Rorug05G0591300

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000235
Physical Location & Seq
Forward (+)
78918611 .. 78919636
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0591300.1

Sequence Viewer

Length: 522 bp
ATGGACCCACCTCCTTCCTCTCCCAAAACACCGTCTACCTCCTACAGAGCCCCTCCACGTCATCACTGGCGCCGCCGTTGTCTGGAGGGTCAGCCATATGTGGTGGATAGCTTGGATTATGTTTTTAGGATTGATGTGTCTTCAGAAGTGATGGTGAAGATTTCGTCGAAAGTGATTGGTTTTGGTGGGAGGAAGCATTTGGTAGAGTCTTGTGGAGAGCTTTTATGTGGTCGATATAGGGTTGAAGTGAAGAGCTTGGGTGATGGAGCGTTTTTCTTGGCTATGGATTGCTGTTTCTCTGTTTCGGCCCAAGAATTGGCTGGGTGCAAAGGGAATTGCATTTACTTCTCAGATGAAAACAATGTTAATCTTGCTCTTAGAGAAGTAACTAGACCAGAGAGTTTCATGTTCTACTTAGAGGACCATAGCATTCAGAAGTTGGGATCTTCCCCAGGCGGTTCCCAGATATTTTGGCCACCTCCAATTGAGCTCGGCTCCACATGTTCATATTCTCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

173

Amino Acids

19.27

Weight (kDa)

