Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014892

Physical Location & Seq

Genomic Coordinates Reverse (-)

8409908 .. 8412727

Gene Structure 2820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g07200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAATCGGTCTGTGCTCACAGTTGGGCCAGCCATGGACATGCCGATCATGGACGACAGCGATCGGTACGAGCTGGTTCGGGATATTGGGTCGGGAAATTTCGGGGTTGCACGGCTTATGAGGGACAAGCAGACTGGTGAGCTTGTTGCTGTGAAATACATAGAGAGAGGTGAGAAGATAGATGAAAATGTACAAAGAGAAATTATAAACCACAGGTCATTGAGGCATCCGAACATTGTCCGGTTCAAAGAGGTAATATTAACACCCACTCATCTGGCTATTGTGATGGAATATGCATCTGGGGGAGAGCTCTTTGAGCGTATATGCAACGCTGGGCGTTTCAGTGAGGATGAGGCGCGTTTCTTCTTCCAGCAACTTATATCAGGAGTCAGTTACTGTCATGCAATGCAAGTGTGCCACCGGGACTTGAAGTTGGAGAACACATTGTTAGATGGAAGTCCAGCTCCTCGTTTAAAAATATGTGACTTTGGCTACTCAAAGTCCTCGGTGCTGCATTCGCAACCAAAATCGACTGTGGGCACCCCTGCATATATTGCACCTGAGGTGTTACTCAAGAAAGAATATGATGGAAAGATTGCAGATGTATGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCATTTGAACGATCCTGGGGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

226

Amino Acids

25.37

Weight (kDa)

