Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000235

Physical Location & Seq

Genomic Coordinates Forward (+)

15025537 .. 15028358

Gene Structure 2822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGTGAAGATATCCAGGAATGGTGTTGAGGAGAAAAAGCCTAGCTTCTTCAAGGTTATTCTACCTGGCTACAGCACTGAGCATTTGAGATTCCCACCTAGATTCCTCCGGAAGCACATTGTGAACAAACTTTCTAAAAGGGCGACATTAAAGTTGAAGCGATCCCCAGAGTGGTCATGGAAGGTTGAAGTGAGAAAATCGGGAGGAGATGTGTATTTGAAAGATGGATGGCAGGAGTTTCTGAGAGATGCCTGCTTGGGTGACAAAGAGTTTTTAGTGTTCATATACAATGGAAAAATGCGTTTCAGCATAAAGGTTTACGACAAGAATGGGTGTGAGAGAATGGATTTCCCTGACATCAACACACACCAACACACAACCTCATCTAGGAGTACTAAAAGGCCTGTTAGGAGACCAAGAAAATCGAGCACAGGCAATTCAGCTGATAAGCTCAAAGAGGTTAAAGAAGAGGAAGTAGATTGCAATAACACTACAGACAAATGCGCTTCTAAGAGTACTGAAACGCTTCGTGGTAGACCAACAAAAACTACTGAGGAGTATACCAAGAGGCGTCTTGGTAGACCAACAAAACCTACCTCTAAGAGTACTAAGAGGCCTCCTGTTAGAGCAACAAAAAAAACTACTGAGAGTACCAAGAGGCCTCCTGTTACACCAGCAAAAACTACTTTTGAGAGTACTAAGAGGCCTCGTGGTAGACCAAGAAAATATCCTGTCACGTGTAAAGACTCGGGTAAGCACATTCCAAATTCTGAATTTGATGTACTCAGAGAGGTCAAAGAAGAGGAAGAAGATTACCAAGAATCTGGTGAACTGTTCAAATCCAAATTGCAATACTTTACATGCAAAATCAACAGGCTAAGTCAAGTGTACATGCCCAAACCGTTCTATGGGGAAAATCTTTCTTCAGGAAACTATGAAGTTATTTACCTGAAAAATTCTGAGGGAACAAAATGGTACAAAGTGAAGCTTTCCCGTTACCATAACACGGTCTTCATGACTAAAGGGTGGGGTGCTTTTGCAGTTGCTAACCAAGTCAAGGTGGGCAGTCTGTGCCAATTTCAGTTCCTAAAGGAAAACAGAATTGTTGTTCACATATTGAACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

375

Amino Acids

43.62

Weight (kDa)

