 465
AgsI	TTSAA	4 cut(s)	20, 128, 272, 689
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	2 cut(s)	211, 764
AluI	AGCT	2 cut(s)	211, 764
AlwI	GGATC	3 cut(s)	58, 179, 675
AoxI	GGCC	2 cut(s)	393, 699
ApeKI	GCWGC	3 cut(s)	26, 104, 629
Asp700I	GAANNNNTTC	1 cut(s)	193
AspLEI	GCGC	2 cut(s)	508, 634
AspS9I	GGNCC	2 cut(s)	393, 455
AsuHPI	GGTGA	5 cut(s)	46, 73, 538, 553, 791
AvaII	GGWCC	1 cut(s)	455
BbrPI	CACGTG	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	38, 116, 616
BccI	CCATC	2 cut(s)	452, 467
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	169
BciVI	GTATCC	2 cut(s)	125, 672
BclI	TGATCA	1 cut(s)	766
BfuI	GTATCC	2 cut(s)	125, 672
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	3 cut(s)	27, 105, 630
BlsI	GCNGC	3 cut(s)	28, 106, 631
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	393, 455
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	289
BsaJI	CCNNGG	5 cut(s)	30, 109, 167, 222, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 184, 382, 465
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	5 cut(s)	30, 109, 167, 222, 414
BseLI	CCNNNNNNNGG	4 cut(s)	79, 184, 382, 465
BseMII	CTCAG	2 cut(s)	471, 747
BseXI	GCAGC	3 cut(s)	38, 116, 616
BsgI	GTGCAG	1 cut(s)	535
Bsh1236I	CGCG	3 cut(s)	58, 506, 620
Bsh1285I	CGRYCG	3 cut(s)	84, 363, 597
BshFI	GGCC	2 cut(s)	395, 701
BsiEI	CGRYCG	3 cut(s)	84, 363, 597
BslI	CCNNNNNNNGG	4 cut(s)	79, 184, 382, 465
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	2 cut(s)	395, 701
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	7 cut(s)	63, 171, 277, 483, 594, 680, 766
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	3 cut(s)	58, 185, 620
BspANI	GGCC	2 cut(s)	395, 701
BspCNI	CTCAG	2 cut(s)	472, 748
BspFNI	CGCG	3 cut(s)	58, 506, 620
BspLI	GGNNCC	1 cut(s)	457
BspPI	GGATC	3 cut(s)	58, 179, 675
BsrGI	TGTACA	1 cut(s)	159
BssECI	CCNNGG	5 cut(s)	30, 109, 167, 222, 414
BssMI	GATC	7 cut(s)	63, 171, 277, 483, 594, 680, 766
BssNI	GRCGYC	1 cut(s)	289
BssT1I	CCWWGG	3 cut(s)	30, 109, 414
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	3 cut(s)	223, 361, 532
BstACI	GRCGYC	1 cut(s)	289
BstAUI	TGTACA	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	504, 762
BstDEI	CTNAG	3 cut(s)	480, 635, 756
BstDSI	CCRYGG	2 cut(s)	222, 414
BstFNI	CGCG	3 cut(s)	58, 506, 620
BstHHI	GCGC	2 cut(s)	508, 634
BstKTI	GATC	7 cut(s)	66, 174, 280, 486, 597, 683, 769
BstMBI	GATC	7 cut(s)	63, 171, 277, 483, 594, 680, 766
BstMCI	CGRYCG	3 cut(s)	84, 363, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 626
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstUI	CGCG	3 cut(s)	58, 506, 620
BstV1I	GCAGC	3 cut(s)	38, 116, 616
BstX2I	RGATCY	2 cut(s)	171, 483
BstYI	RGATCY	2 cut(s)	171, 483
BsuI	GTATCC	2 cut(s)	125, 672
BsuRI	GGCC	2 cut(s)	395, 701
BtgI	CCRYGG	2 cut(s)	222, 414
BtgZI	GCGATG	1 cut(s)	394
BtrI	CACGTC	1 cut(s)	78
BtsI	GCAGTG	2 cut(s)	246, 316
BtsIMutI	CAGTG	2 cut(s)	246, 316
Cac8I	GCNNGC	2 cut(s)	504, 762
CfoI	GCGC	2 cut(s)	508, 634
Cfr13I	GGNCC	2 cut(s)	393, 455
Csp6I	GTAC	3 cut(s)	141, 160, 419
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	4 cut(s)	415, 562, 742, 770
CviQI	GTAC	3 cut(s)	141, 160, 419
DdeI	CTNAG	3 cut(s)	480, 635, 756
DpnI	GATC	7 cut(s)	65, 173, 279, 485, 596, 682, 768
DpnII	GATC	7 cut(s)	63, 171, 277, 483, 594, 680, 766
Eco130I	CCWWGG	3 cut(s)	30, 109, 414
Eco147I	AGGCCT	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	455
Eco72I	CACGTG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	3 cut(s)	30, 109, 414
ErhI	CCWWGG	3 cut(s)	30, 109, 414
FaeI	CATG	4 cut(s)	418, 565, 745, 773
FatI	CATG	4 cut(s)	414, 561, 741, 769
FauI	CCCGC	3 cut(s)	51, 178, 613
