Rorug05G0586600

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000235
Physical Location & Seq
Reverse (-)
78384724 .. 78386149
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0586600.1

Sequence Viewer

Length: 972 bp
ATGTTTCGGAGCCTGCAAGCAGACGGACGTGCACAGGAAAGGAGAAGGATGCAGTCGGTGTGTGTTGGTGCTGCAGGGGCAGCAGGGGCGTGTAGGTGCTGCAGGGGCAGTGCGCAGGAAGAGCCTTGGAATGGCAGATCAGAGTGGGTTTATGTCATCAAAAGAGACCGTGATGGAAGAATCTCTTGGCATGCTCTTGATCCCACATACCAGCTCTGGCAGCCACTTCCGCCTGTTCCTGGTGAATATTCTGCAGCGCTTGGCTTTGGCTGTGCTGTCCTTAGCGGTTGCCACCTGTACTTATTTGGAGGAAAAGATCTATCGAAGGGATCTATGAGACGGCTGGTGGAGAGTGTGAAGGAATTCAAGGGACTCTCCGTACGTTCTGCTGAAATTTATGACCCTAACAAGAACCGGTGGAGCTTTATTATTTCAGATATGAGCACAGCTATGGTTCCCTTTATTGGGGTTGTTCACGATGGTATGTGGTTTCTAAAAGGACTTGGATCGCATCGTGAGGTAATGAGTGAAGCCTATTCTCCTGAAGCTAACACTTGGAACCCCATTAGTGATGGAATGGTTGCTGGTTGGCGCAACCCAAGTATTTCTTTAAATGGGCAACTCTATGCTCTGGATTGCCGTGATGGGTGCAAGGTTAGGGTTTATGATAGAGTGACAGATTCATGGAACAAATTTATTGATAGCAAGCTTCATCTGGGCAGTTCTCGTGCTTTGGAGGCTGCTGCACTTGTTCCCCTCAATGGGAAGCTTTGCATTATTCGTAATAACATGAGCATCAGTTTAGTTGATGTTTCAAGCCCGGATAAACAAGTTGAAAACAACCCTAGCCTTTGGGAAAATATTGCTGGTAAAAGTCATTTCAGAACTCTAGTCTCGAATTTATGGTCAAGTATAGCAGGCCGAACTGGTTTGAAGAGTCACATTGTACACTGTCAAGTGCTCCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

323

Amino Acids

35.82

Weight (kDa)