9.96

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	16 - 109	7.7e-15	B3 DNA binding domain
B3	PF02362	291 - 374	1.1e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000235)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica	MD05G1072700.v1.1
prunus_persica	Prupe.8G113100_v2.0.a1
pyrus_communis	pycom05g06500 pycom10g06950
rosa_chinensis	RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata	RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora	Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii	Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa	Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha	Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana	Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	4 cut(s)	535, 560, 580, 715
AccIII	TCCGGA	1 cut(s)	108
AclWI	GGATC	1 cut(s)	156
AcsI	RAATTY	3 cut(s)	766, 773, 955
AcuI	CTGAAG	1 cut(s)	909
AcvI	CACGTG	1 cut(s)	738
AcyI	GRCGYC	1 cut(s)	571
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	8 cut(s)	394, 517, 607, 652, 697, 783, 890, 977
AfiI	CCNNNNNNNGG	5 cut(s)	171, 387, 908, 1006, 1057
AflIII	ACRYGT	1 cut(s)	737
AgsI	TTSAA	6 cut(s)	52, 157, 188, 220, 838, 1120
AjnI	CCWGG	2 cut(s)	14, 64
AluBI	AGCT	4 cut(s)	45, 443, 451, 988
AluI	AGCT	4 cut(s)	45, 443, 451, 988
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	406
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	748
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	4 cut(s)	401, 614, 659, 704
ApoI	RAATTY	3 cut(s)	766, 773, 955
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	506
AsuHPI	GGTGA	3 cut(s)	16, 272, 839
AvaI	CYCGRG	1 cut(s)	748
BauI	CACGAG	1 cut(s)	708
BbrPI	CACGTG	1 cut(s)	738
BbsI	GAAGAC	1 cut(s)	1003
Bbv12I	GWGCWC	1 cut(s)	431
BccI	CCATC	2 cut(s)	218, 222
BciT130I	CCWGG	2 cut(s)	16, 66
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	3 cut(s)	42, 99, 387
BfmI	CTRYAG	2 cut(s)	70, 492
BmcAI	AGTACT	4 cut(s)	394, 517, 607, 697
Bme1390I	CCNGG	2 cut(s)	16, 66
BmeT110I	CYCGRG	1 cut(s)	748
BmrFI	CCNGG	2 cut(s)	16, 66
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	1003
BsaAI	YACGTR	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	571
BsaI	GGTCTC	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	5 cut(s)	171, 387, 908, 1006, 1057
BseAI	TCCGGA	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	16, 66
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	5 cut(s)	171, 387, 908, 1006, 1057
BseMII	CTCAG	6 cut(s)	69, 233, 543, 636, 799, 951
BseRI	GAGGAG	3 cut(s)	44, 219, 569
BshFI	GGCC	4 cut(s)	403, 616, 661, 706
BsiHKAI	GWGCWC	1 cut(s)	431
BsiHKCI	CYCGRG	1 cut(s)	748
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	5 cut(s)	171, 387, 908, 1006, 1057
BsmAI	GTCTC	1 cut(s)	406
BsnI	GGCC	4 cut(s)	403, 616, 661, 706
Bso31I	GGTCTC	1 cut(s)	406
BsoBI	CYCGRG	1 cut(s)	748
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp13I	TCCGGA	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	888
Bsp143I	GATC	1 cut(s)	161
BspANI	GGCC	4 cut(s)	403, 616, 661, 706
BspCNI	CTCAG	6 cut(s)	70, 234, 544, 637, 798, 952
BspEI	TCCGGA	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	1014
BspPI	GGATC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	406
BsrGI	TGTACA	1 cut(s)	888
BssMI	GATC	1 cut(s)	161
BssNAI	GTATAC	1 cut(s)	561
BssNI	GRCGYC	1 cut(s)	571
BssSI	CACGAG	1 cut(s)	708
Bst1107I	GTATAC	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	708
Bst2UI	CCWGG	2 cut(s)	16, 66
Bst4CI	ACNGT	3 cut(s)	834, 903, 1009
Bst6I	CTCTTC	2 cut(s)	462, 795
BstACI	GRCGYC	1 cut(s)	571
BstAPI	GCANNNNNTGC	1 cut(s)	1071
BstAUI	TGTACA	1 cut(s)	888
BstBAI	YACGTR	1 cut(s)	738
BstC8I	GCNNGC	1 cut(s)	253
BstENI	CCTNNNNNAGG	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	1071
BstNI	CCWGG	2 cut(s)	16, 66
BstNSI	RCATGY	2 cut(s)	864, 895
BstSCI	CCNGG	2 cut(s)	14, 64
BstSFI	CTRYAG	2 cut(s)	70, 492
BstV2I	GAAGAC	1 cut(s)	1003
BstXI	CCANNNNNNTGG	1 cut(s)	824
BstZ17I	GTATAC	1 cut(s)	561
BsuRI	GGCC	4 cut(s)	403, 616, 661, 706
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	1014
CfoI	GCGC	1 cut(s)	506
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	8 cut(s)	393, 516, 606, 651, 696, 782, 889, 976
CviAII	CATG	4 cut(s)	177, 861, 892, 1015
CviQI	GTAC	8 cut(s)	393, 516, 606, 651, 696, 782, 889, 976
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
