Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009049.1

Orthogroup ID

OG0000235

Physical Location & Seq

Genomic Coordinates Forward (+)

2753 .. 3609

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009049.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggggaggaaaatactcaggaaagttactgagaagaagaggcctaccttcttccagcttattcatcctcgtctcacaactgaacatctgtacattgcaaaagatctgtctgaaagggcaacgttgaaattggagcgatcttcagagtgttcatggagtgtgatagtgaggaaatcaggaagagatgtgtatttcaaggatgggtggcaggagttcttgagagataactccttgggtgacaaagaattcttagtgttcatctacgatggaaaaatgcgattcagcgtaaagattttcaacaagaatgggtgtgagagaatggatttccataacataaaagcacatcaaaactccacagtttctaagagtactaaaaggcctaggggtagaccaagaaaatgtagcaaagccaattcagctgataaagaggtcaaagaagtagaagaagaagaagaagaagaagaagattacaatgacaaccctgctcaggaatatgctgaattgtttgaatctgaaatccgccagtttacaagcgccatttatgtacacctcacaatgtggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

187

Amino Acids

22.21

Weight (kDa)

8.66

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica	MD05G1072700.v1.1
prunus_persica	Prupe.8G113100_v2.0.a1
pyrus_communis	pycom05g06500 pycom10g06950
rosa_chinensis	RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata	RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora	Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii	Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa	Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha	Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana	Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	388
AciI	CCGC	1 cut(s)	520
AclI	AACGTT	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	558
AfaI	GTAC	3 cut(s)	92, 370, 546
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	4 cut(s)	127, 196, 298, 509
AluBI	AGCT	2 cut(s)	58, 419
AluI	AGCT	2 cut(s)	58, 419
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	2 cut(s)	41, 377
ApoI	RAATTY	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspA2I	CCTAGG	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	248
AvrII	CCTAGG	1 cut(s)	380
BccI	CCATC	2 cut(s)	194, 260
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	537
BglII	AGATCT	1 cut(s)	103
BlnI	CCTAGG	1 cut(s)	380
BmcAI	AGTACT	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	231, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	523
Bse3DI	GCAATG	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	231, 380
BseGI	GGATG	2 cut(s)	64, 205
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	3 cut(s)	21, 31, 500
BseNI	ACTGG	1 cut(s)	523
BshFI	GGCC	2 cut(s)	43, 379
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	43, 379
Bsp1407I	TGTACA	2 cut(s)	90, 544
Bsp143I	GATC	2 cut(s)	103, 137
BspACI	CCGC	1 cut(s)	520
BspANI	GGCC	2 cut(s)	43, 379
BspCNI	CTCAG	3 cut(s)	22, 30, 499
BsrDI	GCAATG	1 cut(s)	93
BsrGI	TGTACA	2 cut(s)	90, 544
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	2 cut(s)	231, 380
BssMI	GATC	2 cut(s)	103, 137
BssT1I	CCWWGG	2 cut(s)	231, 380
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	32, 175
BstAUI	TGTACA	2 cut(s)	90, 544
BstDEI	CTNAG	5 cut(s)	17, 30, 250, 363, 486
BstF5I	GGATG	2 cut(s)	64, 205
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	2 cut(s)	106, 140
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	103, 137
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	43, 379
BtsCI	GGATG	2 cut(s)	64, 205
CfoI	GCGC	1 cut(s)	536
Csp6I	GTAC	3 cut(s)	91, 369, 545
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	5 cut(s)	43, 58, 379, 410, 419
CviKI_1	RGCY	5 cut(s)	43, 58, 379, 410, 419
CviQI	GTAC	3 cut(s)	91, 369, 545
DdeI	CTNAG	5 cut(s)	17, 30, 250, 363, 486
DpnI	GATC	2 cut(s)	105, 139
DpnII	GATC	2 cut(s)	103, 137
DraIII	CACNNNGTG	1 cut(s)	558
Eam1104I	CTCTTC	2 cut(s)	32, 175
EarI	CTCTTC	2 cut(s)	32, 175
EciI	GGCGGA	1 cut(s)	509
Eco130I	CCWWGG	2 cut(s)	231, 380
Eco147I	AGGCCT	2 cut(s)	43, 379
Eco57I	CTGAAG	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	245
EcoT14I	CCWWGG	2 cut(s)	231, 380
ErhI	CCWWGG	2 cut(s)	231, 380
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	1 cut(s)	156
FaiI	YATR	5 cut(s)	154, 330, 335, 495, 543
FatI	CATG	1 cut(s)	152
FblI	GTMKAC	1 cut(s)	388
FokI	GGATG	2 cut(s)	51, 212
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	1 cut(s)	535
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	43, 379
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HinfI	GANTC	2 cut(s)	279, 509
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	3 cut(s)	389, 528, 547
Hpy188I	TCNGA	3 cut(s)	112, 145, 514
Hpy188III	TCNNGA	4 cut(s)	19, 177, 217, 488
Hpy8I	GTNNAC	3 cut(s)	389, 528, 547
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	5 cut(s)	17, 30, 250, 363, 486
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	156
HspAI	GCGC	1 cut(s)	534
Kzo9I	GATC	2 cut(s)	103, 137
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	7 cut(s)	4, 68, 162, 194, 473, 495, 536
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	2 cut(s)	25, 236
MalI	GATC	2 cut(s)	105, 139
MboI	GATC	2 cut(s)	103, 137
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	4 cut(s)	128, 245, 412, 500
MnlI	CCTC	5 cut(s)	33, 78, 162, 421, 560
MspA1I	CMGCKG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	2 cut(s)	103, 137
NlaIII	CATG	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	236
PceI	AGGCCT	2 cut(s)	43, 379
PfeI	GAWTC	2 cut(s)	279, 509
Psp1406I	AACGTT	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	3 cut(s)	92, 370, 546
RsaNI	GTAC	3 cut(s)	91, 369, 545
Sau3AI	GATC	2 cut(s)	103, 137
ScaI	AGTACT	1 cut(s)	370
SetI	ASST	6 cut(s)	50, 60, 125, 421, 432, 552
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	4 cut(s)	128, 245, 412, 500
SseBI	AGGCCT	2 cut(s)	43, 379
SsiI	CCGC	1 cut(s)	520
SspMI	CTAG	1 cut(s)	381
StuI	AGGCCT	2 cut(s)	43, 379
StyI	CCWWGG	2 cut(s)	231, 380
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	125
TasI	AATT	4 cut(s)	128, 245, 412, 500
TatI	WGTACW	3 cut(s)	90, 368, 544
TfiI	GAWTC	2 cut(s)	279, 509
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	53, 141, 247
XapI	RAATTY	1 cut(s)	245
XmaJI	CCTAGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	388
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.