9.0

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 114
AciI CCGC 2 cut(s) 230, 285
AclWI GGATC 3 cut(s) 194, 337, 514
AcsI RAATTY 4 cut(s) 362, 393, 692, 898
AcuI CTGAAG 1 cut(s) 564
AfaI GTAC 3 cut(s) 299, 381, 948
AfeI AGCGCT 1 cut(s) 258
AfiI CCNNNNNNNGG 6 cut(s) 131, 239, 464, 465, 761, 762
AgeI ACCGGT 1 cut(s) 414
AgsI TTSAA 4 cut(s) 367, 816, 836, 934
AjiI CACGTC 1 cut(s) 29
AjnI CCWGG 1 cut(s) 238
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 6 cut(s) 214, 423, 449, 548, 709, 769
AluI AGCT 6 cut(s) 214, 423, 449, 548, 709, 769
Alw21I GWGCWC 3 cut(s) 34, 446, 963
Alw26I GTCTC 3 cut(s) 159, 331, 898
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 3 cut(s) 194, 337, 514
Aor51HI AGCGCT 1 cut(s) 258
AoxI GGCC 1 cut(s) 919
ApaLI GTGCAC 1 cut(s) 30
ApeKI GCWGC 7 cut(s) 71, 80, 99, 220, 254, 740, 743
ApoI RAATTY 4 cut(s) 362, 393, 692, 898
ArsI GACNNNNNNTTYG 2 cut(s) 890, 922
AsiGI ACCGGT 1 cut(s) 414
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 3 cut(s) 115, 259, 594
AsuC2I CCSGG 1 cut(s) 821
AsuHPI GGTGA 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 34
BauI CACGAG 1 cut(s) 726
Bbv12I GWGCWC 3 cut(s) 34, 446, 963
BbvI GCAGC 7 cut(s) 58, 86, 92, 232, 266, 727, 730
BccI CCATC 4 cut(s) 167, 473, 566, 638
BceAI ACGGC 2 cut(s) 356, 624
BciT130I CCWGG 1 cut(s) 240
BcnI CCSGG 1 cut(s) 821
BcoDI GTCTC 3 cut(s) 159, 331, 898
BfaI CTAG 2 cut(s) 846, 890
BfmI CTRYAG 3 cut(s) 72, 100, 252
BfoI RGCGCY 1 cut(s) 260
BglII AGATCT 1 cut(s) 316
BisI GCNGC 7 cut(s) 72, 81, 100, 221, 255, 741, 744
BlsI GCNGC 7 cut(s) 73, 82, 101, 222, 256, 742, 745
Bme1390I CCNGG 2 cut(s) 240, 821
BmgBI CACGTC 1 cut(s) 29
BmiI GGNNCC 3 cut(s) 11, 456, 560
BmrFI CCNGG 2 cut(s) 240, 821
BmsI GCATC 3 cut(s) 39, 520, 804
Bpu10I CCTNAGC 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 821
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 414
Bsc4I CCNNNNNNNGG 6 cut(s) 131, 239, 464, 465, 761, 762
Bse118I RCCGGY 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 931
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 6 cut(s) 131, 239, 464, 465, 761, 762
BseNI ACTGG 1 cut(s) 931
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 7 cut(s) 58, 86, 92, 232, 266, 727, 730
BsgI GTGCAG 1 cut(s) 729
BshFI GGCC 1 cut(s) 921
BshTI ACCGGT 1 cut(s) 414
BsiHKAI GWGCWC 3 cut(s) 34, 446, 963
BsiSI CCGG 2 cut(s) 415, 821
BsiWI CGTACG 1 cut(s) 379
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 6 cut(s) 131, 239, 464, 465, 761, 762
BsmAI GTCTC 3 cut(s) 159, 331, 898
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 1 cut(s) 921
Bso31I GGTCTC 1 cut(s) 159
Bsp1286I GDGCHC 3 cut(s) 34, 446, 963
Bsp1407I TGTACA 1 cut(s) 946
Bsp143I GATC 5 cut(s) 137, 199, 316, 329, 506
BspACI CCGC 2 cut(s) 230, 285
BspANI GGCC 1 cut(s) 921
BspLI GGNNCC 3 cut(s) 11, 456, 560
BspMAI CTGCAG 3 cut(s) 76, 104, 256
BspPI GGATC 3 cut(s) 194, 337, 514
BspQI GCTCTTC 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 414
