Rroxscaffold_7G00207270

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000235
Physical Location & Seq
Forward (+)
57147441 .. 57149658
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207270.1

Sequence Viewer

Length: 786 bp
ATGGCGAGAACAGCATTCAACAATGGTGGTATGGAGGAAAAAAGGGGCCCTACGTTCTTCAAGATCATAAAAACCGGTTTCAACACTGAGGATTTGAGAATCCCACCCAAATTCCGGAGACACTTGTTGAATGAACTCTCCGACAGGGCAACTTTGAATTTAATGGATTCTTCAAATAGTTCATGGACTGTTGATGTGAGCCAAACAGAAGGGGAGATATATTTCAAGAATGGATGGCAGAAGTTTGTAAGAGATAACTCCTTAGGTAACTTTGAATTCTTAGTATTTAGGTATGAGAGCGATATGCAATTTAGCATTGAGATCTTTGACAGAAATGCGAGTAAGAGGATCACGTTTCCAGATGTCAGAACACACAGACGAGGTATACACACTCAAAGTTGTCAATCCAACAAACTCAAAGAGGTTAAAGAAGAGGAGGAAGATTACCAAGATAACAAAGAAGAAGAAGCTGCCACATTGCACAATTTGGAAGGCCCTGCGTTTACAAGCGTTGTTGGACAAAACTTTTATAATTTGGCAGTTCCTACAGACTTTTCTATGAAGTACTTTCCTCTGGGATACTACACCATTGTCCTGAAAAATTCAGAGGCAAGAGAATGGGAAGTAAGCGTTGTGCCTAATGGGAAGGATGCTTCCTGTAATACGGTTAAACTTTCTGCAGGATGGGCTGCTTTTAGACGTGACAACCAAATCAACTCCGGAGATACTTGCACATTTGAGCTTGTGGAAAGCAAAACAATGTTGGTTCACATTGATCCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

261

Amino Acids

30.08

Weight (kDa)

