Rh6CG092400

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000235
Physical Location & Seq
Reverse (-)
10168482 .. 10169714
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG092400.1

Sequence Viewer

Length: 744 bp
ATGGCGAGGAGAATAGCCAAGAATGGTGGTATCAAGGAAGAGAGACCTTCTTTCTTCAAGGTCATTCTTCCTGGTTACAACACTGAACAGTTGAGGATTCCACCGCACTTCCTAGAGCATGGTAGAAATGACCAACCTGAAAGGGCAACTTTGACATGGAACATGTCTTTAGAGCGTTCGTGGACTGTCAAAGTGTGTAGAACAAAAGAATGTGTGTATTTCAAGGATGGGTGGCGGAATTTTTTAAATGATAACTCAGTGAAGGAAGGTGACTTCCTAGTGTTCACCTATGAAGGGGAGATGCATTTCAGCATACATGATTACGAAAATAATTGTTGCAAGAGAGGCGATTTTCCTACTAATAATGAACCACACGAAGAATCCGCCCCTGCTAAGAGTACTAAAAGGAATCCTGGTAGTCCAAAGAAAGATTATTCAGCTGAATCTTTCCGGTCCAAGTTTCCTCATTACACAAGATCTATCAAGAAAAAATATTGTGTGTACTCAATTCCCACAGCCTTCTATAGGAAGCATCTTTCTGCAGGCAACTATGAAGTTGCTTTCCTGAAGATTTCAGGGGGAACCAAATGGTACAAAGTGAAGCTTGTCCCTTCCCTTCAAACAGCCTTCATGTCTAAAGGGTGGTCTGTGTTTGCGCATGATAACCAAATCGTGGTTGGAGATGTTTGCGCTTTCGAGCTCGTGAAAGAGAACAAAATGGTGGTTCACATTCTCCGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

247

Amino Acids

28.72

Weight (kDa)