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	3 cut(s)	27, 105, 630
Fsp4HI	GCNGC	3 cut(s)	27, 105, 630
GlaI	GCGC	2 cut(s)	507, 633
GluI	GCNGC	3 cut(s)	27, 105, 630
HaeIII	GGCC	2 cut(s)	395, 701
HhaI	GCGC	2 cut(s)	508, 634
Hin1I	GRCGYC	1 cut(s)	289
Hin1II	CATG	4 cut(s)	418, 565, 745, 773
Hin6I	GCGC	2 cut(s)	506, 632
HinP1I	GCGC	2 cut(s)	506, 632
HinfI	GANTC	1 cut(s)	189
HphI	GGTGA	5 cut(s)	46, 73, 538, 553, 791
Hpy166II	GTNNAC	2 cut(s)	472, 535
Hpy188I	TCNGA	2 cut(s)	287, 481
Hpy188III	TCNNGA	4 cut(s)	178, 241, 592, 665
Hpy8I	GTNNAC	2 cut(s)	472, 535
Hpy99I	CGWCG	3 cut(s)	82, 294, 401
HpyAV	CCTTC	3 cut(s)	31, 42, 175
HpyCH4III	ACNGT	3 cut(s)	223, 361, 532
HpyCH4IV	ACGT	4 cut(s)	77, 289, 464, 656
HpyCH4V	TGCA	6 cut(s)	218, 251, 408, 496, 502, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 626
HpyF3I	CTNAG	3 cut(s)	480, 635, 756
HpySE526I	ACGT	4 cut(s)	77, 289, 464, 656
Hsp92I	GRCGYC	1 cut(s)	289
Hsp92II	CATG	4 cut(s)	418, 565, 745, 773
HspAI	GCGC	2 cut(s)	506, 632
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	7 cut(s)	63, 171, 277, 483, 594, 680, 766
LpnPI	CCDG	7 cut(s)	123, 154, 181, 191, 523, 659, 678
Lsp1109I	GCAGC	3 cut(s)	38, 116, 616
LweI	GCATC	1 cut(s)	417
MaeII	ACGT	4 cut(s)	77, 289, 464, 656
MaeIII	GTNAC	3 cut(s)	526, 541, 779
MalI	GATC	7 cut(s)	65, 173, 279, 485, 596, 682, 768
MboI	GATC	7 cut(s)	63, 171, 277, 483, 594, 680, 766
MboII	GAAGA	2 cut(s)	166, 701
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	2 cut(s)	171, 483
MluCI	AATT	2 cut(s)	131, 624
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	2 cut(s)	77, 691
MroXI	GAANNNNTTC	1 cut(s)	193
MseI	TTAA	3 cut(s)	98, 305, 747
MslI	CAYNNNNRTG	2 cut(s)	413, 560
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	3 cut(s)	58, 506, 620
MwoI	GCNNNNNNNGC	2 cut(s)	224, 626
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	7 cut(s)	63, 171, 277, 483, 594, 680, 766
NlaIII	CATG	4 cut(s)	418, 565, 745, 773
NlaIV	GGNNCC	1 cut(s)	457
NmuCI	GTSAC	3 cut(s)	526, 541, 779
PceI	AGGCCT	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PctI	GAATGC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	465
PkrI	GCNGC	3 cut(s)	28, 106, 631
Ple19I	CGATCG	1 cut(s)	597
PmaCI	CACGTG	1 cut(s)	465
PmlI	CACGTG	1 cut(s)	465
Ppu21I	YACGTR	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	167
PspCI	CACGTG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	2 cut(s)	393, 455
PsuI	RGATCY	2 cut(s)	171, 483
PvuI	CGATCG	1 cut(s)	597
RsaI	GTAC	3 cut(s)	142, 161, 420
RsaNI	GTAC	3 cut(s)	141, 160, 419
RseI	CAYNNNNRTG	2 cut(s)	413, 560
SaqAI	TTAA	3 cut(s)	98, 305, 747
SatI	GCNGC	3 cut(s)	27, 105, 630
Sau3AI	GATC	7 cut(s)	63, 171, 277, 483, 594, 680, 766
Sau96I	GGNCC	2 cut(s)	393, 455
ScrFI	CCNGG	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	417
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	2 cut(s)	413, 560
Sse9I	AATT	2 cut(s)	131, 624
SseBI	AGGCCT	1 cut(s)	701
SsiI	CCGC	3 cut(s)	58, 185, 620
StuI	AGGCCT	1 cut(s)	701
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	3 cut(s)	30, 109, 414
TaaI	ACNGT	3 cut(s)	223, 361, 532
TaiI	ACGT	4 cut(s)	80, 292, 467, 659
TaqI	TCGA	1 cut(s)	679
TaqII	GACCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	131, 624
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	3 cut(s)	98, 305, 747
Tru9I	TTAA	3 cut(s)	98, 305, 747
TscAI	CASTG	2 cut(s)	253, 316
TseFI	GTSAC	3 cut(s)	526, 541, 779
TseI	GCWGC	3 cut(s)	26, 104, 629
Tsp45I	GTSAC	3 cut(s)	526, 541, 779
TspDTI	ATGAA	2 cut(s)	415, 564
TspGWI	ACGGA	2 cut(s)	480, 710
TspRI	CASTG	2 cut(s)	253, 316
Van91I	CCANNNNNTGG	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	193
ZraI	GACGTC	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.