5.67

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 19 - 112 1.5e-16 B3 DNA binding domain
B3 PF02362 178 - 258 4.7e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AccI GTMKAC 1 cut(s) 385
AccIII TCCGGA 2 cut(s) 114, 719
AclWI GGATC 2 cut(s) 356, 770
AcsI RAATTY 4 cut(s) 110, 157, 275, 601
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 8 cut(s) 19, 61, 82, 130, 157, 174, 226, 275
AjiI CACGTC 1 cut(s) 701
AluBI AGCT 2 cut(s) 470, 742
AluI AGCT 2 cut(s) 470, 742
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 2 cut(s) 356, 770
Aor13HI TCCGGA 2 cut(s) 114, 719
AoxI GGCC 2 cut(s) 46, 493
ApaI GGGCCC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 470, 689
ApoI RAATTY 4 cut(s) 110, 157, 275, 601
AsiGI ACCGGT 1 cut(s) 74
AspS9I GGNCC 3 cut(s) 46, 47, 494
AxyI CCTNAGG 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 457, 676
BccI CCATC 2 cut(s) 228, 678
BciVI GTATCC 1 cut(s) 572
BcoDI GTCTC 1 cut(s) 112
BfmI CTRYAG 2 cut(s) 546, 678
BfuI GTATCC 1 cut(s) 572
BglII AGATCT 1 cut(s) 321
BisI GCNGC 2 cut(s) 471, 690
BlsI GCNGC 2 cut(s) 472, 691
BmcAI AGTACT 1 cut(s) 566
BmgBI CACGTC 1 cut(s) 701
BmgT120I GGNCC 3 cut(s) 46, 47, 494
BmiI GGNNCC 2 cut(s) 47, 48
BmsI GCATC 1 cut(s) 640
BsaWI WCCGGW 3 cut(s) 74, 114, 719
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 74
Bse21I CCTNAGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 476
BseAI TCCGGA 2 cut(s) 114, 719
BseGI GGATG 3 cut(s) 239, 655, 689
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 449
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 2 cut(s) 457, 676
BshFI GGCC 2 cut(s) 48, 495
BshTI ACCGGT 1 cut(s) 74
BsiSI CCGG 3 cut(s) 75, 115, 720
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 112
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 2 cut(s) 48, 495
Bsp120I GGGCCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 50
Bsp13I TCCGGA 2 cut(s) 114, 719
Bsp143I GATC 4 cut(s) 63, 321, 348, 775
BspANI GGCC 2 cut(s) 48, 495
BspCNI CTCAG 1 cut(s) 79
BspEI TCCGGA 2 cut(s) 114, 719
BspLI GGNNCC 2 cut(s) 47, 48
BspMAI CTGCAG 1 cut(s) 682
BspPI GGATC 2 cut(s) 356, 770
BsrDI GCAATG 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 4 cut(s) 63, 321, 348, 775
BssNAI GTATAC 1 cut(s) 386
Bst1107I GTATAC 1 cut(s) 386
Bst4CI ACNGT 2 cut(s) 190, 667
Bst6I CTCTTC 1 cut(s) 426
BstDEI CTNAG 4 cut(s) 87, 262, 280, 780
BstF5I GGATG 3 cut(s) 239, 655, 689
BstKTI GATC 4 cut(s) 66, 324, 351, 778
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 4 cut(s) 63, 321, 348, 775
BstMWI GCNNNNNNNGC 2 cut(s) 11, 686
BstSFI CTRYAG 2 cut(s) 546, 678
BstSLI GKGCMC 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 457, 676
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BstZ17I GTATAC 1 cut(s) 386
Bsu36I CCTNAGG 1 cut(s) 262
BsuI GTATCC 1 cut(s) 572
BsuRI GGCC 2 cut(s) 48, 495
BtrI CACGTC 1 cut(s) 701
BtsCI GGATG 3 cut(s) 239, 655, 689
BtsIMutI CAGTG 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 46, 47, 494
Csp6I GTAC 1 cut(s) 565
CspAI ACCGGT 1 cut(s) 74
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 183
CviJI RGCY 6 cut(s) 48, 201, 470, 495, 689, 742
CviKI_1 RGCY 6 cut(s) 48, 201, 470, 495, 689, 742
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 4 cut(s) 87, 262, 280, 780
DpnI GATC 4 cut(s) 65, 323, 350, 777
DpnII GATC 4 cut(s) 63, 321, 348, 775
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 262
EcoO109I RGGNCCY 3 cut(s) 46, 47, 494
EcoRI GAATTC 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 1 cut(s) 186
FaiI YATR 9 cut(s) 32, 68, 184, 220, 294, 305, 386, 531, 560
FatI CATG 1 cut(s) 182
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 471, 690
FokI GGATG 3 cut(s) 246, 662, 696
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 471, 690
GluI GCNGC 2 cut(s) 471, 690
HaeIII GGCC 2 cut(s) 48, 495
HapII CCGG 3 cut(s) 75, 115, 720
Hin1II CATG 1 cut(s) 186
HinfI GANTC 2 cut(s) 99, 167
HpaII CCGG 3 cut(s) 75, 115, 720
Hpy166II GTNNAC 3 cut(s) 386, 504, 769
Hpy188I TCNGA 3 cut(s) 142, 368, 607
Hpy188III TCNNGA 6 cut(s) 61, 115, 226, 359, 595, 720
Hpy8I GTNNAC 3 cut(s) 386, 504, 769
HpyAV CCTTC 3 cut(s) 203, 485, 640
HpyCH4III ACNGT 2 cut(s) 190, 667
HpyCH4IV ACGT 3 cut(s) 53, 353, 700
HpyCH4V TGCA 4 cut(s) 307, 481, 680, 732
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 686
HpyF3I CTNAG 4 cut(s) 87, 262, 280, 780
HpySE526I ACGT 3 cut(s) 53, 353, 700
Hsp92II CATG 1 cut(s) 186
Kpn2I TCCGGA 2 cut(s) 114, 719
Kzo9I GATC 4 cut(s) 63, 321, 348, 775
Lsp1109I GCAGC 2 cut(s) 457, 676
LweI GCATC 1 cut(s) 640
MaeII ACGT 3 cut(s) 53, 353, 700
MaeIII GTNAC 2 cut(s) 266, 701
MalI GATC 4 cut(s) 65, 323, 350, 777
MboI GATC 4 cut(s) 63, 321, 348, 775
MboII GAAGA 6 cut(s) 49, 162, 443, 452, 473, 476
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 7 cut(s) 110, 157, 275, 308, 484, 532, 601
MmeI TCCRAC 3 cut(s) 165, 432, 496
MnlI CCTC 9 cut(s) 28, 82, 339, 374, 415, 427, 430, 582, 601
MroI TCCGGA 2 cut(s) 114, 719
MseI TTAA 3 cut(s) 161, 426, 669
MspI CCGG 3 cut(s) 75, 115, 720
Mva1269I GAATGC 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 11, 686
NdeII GATC 4 cut(s) 63, 321, 348, 775
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 2 cut(s) 47, 48
NmuCI GTSAC 1 cut(s) 701
PctI GAATGC 1 cut(s) 14
PfeI GAWTC 2 cut(s) 99, 167
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 2 cut(s) 472, 691
PsiI TTATAA 1 cut(s) 531
PspN4I GGNNCC 2 cut(s) 47, 48
PspOMI GGGCCC 1 cut(s) 46
PspPI GGNCC 3 cut(s) 46, 47, 494
PstI CTGCAG 1 cut(s) 682
PsuI RGATCY 1 cut(s) 321
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SaqAI TTAA 3 cut(s) 161, 426, 669
SatI GCNGC 2 cut(s) 471, 690
Sau3AI GATC 4 cut(s) 63, 321, 348, 775
Sau96I GGNCC 3 cut(s) 46, 47, 494
ScaI AGTACT 1 cut(s) 566
SduI GDGCHC 1 cut(s) 50
SetI ASST 9 cut(s) 56, 268, 293, 356, 385, 426, 472, 703, 744
SfaNI GCATC 1 cut(s) 640
SfcI CTRYAG 2 cut(s) 546, 678
Sse9I AATT 7 cut(s) 110, 157, 275, 308, 484, 532, 601
TaaI ACNGT 2 cut(s) 190, 667
TaiI ACGT 3 cut(s) 56, 356, 703
TasI AATT 7 cut(s) 110, 157, 275, 308, 484, 532, 601
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 2 cut(s) 99, 167
Tru1I TTAA 3 cut(s) 161, 426, 669
Tru9I TTAA 3 cut(s) 161, 426, 669
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 2 cut(s) 470, 689
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 3 cut(s) 147, 171, 575
TspRI CASTG 1 cut(s) 91
XapI RAATTY 4 cut(s) 110, 157, 275, 601
XmiI GTMKAC 1 cut(s) 385
ZrmI AGTACT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.