9.43

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 18 - 103 2.1e-17 B3 DNA binding domain
B3 PF02362 163 - 247 2.5e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 657
AccB7I CCANNNNNTGG 1 cut(s) 673
AccIII TCCGGA 1 cut(s) 735
AciI CCGC 3 cut(s) 104, 235, 384
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 3 cut(s) 400, 503, 593
AfiI CCNNNNNNNGG 3 cut(s) 294, 525, 673
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 3 cut(s) 58, 223, 620
AjnI CCWGG 2 cut(s) 70, 412
AluBI AGCT 3 cut(s) 440, 604, 700
AluI AGCT 3 cut(s) 440, 604, 700
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 1 cut(s) 37
Aor13HI TCCGGA 1 cut(s) 735
ApoI RAATTY 1 cut(s) 238
AspLEI GCGC 2 cut(s) 658, 692
AspS9I GGNCC 1 cut(s) 453
AsuHPI GGTGA 2 cut(s) 277, 281
AvaII GGWCC 1 cut(s) 453
BanII GRGCYC 1 cut(s) 702
BauI CACGAG 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 702
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 2 cut(s) 72, 414
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 2 cut(s) 113, 278
BfmI CTRYAG 2 cut(s) 523, 540
BglII AGATCT 1 cut(s) 476
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 2 cut(s) 72, 414
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 583
BmrFI CCNGG 2 cut(s) 72, 414
BmsI GCATC 2 cut(s) 291, 541
BsaI GGTCTC 1 cut(s) 37
BsaWI WCCGGW 2 cut(s) 450, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 294, 525, 673
BseAI TCCGGA 1 cut(s) 735
BseBI CCWGG 2 cut(s) 72, 414
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 3 cut(s) 294, 525, 673
BseMII CTCAG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 702
BsiSI CCGG 2 cut(s) 451, 736
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 3 cut(s) 294, 525, 673
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 593
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 702
Bsp13I TCCGGA 1 cut(s) 735
Bsp143I GATC 1 cut(s) 476
BspACI CCGC 3 cut(s) 104, 235, 384
BspCNI CTCAG 1 cut(s) 269
BspEI TCCGGA 1 cut(s) 735
BspLI GGNNCC 1 cut(s) 583
BspMAI CTGCAG 1 cut(s) 544
BspTNI GGTCTC 1 cut(s) 37
BssMI GATC 1 cut(s) 476
BssSI CACGAG 1 cut(s) 701
Bst2BI CACGAG 1 cut(s) 701
Bst2UI CCWGG 2 cut(s) 72, 414
Bst4CI ACNGT 2 cut(s) 90, 187
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 2 cut(s) 256, 393
BstENI CCTNNNNNAGG 1 cut(s) 523
BstF5I GGATG 1 cut(s) 232
BstHHI GCGC 2 cut(s) 658, 692
BstKTI GATC 1 cut(s) 479
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 476
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstNI CCWGG 2 cut(s) 72, 414
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 70, 412
BstSFI CTRYAG 2 cut(s) 523, 540
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 81, 264
Cac8I GCNNGC 1 cut(s) 544
CfoI GCGC 2 cut(s) 658, 692
Cfr13I GGNCC 1 cut(s) 453
Csp6I GTAC 3 cut(s) 399, 502, 592
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 6 cut(s) 119, 156, 163, 317, 631, 659
CviJI RGCY 6 cut(s) 17, 440, 518, 604, 626, 700
CviKI_1 RGCY 6 cut(s) 17, 440, 518, 604, 626, 700
CviQI GTAC 3 cut(s) 399, 502, 592
DdeI CTNAG 2 cut(s) 256, 393
DpnI GATC 1 cut(s) 478
DpnII GATC 1 cut(s) 476
DraI TTTAAA 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 2 cut(s) 250, 373
Ecl136II GAGCTC 1 cut(s) 700
Eco24I GRGCYC 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 453
Eco53kI GAGCTC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 700
EcoNI CCTNNNNNAGG 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 70, 412
EcoT22I ATGCAT 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 702
FaeI CATG 6 cut(s) 122, 159, 166, 320, 634, 662
FalI AAGNNNNNCTT 4 cut(s) 133, 165, 588, 620
FaqI GGGAC 1 cut(s) 593
FatI CATG 6 cut(s) 118, 155, 162, 316, 630, 658
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 702
FspBI CTAG 2 cut(s) 113, 278
FspI TGCGCA 1 cut(s) 657
GlaI GCGC 2 cut(s) 657, 691
HapII CCGG 2 cut(s) 451, 736
HhaI GCGC 2 cut(s) 658, 692
Hin1II CATG 6 cut(s) 122, 159, 166, 320, 634, 662
Hin6I GCGC 2 cut(s) 656, 690
HinP1I GCGC 2 cut(s) 656, 690
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 4 cut(s) 97, 380, 409, 443
HpaII CCGG 2 cut(s) 451, 736
HphI GGTGA 2 cut(s) 277, 281
Hpy166II GTNNAC 4 cut(s) 183, 285, 502, 727
Hpy188III TCNNGA 4 cut(s) 484, 565, 703, 736
Hpy8I GTNNAC 4 cut(s) 183, 285, 502, 727
HpyAV CCTTC 8 cut(s) 57, 256, 260, 287, 529, 621, 626, 637
HpyCH4III ACNGT 2 cut(s) 90, 187
HpyCH4V TGCA 3 cut(s) 304, 339, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 2 cut(s) 256, 393
Hsp92II CATG 6 cut(s) 122, 159, 166, 320, 634, 662
HspAI GCGC 2 cut(s) 656, 690
Kpn2I TCCGGA 1 cut(s) 735
Kzo9I GATC 1 cut(s) 476
LweI GCATC 2 cut(s) 291, 541
MaeI CTAG 2 cut(s) 113, 278
MaeIII GTNAC 2 cut(s) 74, 269
MalI GATC 1 cut(s) 478
MboI GATC 1 cut(s) 476
MboII GAAGA 5 cut(s) 46, 50, 59, 389, 580
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 3 cut(s) 238, 331, 507
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 3 cut(s) 87, 338, 474
Mph1103I ATGCAT 1 cut(s) 306
MroI TCCGGA 1 cut(s) 735
MseI TTAA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 2 cut(s) 451, 736
MspR9I CCNGG 2 cut(s) 72, 414
MvaI CCWGG 2 cut(s) 72, 414
MwoI GCNNNNNNNGC 1 cut(s) 345
NdeII GATC 1 cut(s) 476
NlaIII CATG 6 cut(s) 122, 159, 166, 320, 634, 662
NlaIV GGNNCC 1 cut(s) 583
NmuCI GTSAC 1 cut(s) 269
NsbI TGCGCA 1 cut(s) 657
NsiI ATGCAT 1 cut(s) 306
NspI RCATGY 1 cut(s) 166
PciI ACATGT 1 cut(s) 162
PfeI GAWTC 4 cut(s) 97, 380, 409, 443
PflMI CCANNNNNTGG 1 cut(s) 673
PscI ACATGT 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 70, 412
PspGI CCWGG 2 cut(s) 70, 412
PspN4I GGNNCC 1 cut(s) 583
PspPI GGNCC 1 cut(s) 453
PstI CTGCAG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 3 cut(s) 400, 503, 593
RsaNI GTAC 3 cut(s) 399, 502, 592
SacI GAGCTC 1 cut(s) 702
SaqAI TTAA 1 cut(s) 245
Sau3AI GATC 1 cut(s) 476
Sau96I GGNCC 1 cut(s) 453
ScaI AGTACT 1 cut(s) 400
ScrFI CCNGG 2 cut(s) 72, 414
SduI GDGCHC 1 cut(s) 702
SetI ASST 8 cut(s) 49, 63, 139, 271, 290, 442, 606, 702
SfaNI GCATC 2 cut(s) 291, 541
SfcI CTRYAG 2 cut(s) 523, 540
SinI GGWCC 1 cut(s) 453
Sse9I AATT 3 cut(s) 238, 331, 507
SsiI CCGC 3 cut(s) 104, 235, 384
SspI AATATT 1 cut(s) 494
SspMI CTAG 2 cut(s) 113, 278
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 2 cut(s) 70, 412
TaaI ACNGT 2 cut(s) 90, 187
TaqI TCGA 1 cut(s) 696
TasI AATT 3 cut(s) 238, 331, 507
TatI WGTACW 2 cut(s) 398, 501
TfiI GAWTC 4 cut(s) 97, 380, 409, 443
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 2 cut(s) 88, 264
TseFI GTSAC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 4 cut(s) 306, 381, 567, 619
TspRI CASTG 2 cut(s) 88, 264
Van91I CCANNNNNTGG 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 453
XagI CCTNNNNNAGG 1 cut(s) 523
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XspI CTAG 2 cut(s) 113, 278
ZrmI AGTACT 1 cut(s) 400
Zsp2I ATGCAT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.