Rroxscaffold_7G00207150

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000235
Physical Location & Seq
Forward (+)
57057962 .. 57062064
4103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207150.1

Sequence Viewer

Length: 1017 bp
ATGGCGAGAACAGGATTCAATAATGGTGGTATGGAGGAGCAGAAGGGTCCTACCTTCTTCAAGATAATCAAGCCCGGATTCAACACAGATCATCTGAGAATCCCACCAGCATTCAGGAAGCACATCTTGAATGAACTCTCTATAAGGGCAACTTTGACTCTGAGCAGTTCTGCAGATTCTTCATGGAATGTCAGAGTCCATAAGATAGGAAGGGATATTTATCTCAAGGAAGGCTGGCAAGAGTTTCTAAGAGATAATTCCTTAGGTGATTCAGAGTTCTTGGTGTTTGGATATGATGGAAATATGCATTTCAGCATAGATATTTTTGAGAAGGATTGTTGTAAGAGAACCAAAGCTCCTGCTTTGAGAAGGCATCAACAATCCACCTTTACTAACAATACTAAAAGACCATGTGGTAGACCAAGAAAGAGCGGTGATGCAGCTGAACACACTCTAAATGGTGAATCCAGTAACAGTACTAAAAGACCTCGTGGTAGACCAAGAAAGAGCGGTGATGCAGCTGAACACACTCTAAATGGTGAATCCAGTAACAGTGCTAAAAGACCTCGTGGTAGACCAAGAAAGAGCGGTGATGCAGCTGAACACACTCTAAATGGTGAATCCAGAAACAGTACTAAAAGACCTCGTGGTAGACCAAGAAAGAGCGGTGATGCAGCTGAACACACTCCAAATGGTGAATCCAGTATTCCCATAGAGCATACTGAATCAAGATTCCCCGCTTTTATCCGAACCATTAATAAAGTCTATGGAGTGGATTTGCCCACAGGCTTCTGTAGGAAGCATCTTCTTCCTCCTGGCTACTACAAATTCATCCTGGAAAATACAGAGGGAGACAGATGGGAAGTGAATGGTGTTCCTAGCAATAATACAATTCTGTTGTCTAGTGGATGGGTTTCTTTTGCACGGGGTAACGGAGTTGAAATAGGAGATGATTGCTTGTTTGAGCTCAAGAGCAAAAGCAAGATGGTGGTTCACATAATTAGGCAAAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

338

Amino Acids

37.92

Weight (kDa)

