Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000235

Physical Location & Seq

Genomic Coordinates Reverse (-)

78322733 .. 78326004

Gene Structure 3272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0586300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGATAGGATGCTAGTTGGTGAGGCTCGTGTCGCAACGGAAATACAATTAGACTTATATGAGCGAAAGCTTGTGTTTTGGTGGGAAAAATATGGGACACAAACACCAGAGTTGATGAATTTTGCTACTCGGGTCCTTTCCCTTACTTGTAGTGCATCGGGGTGTGAGAGGAATTGGAGTACTTTTGAAATGATTCATACCAAAAAGAGGAATAGACTTGAGCACAAGAGATTGCATGCTTTAGTCTATGTGAAATATAATATTGCTCTAAGAGATAGGACTTTGAAAAGGAATGCTACAATGACTGATCCTATTGTAGTGGAAGAAATTGAATCTGATGATGAATGGATAACAGAGATAGAGGATCCGGTTCTTCCTGCCGATCCACATTGGCTTGAGGACAATGTGGAAGATCTAACATTGAATGATGAGGCGGTAAGAAACGTGCCAATTGGTACATATCAAAGTACCCTAATTGATAGAGAGCCTCCTCCTCGTGTGCATTCTCCTCCTCGTGAGCCTACTCCTCCCCGTGAGCCTACTCCTTCTCTTGATGAGCCTATTGTTTTATACAAAAGGAAATCTAGTGAAGGAGCATGTTCAAGTAAAAGAAAGGCTCCAAGGAAATCAATGCGTCTTGATGACATTGCGGATGATGGTATTAGAATTAATCCATTTGATGACACCAATCCTCTCTTCGAGCACCATGGTGATGATAGTGATGGTGGTTATAGTTTGGGTGAAGATAGTTTGGATGGTGATCTTCTAATTGATGACGATGATGATTTCCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

265

Amino Acids

30.45

Weight (kDa)