BsrGI TGTACA 1 cut(s) 946
BsrI ACTGG 1 cut(s) 931
BssAI RCCGGY 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 5 cut(s) 137, 199, 316, 329, 506
BssSI CACGAG 1 cut(s) 726
BssT1I CCWWGG 1 cut(s) 125
Bst2BI CACGAG 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 170, 953
Bst6I CTCTTC 2 cut(s) 114, 929
BstAUI TGTACA 1 cut(s) 946
BstC8I GCNNGC 5 cut(s) 14, 18, 192, 707, 919
BstDEI CTNAG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 3 cut(s) 115, 259, 594
BstKTI GATC 5 cut(s) 140, 202, 319, 332, 509
BstMAI GTCTC 3 cut(s) 159, 331, 898
BstMBI GATC 5 cut(s) 137, 199, 316, 329, 506
BstMWI GCNNNNNNNGC 8 cut(s) 77, 80, 86, 105, 121, 220, 229, 737
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 238, 819
BstSFI CTRYAG 3 cut(s) 72, 100, 252
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 7 cut(s) 58, 86, 92, 232, 266, 727, 730
BstX2I RGATCY 2 cut(s) 316, 329
BstYI RGATCY 2 cut(s) 316, 329
BsuRI GGCC 1 cut(s) 921
BtrI CACGTC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 54
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 115, 949
Cac8I GCNNGC 5 cut(s) 14, 18, 192, 707, 919
CfoI GCGC 3 cut(s) 115, 259, 594
Cfr10I RCCGGY 1 cut(s) 414
Csp6I GTAC 3 cut(s) 298, 380, 947
CspAI ACCGGT 1 cut(s) 414
CviAII CATG 4 cut(s) 191, 684, 790, 969
CviQI GTAC 3 cut(s) 298, 380, 947
DdeI CTNAG 1 cut(s) 281
DpnI GATC 5 cut(s) 139, 201, 318, 331, 508
DpnII GATC 5 cut(s) 137, 199, 316, 329, 506
DraI TTTAAA 1 cut(s) 612
Eam1104I CTCTTC 2 cut(s) 114, 929
EarI CTCTTC 2 cut(s) 114, 929
EciI GGCGGA 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 159
Eco47III AGCGCT 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 564
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 4 cut(s) 194, 687, 793, 972
FalI AAGNNNNNCTT 4 cut(s) 169, 201, 592, 624
FaqI GGGAC 1 cut(s) 384
FatI CATG 4 cut(s) 190, 683, 789, 968
Fnu4HI GCNGC 7 cut(s) 72, 81, 100, 221, 255, 741, 744
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 7 cut(s) 72, 81, 100, 221, 255, 741, 744
FspBI CTAG 2 cut(s) 846, 890
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 3 cut(s) 114, 258, 593
GluI GCNGC 7 cut(s) 72, 81, 100, 221, 255, 741, 744
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 921
HapII CCGG 2 cut(s) 415, 821
HhaI GCGC 3 cut(s) 115, 259, 594
Hin1II CATG 4 cut(s) 194, 687, 793, 972
Hin6I GCGC 3 cut(s) 113, 257, 592
HinP1I GCGC 3 cut(s) 113, 257, 592
HindIII AAGCTT 2 cut(s) 707, 767
HinfI GANTC 4 cut(s) 180, 372, 680, 937
HpaII CCGG 2 cut(s) 415, 821
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 3 cut(s) 32, 475, 949
Hpy188I TCNGA 4 cut(s) 9, 142, 436, 884
Hpy188III TCNNGA 6 cut(s) 197, 476, 515, 542, 632, 895
Hpy8I GTNNAC 3 cut(s) 32, 475, 949
HpyAV CCTTC 3 cut(s) 39, 319, 352
HpyCH4III ACNGT 2 cut(s) 170, 953
HpyCH4IV ACGT 2 cut(s) 28, 382
HpyCH4V TGCA 9 cut(s) 16, 32, 52, 74, 102, 254, 651, 746, 774
HpyF10VI GCNNNNNNNGC 8 cut(s) 77, 80, 86, 105, 121, 220, 229, 737
