Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000235

Physical Location & Seq

Genomic Coordinates Forward (+)

5994561 .. 5996999

Gene Structure 2439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07231.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGTGAGGATACCGACTAATGGTATTGAGGAGAAGAATCCTAGCTTCTTCAAGATTATTCTACCTGGCCGCAACTCTGAGTATGTGAGAATTCCACGTAGATTTGTCCAAGAGCACATTGTGAACAAACTCCCTAAAATGGCGACATTGAAATTGAAGCGATCCTCGGAGTATTCAAGGAATGTAAAAGTGAAAAAATCAGGAGAAGATGTGTTTTTGAAAGATGGATGGCTTGAGTTTATGAGAGATGCCTGCTTGGGTGATAAAGAGTTTTTAGTGTTCATATACACTGGAAAAATGCATTTCAGCGTAAAGGTTTACGACAAGAATGCGTGTGAGAGAATGGTTTTCCCTGAGATCAAAACACACCAAAACACAACTTCATCTAGGAGTACTAAAAGGCCTTGTGGGAGACCAAGAAAATCTAGCATAGGCAATTCAGCTGATGTGCTCAAGGAGGTTAAAGAGGATGAAGAAGATTGCATTAAGAATACAGAAAAATCCAGTTCCAAGAGTACTGAAATGCCTACTTCTGAGAGTAGAAAAAGATCTCCTGTTCGACAAAAAGAAACAACTTCTCGGAGTACTAAGAGGCCTCGTGGTAGACCAAGAAAATACCCTGTCACATATAAAGACTCGGGTAGTTTAATCAGATACTTATATACACTATTAGAATATCCATGTAACTTGTGGCTCTTTCTGATTCTGCCATGTTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

241

Amino Acids

27.97

Weight (kDa)

9.83

Isoelectric Point (pI)