4.69

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimer_Tnp_hAT	PF05699	22 - 88	8.8e-13	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000235)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica	MD05G1072700.v1.1
prunus_persica	Prupe.8G113100_v2.0.a1
pyrus_communis	pycom05g06500 pycom10g06950
rosa_chinensis	RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata	RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora	Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii	Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa	Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha	Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana	Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	434, 650
AclWI	GGATC	4 cut(s)	302, 359, 372, 377
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	3 cut(s)	181, 457, 469
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	5 cut(s)	188, 286, 332, 424, 603
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AleI	CACNNNNGTG	1 cut(s)	708
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	2 cut(s)	225, 705
AlwI	GGATC	4 cut(s)	302, 359, 372, 377
Ama87I	CYCGRG	1 cut(s)	129
ApoI	RAATTY	1 cut(s)	118
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	4 cut(s)	32, 722, 752, 770
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	364
BauI	CACGAG	3 cut(s)	27, 495, 513
Bbv12I	GWGCWC	2 cut(s)	225, 705
BccI	CCATC	3 cut(s)	650, 716, 749
BfaI	CTAG	2 cut(s)	14, 585
BglII	AGATCT	1 cut(s)	412
BmcAI	AGTACT	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	3 cut(s)	134, 366, 618
BmsI	GCATC	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	239, 416
BsaBI	GATNNNNATC	1 cut(s)	759
BsaJI	CCNNGG	3 cut(s)	620, 706, 790
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	759
BseDI	CCNNGG	3 cut(s)	620, 706, 790
BseGI	GGATG	3 cut(s)	15, 658, 760
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	645
BseRI	GAGGAG	5 cut(s)	480, 483, 498, 501, 516
BsiHKAI	GWGCWC	2 cut(s)	225, 705
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	2 cut(s)	298, 502
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	225, 705
Bsp143I	GATC	5 cut(s)	307, 364, 382, 412, 760
Bsp19I	CCATGG	1 cut(s)	706
BspACI	CCGC	2 cut(s)	434, 650
BspLI	GGNNCC	3 cut(s)	134, 366, 618
BspPI	GGATC	4 cut(s)	302, 359, 372, 377
BsrDI	GCAATG	1 cut(s)	645
BssECI	CCNNGG	3 cut(s)	620, 706, 790
BssMI	GATC	5 cut(s)	307, 364, 382, 412, 760
BssSI	CACGAG	3 cut(s)	27, 495, 513
BssT1I	CCWWGG	3 cut(s)	620, 706, 790
Bst2BI	CACGAG	3 cut(s)	27, 495, 513
Bst6I	CTCTTC	1 cut(s)	701
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	706
BstF5I	GGATG	3 cut(s)	15, 658, 760
BstKTI	GATC	5 cut(s)	310, 367, 385, 415, 763
BstMBI	GATC	5 cut(s)	307, 364, 382, 412, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	2 cut(s)	239, 600
BstX2I	RGATCY	2 cut(s)	364, 412
BstYI	RGATCY	2 cut(s)	364, 412
BtgI	CCRYGG	1 cut(s)	706
BtsCI	GGATG	3 cut(s)	15, 658, 760
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	133
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	3 cut(s)	180, 456, 468
CviAII	CATG	3 cut(s)	236, 597, 707
CviJI	RGCY	8 cut(s)	26, 70, 394, 487, 520, 538, 559, 617
CviKI_1	RGCY	8 cut(s)	26, 70, 394, 487, 520, 538, 559, 617
CviQI	GTAC	3 cut(s)	180, 456, 468
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	5 cut(s)	309, 366, 384, 414, 762
DpnII	GATC	5 cut(s)	307, 364, 382, 412, 760
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Eco130I	CCWWGG	3 cut(s)	620, 706, 790
Eco47I	GGWCC	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	620, 706, 790
ErhI	CCWWGG	3 cut(s)	620, 706, 790
FaeI	CATG	3 cut(s)	239, 600, 710
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	3 cut(s)	235, 596, 706
FokI	GGATG	3 cut(s)	22, 665, 767
FspBI	CTAG	2 cut(s)	14, 585
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	623
Hin1II	CATG	3 cut(s)	239, 600, 710
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	193, 332
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	4 cut(s)	32, 722, 752, 770
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	3 cut(s)	515, 551, 638
HpyAV	CCTTC	2 cut(s)	555, 584
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	3 cut(s)	155, 235, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	239, 600, 710
Kzo9I	GATC	5 cut(s)	307, 364, 382, 412, 760
LmnI	GCTCC	2 cut(s)	593, 622
LpnPI	CCDG	3 cut(s)	120, 381, 390
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	2 cut(s)	14, 585
MaeII	ACGT	1 cut(s)	444
MalI	GATC	5 cut(s)	309, 366, 384, 414, 762
MboI	GATC	5 cut(s)	307, 364, 382, 412, 760
MboII	GAAGA	6 cut(s)	335, 365, 422, 688, 755, 755
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	2 cut(s)	364, 412
MhlI	GDGCHC	2 cut(s)	225, 705
MluCI	AATT	8 cut(s)	47, 118, 172, 327, 450, 474, 666, 768
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	1 cut(s)	669
MslI	CAYNNNNRTG	3 cut(s)	160, 708, 711
MspI	CCGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	2 cut(s)	298, 502
MwoI	GCNNNNNNNGC	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	706
NdeII	GATC	5 cut(s)	307, 364, 382, 412, 760
NlaIII	CATG	3 cut(s)	239, 600, 710
NlaIV	GGNNCC	3 cut(s)	134, 366, 618
NspI	RCATGY	2 cut(s)	239, 600
OliI	CACNNNNGTG	1 cut(s)	708
PaeI	GCATGC	1 cut(s)	239
PctI	GAATGC	2 cut(s)	298, 502
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	193, 332
PpuMI	RGGWCCY	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	133
PspN4I	GGNNCC	3 cut(s)	134, 366, 618
PspPI	GGNCC	1 cut(s)	133
PspPPI	RGGWCCY	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	364, 412
RsaI	GTAC	3 cut(s)	181, 457, 469
RsaNI	GTAC	3 cut(s)	180, 456, 468
RseI	CAYNNNNRTG	3 cut(s)	160, 708, 711
SaqAI	TTAA	1 cut(s)	669
Sau3AI	GATC	5 cut(s)	307, 364, 382, 412, 760
Sau96I	GGNCC	1 cut(s)	133
ScaI	AGTACT	1 cut(s)	181
SduI	GDGCHC	2 cut(s)	225, 705
SetI	ASST	2 cut(s)	72, 447
SfaNI	GCATC	1 cut(s)	164
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	3 cut(s)	160, 708, 711
SmlI	CTYRAG	2 cut(s)	218, 395
SmoI	CTYRAG	2 cut(s)	218, 395
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	8 cut(s)	47, 118, 172, 327, 450, 474, 666, 768
SsiI	CCGC	2 cut(s)	434, 650
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	2 cut(s)	14, 585
StyI	CCWWGG	3 cut(s)	620, 706, 790
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	699
TasI	AATT	8 cut(s)	47, 118, 172, 327, 450, 474, 666, 768
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	193, 332
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TspDTI	ATGAA	3 cut(s)	131, 185, 357
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	133
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	2 cut(s)	239, 600
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	14, 585
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.