Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 93 - 169 | 1.1e-16 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 395 |
| AccI | GTMKAC | 1 cut(s) | 115 |
| AciI | CCGC | 1 cut(s) | 244 |
| AdeI | CACNNNGTG | 1 cut(s) | 280 |
| AfaI | GTAC | 2 cut(s) | 97, 270 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 211 |
| AgsI | TTSAA | 2 cut(s) | 25, 233 |
| AluBI | AGCT | 3 cut(s) | 146, 297, 466 |
| AluI | AGCT | 3 cut(s) | 146, 297, 466 |
| Alw26I | GTCTC | 1 cut(s) | 334 |
| AoxI | GGCC | 1 cut(s) | 104 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 296 |
| AspA2I | CCTAGG | 1 cut(s) | 107 |
| AsuHPI | GGTGA | 1 cut(s) | 335 |
| AsuII | TTCGAA | 1 cut(s) | 380 |
| AvrII | CCTAGG | 1 cut(s) | 107 |
| BcoDI | GTCTC | 1 cut(s) | 334 |
| BfaI | CTAG | 1 cut(s) | 108 |
| BfmI | CTRYAG | 2 cut(s) | 303, 402 |
| BfuAI | ACCTGC | 1 cut(s) | 395 |
| BlnI | CCTAGG | 1 cut(s) | 107 |
| BmcAI | AGTACT | 1 cut(s) | 97 |
| Bpu10I | CCTNAGC | 1 cut(s) | 210 |
| Bpu14I | TTCGAA | 1 cut(s) | 380 |
| BsaI | GGTCTC | 1 cut(s) | 334 |
| BsaJI | CCNNGG | 1 cut(s) | 107 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 211 |
| Bse1I | ACTGG | 1 cut(s) | 247 |
| BseDI | CCNNGG | 1 cut(s) | 107 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 211 |
| BseMII | CTCAG | 2 cut(s) | 224, 326 |
| BseNI | ACTGG | 1 cut(s) | 247 |
| BshFI | GGCC | 1 cut(s) | 106 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 211 |
| BsmAI | GTCTC | 1 cut(s) | 334 |
| BsnI | GGCC | 1 cut(s) | 106 |
| Bso31I | GGTCTC | 1 cut(s) | 334 |
| Bsp119I | TTCGAA | 1 cut(s) | 380 |
| BspACI | CCGC | 1 cut(s) | 244 |
| BspANI | GGCC | 1 cut(s) | 106 |
| BspCNI | CTCAG | 2 cut(s) | 223, 327 |
| BspMAI | CTGCAG | 1 cut(s) | 406 |
| BspMI | ACCTGC | 1 cut(s) | 395 |
| BspT104I | TTCGAA | 1 cut(s) | 380 |
| BspTNI | GGTCTC | 1 cut(s) | 334 |
| BsrI | ACTGG | 1 cut(s) | 247 |
| BssECI | CCNNGG | 1 cut(s) | 107 |
| BssT1I | CCWWGG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 1 cut(s) | 85 |
| BstBI | TTCGAA | 1 cut(s) | 380 |
| BstDEI | CTNAG | 3 cut(s) | 90, 210, 335 |
| BstMAI | GTCTC | 1 cut(s) | 334 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 143 |
| BstSFI | CTRYAG | 2 cut(s) | 303, 402 |
| BsuRI | GGCC | 1 cut(s) | 106 |
| BveI | ACCTGC | 1 cut(s) | 395 |
| Csp6I | GTAC | 2 cut(s) | 96, 269 |
| CviAII | CATG | 1 cut(s) | 446 |
| CviJI | RGCY | 7 cut(s) | 106, 137, 146, 297, 416, 428, 466 |
| CviKI_1 | RGCY | 7 cut(s) | 106, 137, 146, 297, 416, 428, 466 |
| CviQI | GTAC | 2 cut(s) | 96, 269 |
| DdeI | CTNAG | 3 cut(s) | 90, 210, 335 |
| DraIII | CACNNNGTG | 1 cut(s) | 280 |
| EciI | GGCGGA | 1 cut(s) | 233 |