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 2 cut(s) 28, 382
Hsp92II CATG 4 cut(s) 194, 687, 793, 972
HspAI GCGC 3 cut(s) 113, 257, 592
Kzo9I GATC 5 cut(s) 137, 199, 316, 329, 506
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 3 cut(s) 9, 420, 966
Lsp1109I GCAGC 7 cut(s) 58, 86, 92, 232, 266, 727, 730
LweI GCATC 3 cut(s) 39, 520, 804
MaeI CTAG 2 cut(s) 846, 890
MaeII ACGT 2 cut(s) 28, 382
MaeIII GTNAC 2 cut(s) 673, 938
MalI GATC 5 cut(s) 139, 201, 318, 331, 508
MboI GATC 5 cut(s) 137, 199, 316, 329, 506
MboII GAAGA 3 cut(s) 131, 189, 946
MflI RGATCY 2 cut(s) 316, 329
MhlI GDGCHC 3 cut(s) 34, 446, 963
MluCI AATT 4 cut(s) 362, 393, 692, 898
MlyI GAGTC 2 cut(s) 366, 946
MnlI CCTC 4 cut(s) 302, 511, 730, 767
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 1 cut(s) 611
MslI CAYNNNNRTG 1 cut(s) 449
MspI CCGG 2 cut(s) 415, 821
MspR9I CCNGG 2 cut(s) 240, 821
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 8 cut(s) 77, 80, 86, 105, 121, 220, 229, 737
NciI CCSGG 1 cut(s) 821
NdeII GATC 5 cut(s) 137, 199, 316, 329, 506
NlaIII CATG 4 cut(s) 194, 687, 793, 972
NlaIV GGNNCC 3 cut(s) 11, 456, 560
NmuCI GTSAC 2 cut(s) 673, 938
NsbI TGCGCA 1 cut(s) 114
NspI RCATGY 1 cut(s) 194
PaeI GCATGC 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 2 cut(s) 180, 680
Pfl23II CGTACG 1 cut(s) 379
PinAI ACCGGT 1 cut(s) 414
PkrI GCNGC 7 cut(s) 73, 82, 101, 222, 256, 742, 745
PleI GAGTC 2 cut(s) 366, 945
PpsI GAGTC 2 cut(s) 366, 945
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspLI CGTACG 1 cut(s) 379
PspN4I GGNNCC 3 cut(s) 11, 456, 560
PstI CTGCAG 3 cut(s) 76, 104, 256
PsuI RGATCY 2 cut(s) 316, 329
RsaI GTAC 3 cut(s) 299, 381, 948
RsaNI GTAC 3 cut(s) 298, 380, 947
RseI CAYNNNNRTG 1 cut(s) 449
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 611
SatI GCNGC 7 cut(s) 72, 81, 100, 221, 255, 741, 744
Sau3AI GATC 5 cut(s) 137, 199, 316, 329, 506
SchI GAGTC 2 cut(s) 366, 946
ScrFI CCNGG 2 cut(s) 240, 821
SduI GDGCHC 3 cut(s) 34, 446, 963
SfaNI GCATC 3 cut(s) 39, 520, 804
SfcI CTRYAG 3 cut(s) 72, 100, 252
SmiMI CAYNNNNRTG 1 cut(s) 449
SphI GCATGC 1 cut(s) 194
Sse9I AATT 4 cut(s) 362, 393, 692, 898
SsiI CCGC 2 cut(s) 230, 285
SspI AATATT 2 cut(s) 248, 862
SspMI CTAG 2 cut(s) 846, 890
StyD4I CCNGG 2 cut(s) 238, 819
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 2 cut(s) 170, 953
TaiI ACGT 2 cut(s) 31, 385
TaqI TCGA 2 cut(s) 323, 896
TasI AATT 4 cut(s) 362, 393, 692, 898
TatI WGTACW 2 cut(s) 297, 946
TfiI GAWTC 2 cut(s) 180, 680
Tru1I TTAA 1 cut(s) 611
Tru9I TTAA 1 cut(s) 611
TscAI CASTG 2 cut(s) 115, 956
TseFI GTSAC 2 cut(s) 673, 938
TseI GCWGC 7 cut(s) 71, 80, 99, 220, 254, 740, 743
Tsp45I GTSAC 2 cut(s) 673, 938
TspDTI ATGAA 2 cut(s) 672, 701
TspGWI ACGGA 2 cut(s) 39, 367
TspRI CASTG 2 cut(s) 115, 956
VneI GTGCAC 1 cut(s) 30
XapI RAATTY 4 cut(s) 362, 393, 692, 898
XceI RCATGY 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 846, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.