6.31

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33950 AT4G33950
fragaria_vesca	FvH4_2g06910 FvH4_2g06910
malus_domestica	MD10G1089100.v1.1
prunus_persica	Prupe.8G115900_v2.0.a1 Prupe.8G115900_v2.0.a1 Prupe.8G115900_v2.0.a1
pyrus_communis	pycom10g07200
rosa_chinensis	RchiOBHm_Chr6g0259231
rosa_laevigata	RLG00000014547
rosa_rugosa	Rorug05G0586300
rosa_samantha	Rh6AG103000 Rh6BG095300 Rh6DG086200
rosa_wichuraiana	Rw6G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	539
AccII	CGCG	1 cut(s)	358
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	1 cut(s)	97
AfaI	GTAC	2 cut(s)	68, 192
AgsI	TTSAA	3 cut(s)	247, 430, 659
AjnI	CCWGG	1 cut(s)	665
AluBI	AGCT	4 cut(s)	73, 142, 310, 464
AluI	AGCT	4 cut(s)	73, 142, 310, 464
Alw21I	GWGCWC	2 cut(s)	18, 312
AlwI	GGATC	1 cut(s)	657
AlwNI	CAGNNNCTG	1 cut(s)	396
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	511
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	3 cut(s)	149, 182, 631
AxyI	CCTNAGG	1 cut(s)	561
BaeGI	GKGCMC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	312
Bbv12I	GWGCWC	2 cut(s)	18, 312
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	3 cut(s)	280, 446, 581
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	667
BcnI	CCSGG	1 cut(s)	422
BisI	GCNGC	1 cut(s)	512
BlsI	GCNGC	1 cut(s)	513
Bme1390I	CCNGG	2 cut(s)	422, 667
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	541, 673
BmrFI	CCNGG	2 cut(s)	422, 667
BmsI	GCATC	2 cut(s)	235, 305
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	33, 504, 666
BsaWI	WCCGGW	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	139
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	667
BseDI	CCNNGG	3 cut(s)	33, 504, 666
BseGI	GGATG	2 cut(s)	226, 355
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	498
BseYI	CCCAGC	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	18, 312
BsiSI	CCGG	2 cut(s)	241, 421
BslFI	GGGAC	2 cut(s)	137, 437
BsmFI	GGGAC	2 cut(s)	137, 437
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	28
Bsp1286I	GDGCHC	3 cut(s)	18, 312, 542
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	45, 61, 662
Bsp19I	CCATGG	1 cut(s)	33
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	541, 673
BspPI	GGATC	1 cut(s)	657
BspT107I	GGYRCC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	411
BsrGI	TGTACA	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	33, 504, 666
BssMI	GATC	3 cut(s)	45, 61, 662
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	3 cut(s)	22, 398, 535
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	561
BstDSI	CCRYGG	1 cut(s)	33
BstEII	GGTNACC	1 cut(s)	619
BstF5I	GGATG	2 cut(s)	226, 355
BstFNI	CGCG	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	48, 64, 665
BstMBI	GATC	3 cut(s)	45, 61, 662
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 517, 554
BstNI	CCWGG	1 cut(s)	667
BstNSI	RCATGY	1 cut(s)	43
BstPI	GGTNACC	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	420, 665
BstSLI	GKGCMC	1 cut(s)	542
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	498
BstXI	CCANNNNNNTGG	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	226, 355
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	396
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	67, 191
CviAII	CATG	5 cut(s)	34, 40, 49, 401, 634
CviQI	GTAC	2 cut(s)	67, 191
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	3 cut(s)	47, 63, 664
DpnII	GATC	3 cut(s)	45, 61, 662
DraI	TTTAAA	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	310
Eco81I	CCTNAGG	1 cut(s)	561
Eco91I	GGTNACC	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	310
EcoO65I	GGTNACC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	665
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	5 cut(s)	37, 43, 52, 404, 637
FaqI	GGGAC	2 cut(s)	137, 437
FatI	CATG	5 cut(s)	33, 39, 48, 400, 633
Fnu4HI	GCNGC	1 cut(s)	512
FokI	GGATG	2 cut(s)	213, 362
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	512
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	512
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	2 cut(s)	241, 421
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	5 cut(s)	37, 43, 52, 404, 637
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	2 cut(s)	4, 387
HpaII	CCGG	2 cut(s)	241, 421
HphI	GGTGA	3 cut(s)	149, 182, 631
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	4 cut(s)	80, 93, 384, 574
HpyCH4III	ACNGT	3 cut(s)	22, 398, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 517, 554
HpyF3I	CTNAG	1 cut(s)	561
Hsp92II	CATG	5 cut(s)	37, 43, 52, 404, 637
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	45, 61, 662
LmnI	GCTCC	2 cut(s)	469, 671
Lsp1109I	GCAGC	1 cut(s)	498
LweI	GCATC	2 cut(s)	235, 305
MaeIII	GTNAC	4 cut(s)	392, 482, 567, 619
MalI	GATC	3 cut(s)	47, 63, 664
MboI	GATC	3 cut(s)	45, 61, 662
MboII	GAAGA	3 cut(s)	187, 355, 358
MhlI	GDGCHC	3 cut(s)	18, 312, 542
MluCI	AATT	2 cut(s)	97, 201
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	9 cut(s)	114, 161, 216, 244, 340, 346, 477, 514, 556
Mph1103I	ATGCAT	1 cut(s)	298
MseI	TTAA	2 cut(s)	260, 473
MslI	CAYNNNNRTG	2 cut(s)	38, 638
MspI	CCGG	2 cut(s)	241, 421
MspR9I	CCNGG	2 cut(s)	422, 667
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	667
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	316, 517, 554
NciI	CCSGG	1 cut(s)	422
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	45, 61, 662
NlaIII	CATG	5 cut(s)	37, 43, 52, 404, 637
NlaIV	GGNNCC	2 cut(s)	541, 673
NmuCI	GTSAC	2 cut(s)	482, 619
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	1 cut(s)	43
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	513
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PsiI	TTATAA	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	665
PspEI	GGTNACC	1 cut(s)	619
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	665
PspN4I	GGNNCC	2 cut(s)	541, 673
PspPI	GGNCC	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	396
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	2 cut(s)	68, 192
RsaNI	GTAC	2 cut(s)	67, 191
RseI	CAYNNNNRTG	2 cut(s)	38, 638
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	260, 473
SatI	GCNGC	1 cut(s)	512
Sau3AI	GATC	3 cut(s)	45, 61, 662
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	422, 667
SduI	GDGCHC	3 cut(s)	18, 312, 542
SfaNI	GCATC	2 cut(s)	235, 305
SmiMI	CAYNNNNRTG	2 cut(s)	38, 638
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	2 cut(s)	97, 201
SspI	AATATT	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	420, 665
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	3 cut(s)	22, 398, 535
TaqI	TCGA	1 cut(s)	530
TasI	AATT	2 cut(s)	97, 201
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	260, 473
Tru9I	TTAA	2 cut(s)	260, 473
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	482, 619
TseI	GCWGC	1 cut(s)	511
Tsp45I	GTSAC	2 cut(s)	482, 619
TspDTI	ATGAA	2 cut(s)	17, 198
TspRI	CASTG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	43
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.