pycom10g06950

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000235
Physical Location & Seq
Reverse (-)
8120628 .. 8122706
2079 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g06950.4

Sequence Viewer

Length: 936 bp
ATGGTGAAAAACATATCCACAAATGATGAGAAGAAGCCTTCCTTCTTCCGGATTCTTGTTGCCGGTTACAACACTGAGTATTTGCATATCCCCAGAGACTTCTTGAAACATATACAGAAAGACCTGTCCGAGAGAGCATTTTTGACGCTGACCGATTCCTTGGATTGTTCATGGAGTGTCAAAGTGAGTAGAACGACAATGGGTGCTGTGCGTTTCACAGATGGCTGGCAGGAGTTCTTGAGGGATAATTCCTTGGGTCACGGCAACTTTGTAGTATTCATCTATGATGGGAGGATGAAGTTCAGCATAAGGGTATATGGCACAAACGCGTGTGAGCGAGAAGTCGGTTCTACCAAGATTGGATCAACTAATCAGAATTCCACCTTTGCTGACACTACTAAAATGCCTAGTGGTAGTGGTGGACAAAGAAAGTGCGATGGGAGCTCGTCTAAGCGTCCTCATCCATCGAGCTCTTGCAGCAACGATGATTCAGGTGAAAACCTTTGTGAACCCGAAGAAGATGACGAAGACAGCACATCTAACGATTGGGACGATGACGAAGACAACACATCTGATGAGGATTCGGAAGATGACACATCTGAGGAGGATATGGAAGCTGCAGCTGAGCCTGAGTCTTTCAAATCAAAATTCCCTCATTTTAAAAGCGTAATAAGAACGTCAAGTAATGTGTACGTCCCTGCCGCCTTCTCTAGGAAGCATTTTTCTAAACAACAACAATTCAAGATTTTCATGAAAAATGCAGAGGAAAAAACATGGGCTGTGAACGTTGTCCATTTGAACACATCACACTCCTTTTCTGCCGGGTGGTCTCGGTTCGCATCTTCTAACCAAATTGGTATCGGCGATACTTGCATATTTGAGCTTTTGAGCGGCAACGAGATGAAGGTTCGCATTATCCACAAGGCATCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

312

Amino Acids

34.94

Weight (kDa)

