Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000235

Physical Location & Seq

Genomic Coordinates Forward (+)

6026674 .. 6029440

Gene Structure 2767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07290.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTGAAGATACCTCGGAATGCTGTTGAGGAGAAAAAGCCCCCTTGCTTCTTCCAGATTATTCTACCTGGTTACAGCACTGAGCATCTGAGAATCCCACCGAGATTCATCCGGAAGCACATTGTGAACAAACCATCTAAAAGGGCCACATTGAAATTGAAGCAATCCTCACAGTTTTCAAGGAATGTTGAAGTGAGAAAATCAAGAGGAGATGTGTATTTGAAAGATGGATGGCAGGAGTTTCTGAGAGATGCCTGCTTGGGTGACAAGGAGATTTTAGTGTTCGTATACAATGGAAATTTGAGTTTCAACGTAAAGGTTTTTGACAAGAATGGGTGTGAGAGAATGGATTTCCCTAACATCAAAACACACCAAAACCCAAACTCAACTAGGAGTACTAAAAGGCCTCGTGGGAGACCAAGAAAATCTAGCATCGCCAATACAGCTGATATGCTCAAAGAAGTTAATGAAGAGGAAGTATATTACAGTAACAATACAGAAAAATCTACCTCCAATAGTACTGAAATGCCTTATGGTAGACCAACAAAAACTACCGAGGAGAATACCAAGAAGCATACCAGTAGTCCAACAAAAACTACTTCTCAGAGCAGCAAGAGGTCTCCTGTTGGACCAACAAAAAAAACTTCTGAGAGTACTAAGAGGCCTCGTGGTAGACCAAGAAAATACCCTGTCACTCTTAAGGACTCAGCAGGAAAGCACATTCTGAATTCTGGATTTGATGTACTCAAAGAGGTCAAGGAAGAGAAAGAAGACTCCCAAGAATCTGGTGTTCTGTTCAAATCAAAATTGCAATACTTTACAAGCAAAATCCTCAAGCTAAGTCAAGTGTACGTGTGCAAAGCATTTTATGTGGAAAATCTTTCACCACCAAACTATGACTTCGTTTTCCTGAAAAATTCAGAGGGAACAAAATGGTACAAACTACAAAGTGAAGCTTTCCTGTTACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

324

Amino Acids

37.18

Weight (kDa)

