Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8137334.1

Orthogroup ID

OG0000235

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 352

Gene Structure 352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8137334.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

gcagttccagtggacttcagtagggagcatcttcctcagggctactacaacattgtgctgaaaaatttgaagggacaaaaatggaaagtgaaagtcgtctgttctggtaaaacagttaaactttctgcagggtgggtggagtttagacgtgctaatcaaattaactgcggagatatttgcacatttgatcttgtgggaagaaggaccatggtggttcacgttattccaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

77

Amino Acids

8.74

Weight (kDa)

9.88

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica	MD05G1072700.v1.1
prunus_persica	Prupe.8G113100_v2.0.a1
pyrus_communis	pycom05g06500 pycom10g06950
rosa_chinensis	RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata	RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora	Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii	Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa	Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha	Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana	Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	70
AjiI	CACGTC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	204
AxyI	CCTNAGG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	8
Bse21I	CCTNAGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	126
Bsu36I	CCTNAGG	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	207
BtrI	CACGTC	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	204
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	1 cut(s)	42
CviKI_1	RGCY	1 cut(s)	42
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	204
Eco81I	CCTNAGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	211
FaiI	YATR	1 cut(s)	209
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	207
Hin1II	CATG	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	13, 217
Hpy8I	GTNNAC	2 cut(s)	13, 217
HpyAV	CCTTC	2 cut(s)	64, 195
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	2 cut(s)	148, 219
HpyCH4V	TGCA	2 cut(s)	128, 180
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	2 cut(s)	148, 219
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	21, 23, 90, 114
LweI	GCATC	1 cut(s)	37
MaeII	ACGT	2 cut(s)	148, 219
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	23, 210
MluCI	AATT	2 cut(s)	64, 159
MnlI	CCTC	1 cut(s)	45
MseI	TTAA	2 cut(s)	117, 162
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	117, 162
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	204
SetI	ASST	2 cut(s)	151, 222
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	126
SgeI	CNNG	8 cut(s)	20, 50, 117, 141, 161, 203, 220, 230
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	2 cut(s)	64, 159
SsiI	CCGC	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	2 cut(s)	151, 222
TasI	AATT	2 cut(s)	64, 159
Tru1I	TTAA	2 cut(s)	117, 162
Tru9I	TTAA	2 cut(s)	117, 162
TscAI	CASTG	1 cut(s)	15
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.