5.19

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 891
AccII CGCG 1 cut(s) 329
AccIII TCCGGA 1 cut(s) 48
AciI CCGC 2 cut(s) 702, 891
AclI AACGTT 1 cut(s) 786
AclWI GGATC 1 cut(s) 370
AcsI RAATTY 2 cut(s) 376, 647
AfaI GTAC 1 cut(s) 692
AfiI CCNNNNNNNGG 2 cut(s) 48, 711
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 4 cut(s) 106, 640, 742, 799
AluBI AGCT 5 cut(s) 444, 471, 617, 623, 883
AluI AGCT 5 cut(s) 444, 471, 617, 623, 883
Alw21I GWGCWC 2 cut(s) 446, 473
Alw26I GTCTC 2 cut(s) 90, 834
AlwI GGATC 1 cut(s) 370
Aor13HI TCCGGA 1 cut(s) 48
ApeKI GCWGC 3 cut(s) 477, 617, 620
ApoI RAATTY 2 cut(s) 376, 647
AsuC2I CCSGG 1 cut(s) 823
AsuHPI GGTGA 2 cut(s) 16, 506
BanII GRGCYC 2 cut(s) 446, 473
BbsI GAAGAC 2 cut(s) 534, 567
Bbv12I GWGCWC 2 cut(s) 446, 473
BbvI GCAGC 3 cut(s) 489, 604, 632
BccI CCATC 4 cut(s) 215, 281, 431, 472
BceAI ACGGC 1 cut(s) 277
BcnI CCSGG 1 cut(s) 823
BcoDI GTCTC 2 cut(s) 90, 834
BfaI CTAG 2 cut(s) 408, 711
BfmI CTRYAG 1 cut(s) 618
BisI GCNGC 5 cut(s) 478, 618, 621, 702, 892
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 5 cut(s) 479, 619, 622, 703, 893
Bme1390I CCNGG 1 cut(s) 823
BmrFI CCNGG 1 cut(s) 823
BmsI GCATC 1 cut(s) 848
BpiI GAAGAC 2 cut(s) 534, 567
Bpu1102I GCTNAGC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 823
BsaI GGTCTC 1 cut(s) 834
BsaJI CCNNGG 2 cut(s) 159, 252
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 711
Bse118I RCCGGY 1 cut(s) 62
BseAI TCCGGA 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 159, 252
BseGI GGATG 2 cut(s) 300, 460
BseLI CCNNNNNNNGG 2 cut(s) 48, 711
BseMII CTCAG 4 cut(s) 66, 591, 615, 621
BseRI GAGGAG 1 cut(s) 617
BseXI GCAGC 3 cut(s) 489, 604, 632
Bsh1236I CGCG 1 cut(s) 329
BsiHKAI GWGCWC 2 cut(s) 446, 473
BsiSI CCGG 3 cut(s) 49, 63, 822
BslFI GGGAC 2 cut(s) 563, 680
BslI CCNNNNNNNGG 2 cut(s) 48, 711
BsmAI GTCTC 2 cut(s) 90, 834
BsmFI GGGAC 2 cut(s) 563, 680
Bso31I GGTCTC 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 446, 473
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 1 cut(s) 362
Bsp1720I GCTNAGC 1 cut(s) 624
BspACI CCGC 2 cut(s) 702, 891
BspCNI CTCAG 4 cut(s) 67, 592, 616, 622
BspEI TCCGGA 1 cut(s) 48
BspFNI CGCG 1 cut(s) 329
BspHI TCATGA 1 cut(s) 750
BspMAI CTGCAG 1 cut(s) 622
BspPI GGATC 1 cut(s) 370
BspTNI GGTCTC 1 cut(s) 834
BsrBI CCGCTC 1 cut(s) 891
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 159, 252
BssMI GATC 1 cut(s) 362
BssT1I CCWWGG 2 cut(s) 159, 252
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 5 cut(s) 75, 450, 600, 624, 630
BstENI CCTNNNNNAGG 1 cut(s) 709
BstF5I GGATG 2 cut(s) 300, 460
BstFNI CGCG 1 cut(s) 329
BstKTI GATC 1 cut(s) 365
BstMAI GTCTC 2 cut(s) 90, 834
BstMBI GATC 1 cut(s) 362
BstMWI GCNNNNNNNGC 3 cut(s) 441, 477, 870
BstSCI CCNGG 1 cut(s) 821
BstSFI CTRYAG 1 cut(s) 618
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 3 cut(s) 489, 604, 632
BstV2I GAAGAC 2 cut(s) 534, 567
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 2 cut(s) 300, 460
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 227
CciI TCATGA 1 cut(s) 750
Cfr10I RCCGGY 1 cut(s) 62
CseI GACGC 2 cut(s) 154, 443
Csp6I GTAC 1 cut(s) 691
CviAII CATG 3 cut(s) 171, 751, 774
CviJI RGCY 9 cut(s) 37, 225, 444, 471, 617, 623, 628, 779, 883
CviKI_1 RGCY 9 cut(s) 37, 225, 444, 471, 617, 623, 628, 779, 883
CviQI GTAC 1 cut(s) 691
DdeI CTNAG 5 cut(s) 75, 450, 600, 624, 630
DpnI GATC 1 cut(s) 364
DpnII GATC 1 cut(s) 362
DraI TTTAAA 1 cut(s) 661
Ecl136II GAGCTC 2 cut(s) 444, 471
Eco130I CCWWGG 2 cut(s) 159, 252
Eco24I GRGCYC 2 cut(s) 446, 473
Eco31I GGTCTC 1 cut(s) 834