9.84

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	24 - 111	3.1e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica	MD05G1072700.v1.1
prunus_persica	Prupe.8G113100_v2.0.a1
pyrus_communis	pycom05g06500 pycom10g06950
rosa_chinensis	RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata	RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora	Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii	Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa	Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha	Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana	Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	288, 538, 673
AccIII	TCCGGA	1 cut(s)	111
AcsI	RAATTY	3 cut(s)	298, 727, 916
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	6 cut(s)	397, 520, 655, 744, 851, 938
AflII	CTTAAG	1 cut(s)	698
AflIII	ACRYGT	1 cut(s)	852
AgsI	TTSAA	7 cut(s)	154, 160, 180, 191, 223, 310, 799
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	3 cut(s)	446, 838, 956
AluI	AGCT	3 cut(s)	446, 838, 956
Alw26I	GTCTC	2 cut(s)	409, 624
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	3 cut(s)	144, 404, 662
ApeKI	GCWGC	1 cut(s)	609
ApoI	RAATTY	3 cut(s)	298, 727, 916
AspS9I	GGNCC	2 cut(s)	144, 629
AsuHPI	GGTGA	3 cut(s)	16, 275, 876
AvaII	GGWCC	1 cut(s)	629
BauI	CACGAG	2 cut(s)	408, 666
BbsI	GAAGAC	1 cut(s)	777
BbvI	GCAGC	1 cut(s)	621
BccI	CCATC	3 cut(s)	142, 221, 225
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	409, 624
BfaI	CTAG	2 cut(s)	390, 429
BfrI	CTTAAG	1 cut(s)	698
BisI	GCNGC	1 cut(s)	610
BlsI	GCNGC	1 cut(s)	611
BmcAI	AGTACT	3 cut(s)	397, 520, 655
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	144, 629
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	3 cut(s)	94, 241, 441
BpiI	GAAGAC	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	818
BsaAI	YACGTR	1 cut(s)	853
BsaI	GGTCTC	2 cut(s)	409, 624
BsaJI	CCNNGG	2 cut(s)	14, 555
BsaWI	WCCGGW	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	579
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	14, 555
BseGI	GGATG	2 cut(s)	108, 236
BseMII	CTCAG	6 cut(s)	72, 80, 236, 617, 639, 720
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	3 cut(s)	44, 222, 572
BseXI	GCAGC	1 cut(s)	621
BshFI	GGCC	3 cut(s)	146, 406, 664
BsiSI	CCGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	409, 624
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	3 cut(s)	146, 406, 664
Bso31I	GGTCTC	2 cut(s)	409, 624
Bsp13I	TCCGGA	1 cut(s)	111
BspANI	GGCC	3 cut(s)	146, 406, 664
BspCNI	CTCAG	6 cut(s)	73, 81, 237, 616, 640, 719
BspEI	TCCGGA	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	698
BspTNI	GGTCTC	2 cut(s)	409, 624
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	2 cut(s)	14, 555
BssNAI	GTATAC	1 cut(s)	289
BssSI	CACGAG	2 cut(s)	408, 666
Bst1107I	GTATAC	1 cut(s)	289
Bst2BI	CACGAG	2 cut(s)	408, 666
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	3 cut(s)	174, 488, 969
Bst6I	CTCTTC	2 cut(s)	465, 756
BstAFI	CTTAAG	1 cut(s)	698
BstBAI	YACGTR	1 cut(s)	853
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	8 cut(s)	81, 89, 245, 603, 648, 657, 706, 839
BstF5I	GGATG	2 cut(s)	108, 236
BstMAI	GTCTC	2 cut(s)	409, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	621
BstV2I	GAAGAC	1 cut(s)	777
BstXI	CCANNNNNNTGG	1 cut(s)	785
BstZ17I	GTATAC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	146, 406, 664
BtgZI	GCGATG	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	108, 236
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	144, 629
CsiI	ACCWGGT	1 cut(s)	67
Csp6I	GTAC	6 cut(s)	396, 519, 654, 743, 850, 937