| Eco130I | CCWWGG | 1 cut(s) | 107 |
| Eco147I | AGGCCT | 1 cut(s) | 106 |
| Eco31I | GGTCTC | 1 cut(s) | 334 |
| EcoT14I | CCWWGG | 1 cut(s) | 107 |
| ErhI | CCWWGG | 1 cut(s) | 107 |
| FaeI | CATG | 1 cut(s) | 449 |
| FaiI | YATR | 6 cut(s) | 57, 62, 219, 267, 447, 454 |
| FatI | CATG | 1 cut(s) | 445 |
| FblI | GTMKAC | 1 cut(s) | 115 |
| FspBI | CTAG | 1 cut(s) | 108 |
| HaeIII | GGCC | 1 cut(s) | 106 |
| Hin1II | CATG | 1 cut(s) | 449 |
| HindIII | AAGCTT | 1 cut(s) | 295 |
| HinfI | GANTC | 3 cut(s) | 6, 233, 377 |
| HphI | GGTGA | 1 cut(s) | 335 |
| Hpy166II | GTNNAC | 3 cut(s) | 116, 252, 493 |
| Hpy188I | TCNGA | 1 cut(s) | 238 |
| Hpy188III | TCNNGA | 2 cut(s) | 212, 289 |
| Hpy8I | GTNNAC | 3 cut(s) | 116, 252, 493 |
| HpyAV | CCTTC | 1 cut(s) | 406 |
| HpyCH4III | ACNGT | 1 cut(s) | 85 |
| HpyCH4IV | ACGT | 1 cut(s) | 458 |
| HpyCH4V | TGCA | 3 cut(s) | 404, 422, 456 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 143 |
| HpyF3I | CTNAG | 3 cut(s) | 90, 210, 335 |
| HpySE526I | ACGT | 1 cut(s) | 458 |
| Hsp92II | CATG | 1 cut(s) | 449 |
| LpnPI | CCDG | 6 cut(s) | 197, 219, 260, 291, 347, 390 |
| MaeI | CTAG | 1 cut(s) | 108 |
| MaeII | ACGT | 1 cut(s) | 458 |
| MboII | GAAGA | 8 cut(s) | 182, 185, 188, 191, 194, 197, 200, 309 |
| MluCI | AATT | 3 cut(s) | 139, 224, 369 |
| MmeI | TCCRAC | 1 cut(s) | 389 |
| MnlI | CCTC | 3 cut(s) | 148, 282, 319 |
| MroXI | GAANNNNTTC | 1 cut(s) | 296 |
| MspA1I | CMGCKG | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 143 |
| NlaIII | CATG | 1 cut(s) | 449 |
| NspV | TTCGAA | 1 cut(s) | 380 |
| PceI | AGGCCT | 1 cut(s) | 106 |
| PdmI | GAANNNNTTC | 1 cut(s) | 296 |
| PfeI | GAWTC | 3 cut(s) | 6, 233, 377 |
| PstI | CTGCAG | 1 cut(s) | 406 |
| PvuII | CAGCTG | 1 cut(s) | 146 |
| RsaI | GTAC | 2 cut(s) | 97, 270 |
| RsaNI | GTAC | 2 cut(s) | 96, 269 |
| ScaI | AGTACT | 1 cut(s) | 97 |
| SetI | ASST | 8 cut(s) | 148, 159, 274, 299, 330, 409, 461, 468 |
| SfcI | CTRYAG | 2 cut(s) | 303, 402 |
| SfuI | TTCGAA | 1 cut(s) | 380 |
| Sse9I | AATT | 3 cut(s) | 139, 224, 369 |
| SseBI | AGGCCT | 1 cut(s) | 106 |
| SsiI | CCGC | 1 cut(s) | 244 |
| SspMI | CTAG | 1 cut(s) | 108 |
| StuI | AGGCCT | 1 cut(s) | 106 |
| StyI | CCWWGG | 1 cut(s) | 107 |
| TaaI | ACNGT | 1 cut(s) | 85 |
| TaiI | ACGT | 1 cut(s) | 461 |
| TaqI | TCGA | 2 cut(s) | 375, 380 |
| TasI | AATT | 3 cut(s) | 139, 224, 369 |
| TatI | WGTACW | 1 cut(s) | 95 |
| TfiI | GAWTC | 3 cut(s) | 6, 233, 377 |
| XmaJI | CCTAGG | 1 cut(s) | 107 |
| XmiI | GTMKAC | 1 cut(s) | 115 |
| XmnI | GAANNNNTTC | 1 cut(s) | 296 |
| XspI | CTAG | 1 cut(s) | 108 |
| ZrmI | AGTACT | 1 cut(s) | 97 |