DraIII	CACNNNGTG	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	462, 795
EarI	CTCTTC	2 cut(s)	462, 795
Eco147I	AGGCCT	4 cut(s)	403, 616, 661, 706
Eco31I	GGTCTC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	909
Eco72I	CACGTG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	748
EcoNI	CCTNNNNNAGG	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	14, 64
EcoRV	GATATC	1 cut(s)	12
FaeI	CATG	4 cut(s)	180, 864, 895, 1018
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 972, 1004
FatI	CATG	4 cut(s)	176, 860, 891, 1014
FblI	GTMKAC	4 cut(s)	535, 560, 580, 715
FokI	GGATG	1 cut(s)	240
FspBI	CTAG	3 cut(s)	42, 99, 387
GlaI	GCGC	1 cut(s)	505
HaeIII	GGCC	4 cut(s)	403, 616, 661, 706
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	1 cut(s)	506
Hin1I	GRCGYC	1 cut(s)	571
Hin1II	CATG	4 cut(s)	180, 864, 895, 1018
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	986
HinfI	GANTC	4 cut(s)	90, 102, 746, 821
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	3 cut(s)	16, 272, 839
Hpy166II	GTNNAC	9 cut(s)	124, 319, 536, 561, 581, 716, 830, 889, 1111
Hpy188I	TCNGA	4 cut(s)	243, 772, 788, 961
Hpy188III	TCNNGA	4 cut(s)	109, 201, 927, 1015
Hpy8I	GTNNAC	9 cut(s)	124, 319, 536, 561, 581, 716, 830, 889, 1111
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	3 cut(s)	834, 903, 1009
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	4 cut(s)	483, 850, 864, 1040
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1071
HpySE526I	ACGT	1 cut(s)	737
Hsp92I	GRCGYC	1 cut(s)	571
Hsp92II	CATG	4 cut(s)	180, 864, 895, 1018
HspAI	GCGC	1 cut(s)	504
Kpn2I	TCCGGA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	161
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	3 cut(s)	42, 99, 387
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	4 cut(s)	260, 667, 733, 995
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	8 cut(s)	19, 40, 479, 812, 818, 821, 915, 1003
MfeI	CAATTG	1 cut(s)	1123
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	8 cut(s)	436, 766, 773, 845, 955, 1076, 1101, 1123
MlyI	GAGTC	1 cut(s)	740
MroI	TCCGGA	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	2 cut(s)	149, 462
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	16, 66
MunI	CAATTG	1 cut(s)	1123
MvaI	CCWGG	2 cut(s)	16, 66
MwoI	GCNNNNNNNGC	1 cut(s)	1071
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	4 cut(s)	180, 864, 895, 1018
NmuCI	GTSAC	2 cut(s)	260, 733
NspI	RCATGY	2 cut(s)	864, 895
PagI	TCATGA	1 cut(s)	1014
PceI	AGGCCT	4 cut(s)	403, 616, 661, 706
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	90, 102, 821
PfoI	TCCNGGA	1 cut(s)	14
PleI	GAGTC	1 cut(s)	740
PmaCI	CACGTG	1 cut(s)	738
PmlI	CACGTG	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	740
Ppu21I	YACGTR	1 cut(s)	738
Psp6I	CCWGG	2 cut(s)	14, 64
PspCI	CACGTG	1 cut(s)	738
PspGI	CCWGG	2 cut(s)	14, 64
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	8 cut(s)	394, 517, 607, 652, 697, 783, 890, 977
RsaNI	GTAC	8 cut(s)	393, 516, 606, 651, 696, 782, 889, 976
SaqAI	TTAA	2 cut(s)	149, 462
Sau3AI	GATC	1 cut(s)	161
ScaI	AGTACT	4 cut(s)	394, 517, 607, 697
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	2 cut(s)	16, 66
SduI	GDGCHC	1 cut(s)	431
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	2 cut(s)	70, 492
Sse9I	AATT	8 cut(s)	436, 766, 773, 845, 955, 1076, 1101, 1123
SseBI	AGGCCT	4 cut(s)	403, 616, 661, 706
SspMI	CTAG	3 cut(s)	42, 99, 387
StuI	AGGCCT	4 cut(s)	403, 616, 661, 706
StyD4I	CCNGG	2 cut(s)	14, 64
TaaI	ACNGT	3 cut(s)	834, 903, 1009
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	1 cut(s)	425
TasI	AATT	8 cut(s)	436, 766, 773, 845, 955, 1076, 1101, 1123
TatI	WGTACW	6 cut(s)	392, 515, 605, 695, 781, 888
TfiI	GAWTC	3 cut(s)	90, 102, 821
Tru1I	TTAA	2 cut(s)	149, 462
Tru9I	TTAA	2 cut(s)	149, 462
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	2 cut(s)	260, 733
Tsp45I	GTSAC	2 cut(s)	260, 733
TspDTI	ATGAA	3 cut(s)	271, 951, 1003
TspRI	CASTG	1 cut(s)	82
XagI	CCTNNNNNAGG	1 cut(s)	385
XapI	RAATTY	3 cut(s)	766, 773, 955
XceI	RCATGY	2 cut(s)	864, 895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XmiI	GTMKAC	4 cut(s)	535, 560, 580, 715
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	3 cut(s)	42, 99, 387
ZrmI	AGTACT	4 cut(s)	394, 517, 607, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.