9.84

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 19 - 111 2.9e-15 B3 DNA binding domain
B3 PF02362 259 - 337 1.1e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 432, 510, 588, 666
AccI GTMKAC 4 cut(s) 418, 496, 574, 652
AciI CCGC 5 cut(s) 432, 510, 588, 666, 738
AcsI RAATTY 1 cut(s) 827
AfaI GTAC 2 cut(s) 478, 634
AgsI TTSAA 5 cut(s) 19, 61, 82, 130, 941
AjnI CCWGG 2 cut(s) 814, 834
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 6 cut(s) 356, 443, 521, 599, 677, 967
AluI AGCT 6 cut(s) 356, 443, 521, 599, 677, 967
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 1 cut(s) 846
ApeKI GCWGC 4 cut(s) 440, 518, 596, 674
ApoI RAATTY 1 cut(s) 827
AseI ATTAAT 1 cut(s) 756
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 9 cut(s) 278, 446, 473, 524, 551, 602, 629, 680, 707
AvaII GGWCC 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 262
BanII GRGCYC 1 cut(s) 969
BauI CACGAG 3 cut(s) 489, 567, 645
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 4 cut(s) 452, 530, 608, 686
BccI CCATC 4 cut(s) 290, 852, 903, 979
BciT130I CCWGG 2 cut(s) 816, 836
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 846
BfaI CTAG 2 cut(s) 879, 903
BfmI CTRYAG 2 cut(s) 171, 793
BisI GCNGC 4 cut(s) 441, 519, 597, 675
BlsI GCNGC 4 cut(s) 442, 520, 598, 676
BmcAI AGTACT 2 cut(s) 478, 634
Bme1390I CCNGG 3 cut(s) 75, 816, 836
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 3 cut(s) 75, 816, 836
BmsI GCATC 6 cut(s) 382, 427, 505, 583, 661, 811
BpuEI CTTGAG 2 cut(s) 209, 953
BpuMI CCSGG 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bse1I ACTGG 3 cut(s) 468, 546, 702
Bse21I CCTNAGG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 2 cut(s) 816, 836
BseGI GGATG 2 cut(s) 831, 914
BseJI GATNNNNATC 1 cut(s) 219
BseMII CTCAG 2 cut(s) 86, 152
BseNI ACTGG 3 cut(s) 468, 546, 702
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 4 cut(s) 452, 530, 608, 686
BsiHKAI GWGCWC 1 cut(s) 969
BsiSI CCGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 846
BsmI GAATGC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 969
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 5 cut(s) 432, 510, 588, 666, 738
BspCNI CTCAG 2 cut(s) 87, 153
BspLI GGNNCC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 175
BsrBI CCGCTC 4 cut(s) 432, 510, 588, 666
BsrI ACTGG 3 cut(s) 468, 546, 702
BssMI GATC 1 cut(s) 88
BssSI CACGAG 3 cut(s) 489, 567, 645
Bst2BI CACGAG 3 cut(s) 489, 567, 645
Bst2UI CCWGG 2 cut(s) 816, 836
Bst4CI ACNGT 3 cut(s) 476, 554, 632
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 4 cut(s) 95, 161, 248, 262
BstF5I GGATG 2 cut(s) 831, 914
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 846
BstMBI GATC 1 cut(s) 88
BstNI CCWGG 2 cut(s) 816, 836
BstSCI CCNGG 3 cut(s) 73, 814, 834
BstSFI CTRYAG 2 cut(s) 171, 793
BstV1I GCAGC 4 cut(s) 452, 530, 608, 686
Bsu36I CCTNAGG 1 cut(s) 262
BtsCI GGATG 2 cut(s) 831, 914
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 477, 633
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 2 cut(s) 183, 411
CviQI GTAC 2 cut(s) 477, 633
DdeI CTNAG 4 cut(s) 95, 161, 248, 262
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 967
Eco24I GRGCYC 1 cut(s) 969
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 967
Eco81I CCTNAGG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 967
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 814, 834
EcoT22I ATGCAT 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 969
FaeI CATG 2 cut(s) 186, 414
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 136, 168
FatI CATG 2 cut(s) 182, 410
FauI CCCGC 1 cut(s) 745
FblI GTMKAC 4 cut(s) 418, 496, 574, 652
Fnu4HI GCNGC 4 cut(s) 441, 519, 597, 675
FokI GGATG 2 cut(s) 818, 921
FriOI GRGCYC 1 cut(s) 969
Fsp4HI GCNGC 4 cut(s) 441, 519, 597, 675
FspBI CTAG 2 cut(s) 879, 903
GluI GCNGC 4 cut(s) 441, 519, 597, 675
HapII CCGG 1 cut(s) 75
Hin1II CATG 2 cut(s) 186, 414
HpaII CCGG 1 cut(s) 75
HphI GGTGA 9 cut(s) 278, 446, 473, 524, 551, 602, 629, 680, 707
Hpy166II GTNNAC 5 cut(s) 419, 497, 575, 653, 994
Hpy188I TCNGA 5 cut(s) 96, 162, 194, 274, 749
Hpy188III TCNNGA 6 cut(s) 61, 115, 127, 624, 729, 970
Hpy8I GTNNAC 5 cut(s) 419, 497, 575, 653, 994
HpyAV CCTTC 6 cut(s) 37, 64, 204, 224, 325, 363
HpyCH4III ACNGT 3 cut(s) 476, 554, 632
HpyCH4V TGCA 7 cut(s) 173, 307, 440, 518, 596, 674, 923
HpyF3I CTNAG 4 cut(s) 95, 161, 248, 262
Hsp92II CATG 2 cut(s) 186, 414
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 37, 361
Lsp1109I GCAGC 4 cut(s) 452, 530, 608, 686
LweI GCATC 6 cut(s) 382, 427, 505, 583, 661, 811
MaeI CTAG 2 cut(s) 879, 903
MaeIII GTNAC 3 cut(s) 470, 548, 929
MalI GATC 1 cut(s) 90
MbiI CCGCTC 4 cut(s) 432, 510, 588, 666
MboI GATC 1 cut(s) 88
MboII GAAGA 4 cut(s) 49, 171, 797, 800
MhlI GDGCHC 1 cut(s) 969
MluCI AATT 4 cut(s) 256, 827, 891, 999
MlyI GAGTC 2 cut(s) 151, 204
MnlI CCTC 6 cut(s) 28, 498, 576, 654, 822, 841
Mph1103I ATGCAT 1 cut(s) 309
MseI TTAA 1 cut(s) 756
MspA1I CMGCKG 4 cut(s) 443, 521, 599, 677
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 3 cut(s) 75, 816, 836
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 2 cut(s) 816, 836
NciI CCSGG 1 cut(s) 75
NdeII GATC 1 cut(s) 88
NlaIII CATG 2 cut(s) 186, 414
NlaIV GGNNCC 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 309
PctI GAATGC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 834
PkrI GCNGC 4 cut(s) 442, 520, 598, 676
PleI GAGTC 2 cut(s) 151, 203
PpsI GAGTC 2 cut(s) 151, 203
PpuMI RGGWCCY 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 756
Psp124BI GAGCTC 1 cut(s) 969
Psp5II RGGWCCY 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 814, 834
PspGI CCWGG 2 cut(s) 814, 834
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
PstI CTGCAG 1 cut(s) 175
PvuII CAGCTG 4 cut(s) 443, 521, 599, 677
RsaI GTAC 2 cut(s) 478, 634
RsaNI GTAC 2 cut(s) 477, 633
SacI GAGCTC 1 cut(s) 969
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 4 cut(s) 441, 519, 597, 675
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 2 cut(s) 478, 634
SchI GAGTC 2 cut(s) 151, 204
ScrFI CCNGG 3 cut(s) 75, 816, 836
SduI GDGCHC 1 cut(s) 969
SfaNI GCATC 6 cut(s) 382, 427, 505, 583, 661, 811
SfcI CTRYAG 2 cut(s) 171, 793
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 224, 968
SmoI CTYRAG 2 cut(s) 224, 968
Sse9I AATT 4 cut(s) 256, 827, 891, 999
SsiI CCGC 5 cut(s) 432, 510, 588, 666, 738
SspMI CTAG 2 cut(s) 879, 903
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 3 cut(s) 73, 814, 834
TaaI ACNGT 3 cut(s) 476, 554, 632
TasI AATT 4 cut(s) 256, 827, 891, 999
TatI WGTACW 2 cut(s) 476, 632
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 1 cut(s) 559
TseI GCWGC 4 cut(s) 440, 518, 596, 674
TspDTI ATGAA 3 cut(s) 147, 171, 820
TspGWI ACGGA 1 cut(s) 948
TspRI CASTG 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 47
VspI ATTAAT 1 cut(s) 756
XapI RAATTY 1 cut(s) 827
XmiI GTMKAC 4 cut(s) 418, 496, 574, 652
XspI CTAG 2 cut(s) 879, 903
ZrmI AGTACT 2 cut(s) 478, 634
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.