CviJI	RGCY	7 cut(s)	40, 146, 406, 446, 664, 838, 956
CviKI_1	RGCY	7 cut(s)	40, 146, 406, 446, 664, 838, 956
CviQI	GTAC	6 cut(s)	396, 519, 654, 743, 850, 937
DdeI	CTNAG	8 cut(s)	81, 89, 245, 603, 648, 657, 706, 839
DraIII	CACNNNGTG	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	465, 756
EarI	CTCTTC	2 cut(s)	465, 756
Eco147I	AGGCCT	2 cut(s)	406, 664
Eco31I	GGTCTC	2 cut(s)	409, 624
Eco47I	GGWCC	1 cut(s)	629
EcoRI	GAATTC	1 cut(s)	727
EcoRII	CCWGG	1 cut(s)	67
FaiI	YATR	7 cut(s)	289, 452, 481, 534, 576, 870, 897
FalI	AAGNNNNNCTT	2 cut(s)	940, 972
FblI	GTMKAC	3 cut(s)	288, 538, 673
Fnu4HI	GCNGC	1 cut(s)	610
FokI	GGATG	2 cut(s)	95, 243
Fsp4HI	GCNGC	1 cut(s)	610
FspBI	CTAG	2 cut(s)	390, 429
GluI	GCNGC	1 cut(s)	610
HaeIII	GGCC	3 cut(s)	146, 406, 664
HapII	CCGG	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	954
HinfI	GANTC	5 cut(s)	93, 105, 704, 773, 782
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	3 cut(s)	16, 275, 876
Hpy166II	GTNNAC	5 cut(s)	127, 289, 539, 674, 850
Hpy188I	TCNGA	7 cut(s)	18, 90, 246, 606, 649, 726, 922
Hpy188III	TCNNGA	5 cut(s)	55, 112, 204, 732, 910
Hpy8I	GTNNAC	5 cut(s)	127, 289, 539, 674, 850
HpyCH4III	ACNGT	3 cut(s)	174, 488, 969
HpyCH4IV	ACGT	2 cut(s)	312, 852
HpyCH4V	TGCA	2 cut(s)	811, 858
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	8 cut(s)	81, 89, 245, 603, 648, 657, 706, 839
HpySE526I	ACGT	2 cut(s)	312, 852
Kpn2I	TCCGGA	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	621
LweI	GCATC	3 cut(s)	94, 241, 441
MabI	ACCWGGT	1 cut(s)	67
MaeI	CTAG	2 cut(s)	390, 429
MaeII	ACGT	2 cut(s)	312, 852
MaeIII	GTNAC	5 cut(s)	71, 263, 488, 691, 963
MboII	GAAGA	5 cut(s)	19, 43, 482, 773, 782
MluCI	AATT	5 cut(s)	155, 298, 727, 806, 916
MlyI	GAGTC	2 cut(s)	698, 767
MmeI	TCCRAC	2 cut(s)	607, 611
MroI	TCCGGA	1 cut(s)	111
MseI	TTAA	2 cut(s)	465, 699
MspA1I	CMGCKG	1 cut(s)	446
MspCI	CTTAAG	1 cut(s)	698
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	443
NmuCI	GTSAC	2 cut(s)	263, 691
PceI	AGGCCT	2 cut(s)	406, 664
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	93, 105, 782
PkrI	GCNGC	1 cut(s)	611
PleI	GAGTC	2 cut(s)	698, 767
PpsI	GAGTC	2 cut(s)	698, 767
Ppu21I	YACGTR	1 cut(s)	853
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	144, 629
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	6 cut(s)	397, 520, 655, 744, 851, 938
RsaNI	GTAC	6 cut(s)	396, 519, 654, 743, 850, 937
SaqAI	TTAA	2 cut(s)	465, 699
SatI	GCNGC	1 cut(s)	610
Sau96I	GGNCC	2 cut(s)	144, 629
ScaI	AGTACT	3 cut(s)	397, 520, 655
SchI	GAGTC	2 cut(s)	698, 767
ScrFI	CCNGG	1 cut(s)	69
SexAI	ACCWGGT	1 cut(s)	67
SfaNI	GCATC	3 cut(s)	94, 241, 441
SinI	GGWCC	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	698, 833
SmoI	CTYRAG	2 cut(s)	698, 833
Sse9I	AATT	5 cut(s)	155, 298, 727, 806, 916
SseBI	AGGCCT	2 cut(s)	406, 664
SspMI	CTAG	2 cut(s)	390, 429
StuI	AGGCCT	2 cut(s)	406, 664
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	3 cut(s)	174, 488, 969
TaiI	ACGT	2 cut(s)	315, 855
TasI	AATT	5 cut(s)	155, 298, 727, 806, 916
TatI	WGTACW	4 cut(s)	395, 518, 653, 742
TfiI	GAWTC	3 cut(s)	93, 105, 782
Tru1I	TTAA	2 cut(s)	465, 699
Tru9I	TTAA	2 cut(s)	465, 699
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	2 cut(s)	263, 691
TseI	GCWGC	1 cut(s)	609
Tsp45I	GTSAC	2 cut(s)	263, 691
TspDTI	ATGAA	2 cut(s)	97, 483
TspRI	CASTG	1 cut(s)	85
Vha464I	CTTAAG	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	3 cut(s)	298, 727, 916
XmiI	GTMKAC	3 cut(s)	288, 538, 673
XspI	CTAG	2 cut(s)	390, 429
ZrmI	AGTACT	3 cut(s)	397, 520, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.