6.08

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 29 - 121 3.5e-14 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 69
AccB7I CCANNNNNTGG 1 cut(s) 316
AccI GTMKAC 1 cut(s) 35
AciI CCGC 2 cut(s) 73, 456
AclWI GGATC 1 cut(s) 451
AcoI YGGCCR 1 cut(s) 473
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 82, 316
AflIII ACRYGT 1 cut(s) 500
AgsI TTSAA 1 cut(s) 245
AjiI CACGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 4 cut(s) 111, 220, 255, 490
AluI AGCT 4 cut(s) 111, 220, 255, 490
Alw21I GWGCWC 1 cut(s) 492
AlwI GGATC 1 cut(s) 451
AoxI GGCC 2 cut(s) 306, 473
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 3 cut(s) 4, 307, 421
AsuHPI GGTGA 2 cut(s) 166, 272
AvaII GGWCC 2 cut(s) 4, 421
BalI TGGCCA 1 cut(s) 475
BanI GGYRCC 1 cut(s) 69
BanII GRGCYC 2 cut(s) 52, 492
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 492
BccI CCATC 2 cut(s) 145, 257
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 453
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 2 cut(s) 4, 421
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 3 cut(s) 4, 307, 421
BmiI GGNNCC 4 cut(s) 6, 71, 460, 496
BmrFI CCNGG 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BpmI CTGGAG 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 451
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 316
Bse1I ACTGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 451
BseLI CCNNNNNNNGG 2 cut(s) 82, 316
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 320
BshFI GGCC 2 cut(s) 308, 475
BshNI GGYRCC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 492
BslI CCNNNNNNNGG 2 cut(s) 82, 316
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 2 cut(s) 308, 475
Bsp1286I GDGCHC 2 cut(s) 52, 492
Bsp143I GATC 1 cut(s) 443
BspACI CCGC 2 cut(s) 73, 456
BspANI GGCC 2 cut(s) 308, 475
BspCNI CTCAG 1 cut(s) 362
BspLI GGNNCC 4 cut(s) 6, 71, 460, 496
BspPI GGATC 1 cut(s) 451
BspQI GCTCTTC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 1 cut(s) 443
BssNI GRCGYC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 245
BstACI GRCGYC 1 cut(s) 70
BstDEI CTNAG 3 cut(s) 349, 377, 415
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 1 cut(s) 446
BstMBI GATC 1 cut(s) 443
BstNI CCWGG 1 cut(s) 453
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BsuRI GGCC 2 cut(s) 308, 475
BtrI CACGTC 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 64
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 3 cut(s) 4, 307, 421
CviAII CATG 2 cut(s) 406, 501
DdeI CTNAG 3 cut(s) 349, 377, 415
DinI GGCGCC 1 cut(s) 71
DpnI GATC 1 cut(s) 445
DpnII GATC 1 cut(s) 443
EaeI YGGCCR 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 490
Eco24I GRGCYC 2 cut(s) 52, 492
Eco47I GGWCC 2 cut(s) 4, 421
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 451
EcoT38I GRGCYC 2 cut(s) 52, 492
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
FaeI CATG 2 cut(s) 409, 504
FatI CATG 2 cut(s) 405, 500
FauNDI CATATG 1 cut(s) 97
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 73
FriOI GRGCYC 2 cut(s) 52, 492
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 73
GsaI CCCAGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 2 cut(s) 308, 475
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 2 cut(s) 409, 504
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 206
HphI GGTGA 2 cut(s) 166, 272
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 3 cut(s) 145, 352, 435
Hpy188III TCNNGA 2 cut(s) 83, 515
Hpy8I GTNNAC 1 cut(s) 36
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 327, 339
HpyF3I CTNAG 3 cut(s) 349, 377, 415
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 2 cut(s) 409, 504
HspAI GCGC 1 cut(s) 70
KasI GGCGCC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 443
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 2 cut(s) 266, 500
LpnPI CCDG 8 cut(s) 52, 68, 306, 408, 438, 465, 476, 500
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 385
MalI GATC 1 cut(s) 445
MboI GATC 1 cut(s) 443
MboII GAAGA 4 cut(s) 132, 169, 262, 438
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 2 cut(s) 52, 492
MlsI TGGCCA 1 cut(s) 475
MluCI AATT 3 cut(s) 314, 334, 483
MluNI TGGCCA 1 cut(s) 475
Mly113I GGCGCC 1 cut(s) 70
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 8 cut(s) 21, 28, 49, 63, 79, 183, 412, 489
Mox20I TGGCCA 1 cut(s) 475
MscI TGGCCA 1 cut(s) 475
MseI TTAA 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 475
MspR9I CCNGG 1 cut(s) 453
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 1 cut(s) 453
NarI GGCGCC 1 cut(s) 70
NdeI CATATG 1 cut(s) 97
NdeII GATC 1 cut(s) 443
NlaIII CATG 2 cut(s) 409, 504
NlaIV GGNNCC 4 cut(s) 6, 71, 460, 496
NmeAIII GCCGAG 1 cut(s) 471
NspI RCATGY 1 cut(s) 504
PciI ACATGT 1 cut(s) 500
PciSI GCTCTTC 1 cut(s) 245
PctI GAATGC 1 cut(s) 429
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 1 cut(s) 74
PleI GAGTC 1 cut(s) 214
PluTI GGCGCC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 214
PscI ACATGT 1 cut(s) 500
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 451
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 4 cut(s) 6, 71, 460, 496
PspPI GGNCC 3 cut(s) 4, 307, 421
PsuI RGATCY 1 cut(s) 443
SacI GAGCTC 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 1 cut(s) 443
Sau96I GGNCC 3 cut(s) 4, 307, 421
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 2 cut(s) 52, 492
SetI ASST 8 cut(s) 13, 41, 61, 113, 222, 257, 481, 492
SfcI CTRYAG 1 cut(s) 43
SfoI GGCGCC 1 cut(s) 71
SinI GGWCC 2 cut(s) 4, 421
Sse9I AATT 3 cut(s) 314, 334, 483
SsiI CCGC 2 cut(s) 73, 456
SspDI GGCGCC 1 cut(s) 69
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 451
TaaI ACNGT 1 cut(s) 33
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 167, 232
TasI AATT 3 cut(s) 314, 334, 483
TauI GCSGC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 369, 394, 495
TspRI CASTG 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 4, 421
XceI RCATGY 1 cut(s) 504
XcmI CCANNNNNNNNNTGG 2 cut(s) 63, 317
XmiI GTMKAC 1 cut(s) 35
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.