65.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	16 - 109	1.2e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica	MD05G1072700.v1.1
prunus_persica	Prupe.8G113100_v2.0.a1
pyrus_communis	pycom05g06500 pycom10g06950
rosa_chinensis	RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata	RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora	Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii	Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa	Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha	Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana	Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	604
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	3 cut(s)	394, 517, 586
AfiI	CCNNNNNNNGG	2 cut(s)	20, 139
AgsI	TTSAA	5 cut(s)	52, 151, 157, 177, 220
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	2 cut(s)	45, 443
AluI	AGCT	2 cut(s)	45, 443
Alw21I	GWGCWC	2 cut(s)	117, 453
Alw26I	GTCTC	1 cut(s)	406
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	637
AoxI	GGCC	3 cut(s)	67, 401, 593
ApoI	RAATTY	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	16, 272
AvaI	CYCGRG	1 cut(s)	637
BauI	CACGAG	1 cut(s)	597
Bbv12I	GWGCWC	2 cut(s)	117, 453
BccI	CCATC	2 cut(s)	218, 222
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	1 cut(s)	66
BciVI	GTATCC	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	3 cut(s)	42, 387, 426
BfuI	GTATCC	1 cut(s)	3
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
BmcAI	AGTACT	3 cut(s)	394, 517, 586
Bme1390I	CCNGG	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	637
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	238
BpuEI	CTTGAG	2 cut(s)	254, 437
BsaAI	YACGTR	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 139
Bse1I	ACTGG	2 cut(s)	295, 504
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	233, 475
BseLI	CCNNNNNNNGG	2 cut(s)	20, 139
BseMII	CTCAG	3 cut(s)	69, 345, 525
BseNI	ACTGG	2 cut(s)	295, 504
BseRI	GAGGAG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	69, 403, 595
BsiHKAI	GWGCWC	2 cut(s)	117, 453
BsiHKCI	CYCGRG	1 cut(s)	637
BslI	CCNNNNNNNGG	2 cut(s)	20, 139
BsmAI	GTCTC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	69, 403, 595
Bso31I	GGTCTC	1 cut(s)	406
BsoBI	CYCGRG	1 cut(s)	637
Bsp1286I	GDGCHC	2 cut(s)	117, 453
Bsp143I	GATC	3 cut(s)	161, 357, 548
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	3 cut(s)	69, 403, 595
BspCNI	CTCAG	3 cut(s)	70, 346, 526
BspPI	GGATC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	295, 504
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	161, 357, 548
BssSI	CACGAG	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	4 cut(s)	78, 354, 534, 588
BstF5I	GGATG	2 cut(s)	233, 475
BstKTI	GATC	3 cut(s)	164, 360, 551
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	3 cut(s)	161, 357, 548
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BsuI	GTATCC	1 cut(s)	3
BsuRI	GGCC	3 cut(s)	69, 403, 595
BtsCI	GGATG	2 cut(s)	233, 475
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	393, 516, 585
CviAII	CATG	2 cut(s)	681, 711
CviJI	RGCY	7 cut(s)	45, 69, 232, 403, 443, 595, 694
CviKI_1	RGCY	7 cut(s)	45, 69, 232, 403, 443, 595, 694
CviQI	GTAC	3 cut(s)	393, 516, 585
DdeI	CTNAG	4 cut(s)	78, 354, 534, 588
DpnI	GATC	3 cut(s)	163, 359, 550
DpnII	GATC	3 cut(s)	161, 357, 548
DraIII	CACNNNGTG	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	67
Eco147I	AGGCCT	2 cut(s)	403, 595
Eco31I	GGTCTC	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	637
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	303
FaeI	CATG	2 cut(s)	684, 714
FatI	CATG	2 cut(s)	680, 710
FblI	GTMKAC	1 cut(s)	604
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	2 cut(s)	240, 482
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	3 cut(s)	42, 387, 426
GluI	GCNGC	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	69, 403, 595
Hin1II	CATG	2 cut(s)	684, 714
HinfI	GANTC	3 cut(s)	37, 635, 703
HphI	GGTGA	2 cut(s)	16, 272
Hpy166II	GTNNAC	3 cut(s)	124, 319, 605
Hpy188I	TCNGA	6 cut(s)	79, 169, 535, 582, 653, 702
Hpy188III	TCNNGA	2 cut(s)	52, 201
Hpy8I	GTNNAC	3 cut(s)	124, 319, 605
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	301, 483
HpyF3I	CTNAG	4 cut(s)	78, 354, 534, 588
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	684, 714
Kzo9I	GATC	3 cut(s)	161, 357, 548
LpnPI	CCDG	9 cut(s)	51, 78, 186, 265, 276, 366, 517, 567, 633
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	3 cut(s)	42, 387, 426
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	622, 683
MalI	GATC	3 cut(s)	163, 359, 550
MboI	GATC	3 cut(s)	161, 357, 548
MboII	GAAGA	5 cut(s)	40, 46, 218, 485, 488
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	2 cut(s)	117, 453
MluCI	AATT	4 cut(s)	90, 152, 436, 717
MlyI	GAGTC	1 cut(s)	629
MnlI	CCTC	6 cut(s)	22, 175, 451, 460, 585, 606
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	4 cut(s)	462, 486, 647, 716
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	66
NdeII	GATC	3 cut(s)	161, 357, 548
NlaIII	CATG	2 cut(s)	684, 714
NmuCI	GTSAC	1 cut(s)	622
NsiI	ATGCAT	1 cut(s)	303
PceI	AGGCCT	2 cut(s)	403, 595
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	37, 703
PkrI	GCNGC	1 cut(s)	71
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
Ppu21I	YACGTR	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	3 cut(s)	394, 517, 586
RsaNI	GTAC	3 cut(s)	393, 516, 585
SaqAI	TTAA	4 cut(s)	462, 486, 647, 716
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	3 cut(s)	161, 357, 548
ScaI	AGTACT	3 cut(s)	394, 517, 586
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	117, 453
SetI	ASST	6 cut(s)	47, 67, 100, 318, 445, 462
SfaNI	GCATC	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	233, 452
SmoI	CTYRAG	2 cut(s)	233, 452
Sse9I	AATT	4 cut(s)	90, 152, 436, 717
SseBI	AGGCCT	2 cut(s)	403, 595
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	3 cut(s)	42, 387, 426
StuI	AGGCCT	2 cut(s)	403, 595
StyD4I	CCNGG	1 cut(s)	64
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	559
TasI	AATT	4 cut(s)	90, 152, 436, 717
TatI	WGTACW	3 cut(s)	392, 515, 584
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	37, 703
Tru1I	TTAA	4 cut(s)	462, 486, 647, 716
Tru9I	TTAA	4 cut(s)	462, 486, 647, 716
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	622
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	3 cut(s)	271, 372, 486
TspRI	CASTG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	687
XmiI	GTMKAC	1 cut(s)	604
XspI	CTAG	3 cut(s)	42, 387, 426
ZrmI	AGTACT	3 cut(s)	394, 517, 586
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.