Eco53kI GAGCTC 2 cut(s) 444, 471
EcoICRI GAGCTC 2 cut(s) 444, 471
EcoNI CCTNNNNNAGG 1 cut(s) 709
EcoRI GAATTC 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 159, 252
EcoT38I GRGCYC 2 cut(s) 446, 473
ErhI CCWWGG 2 cut(s) 159, 252
FaeI CATG 3 cut(s) 174, 754, 777
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 2 cut(s) 563, 680
FatI CATG 3 cut(s) 170, 750, 773
Fnu4HI GCNGC 5 cut(s) 478, 618, 621, 702, 892
FokI GGATG 2 cut(s) 307, 447
FriOI GRGCYC 2 cut(s) 446, 473
Fsp4HI GCNGC 5 cut(s) 478, 618, 621, 702, 892
FspBI CTAG 2 cut(s) 408, 711
GluI GCNGC 5 cut(s) 478, 618, 621, 702, 892
HapII CCGG 3 cut(s) 49, 63, 822
HgaI GACGC 2 cut(s) 154, 443
Hin1II CATG 3 cut(s) 174, 754, 777
HinfI GANTC 5 cut(s) 52, 155, 488, 581, 632
HpaII CCGG 3 cut(s) 49, 63, 822
HphI GGTGA 2 cut(s) 16, 506
Hpy166II GTNNAC 4 cut(s) 422, 509, 691, 784
Hpy188I TCNGA 5 cut(s) 130, 375, 574, 586, 601
Hpy188III TCNNGA 5 cut(s) 49, 103, 238, 742, 751
Hpy8I GTNNAC 4 cut(s) 422, 509, 691, 784
HpyAV CCTTC 4 cut(s) 48, 52, 715, 898
HpyCH4IV ACGT 3 cut(s) 677, 693, 786
HpyCH4V TGCA 5 cut(s) 85, 477, 620, 761, 873
HpyF10VI GCNNNNNNNGC 3 cut(s) 441, 477, 870
HpyF3I CTNAG 5 cut(s) 75, 450, 600, 624, 630
HpySE526I ACGT 3 cut(s) 677, 693, 786
Hsp92II CATG 3 cut(s) 174, 754, 777
Kpn2I TCCGGA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 362
LmnI GCTCC 1 cut(s) 441
Lsp1109I GCAGC 3 cut(s) 489, 604, 632
LweI GCATC 1 cut(s) 848
MaeI CTAG 2 cut(s) 408, 711
MaeII ACGT 3 cut(s) 677, 693, 786
MaeIII GTNAC 2 cut(s) 65, 257
MalI GATC 1 cut(s) 364
MbiI CCGCTC 1 cut(s) 891
MboI GATC 1 cut(s) 362
MboII GAAGA 8 cut(s) 37, 43, 527, 530, 539, 572, 599, 834
MhlI GDGCHC 2 cut(s) 446, 473
MluCI AATT 5 cut(s) 247, 376, 647, 737, 852
MluI ACGCGT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 641
MnlI CCTC 8 cut(s) 234, 285, 468, 571, 595, 598, 663, 757
MroI TCCGGA 1 cut(s) 48
MseI TTAA 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 3 cut(s) 49, 63, 822
MspR9I CCNGG 1 cut(s) 823
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 3 cut(s) 441, 477, 870
NciI CCSGG 1 cut(s) 823
NdeII GATC 1 cut(s) 362
NlaIII CATG 3 cut(s) 174, 754, 777
NmuCI GTSAC 1 cut(s) 257
PagI TCATGA 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PfeI GAWTC 4 cut(s) 52, 155, 488, 581
PkrI GCNGC 5 cut(s) 479, 619, 622, 703, 893
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
Psp124BI GAGCTC 2 cut(s) 446, 473
Psp1406I AACGTT 1 cut(s) 786
PstI CTGCAG 1 cut(s) 622
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
SacI GAGCTC 2 cut(s) 446, 473
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 5 cut(s) 478, 618, 621, 702, 892
Sau3AI GATC 1 cut(s) 362
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 1 cut(s) 823
SduI GDGCHC 2 cut(s) 446, 473
SfaNI GCATC 1 cut(s) 848
SfcI CTRYAG 1 cut(s) 618
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 5 cut(s) 247, 376, 647, 737, 852
SsiI CCGC 2 cut(s) 702, 891
SspMI CTAG 2 cut(s) 408, 711
SstI GAGCTC 2 cut(s) 446, 473
StyD4I CCNGG 1 cut(s) 821
StyI CCWWGG 2 cut(s) 159, 252
TaiI ACGT 3 cut(s) 680, 696, 789
TaqI TCGA 1 cut(s) 467
TaqII GACCGA 1 cut(s) 167
TasI AATT 5 cut(s) 247, 376, 647, 737, 852
TauI GCSGC 2 cut(s) 704, 894
TfiI GAWTC 4 cut(s) 52, 155, 488, 581
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 3 cut(s) 477, 617, 620
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 6 cut(s) 159, 268, 311, 739, 767, 917
TspRI CASTG 1 cut(s) 79
XagI CCTNNNNNAGG 1 cut(s) 709
XapI RAATTY 2 cut(s) 376, 647
XspI CTAG 2 cut(s) 408, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.