Rh6BG102600

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000235
Physical Location & Seq
Forward (+)
15910173 .. 15912962
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG102600.1

Sequence Viewer

Length: 1101 bp
ATGGCGAGAGCAGGATTCAACAATGGTGGTATGGAGGAGCAGAAGGGTCCTACCTTCTTTAAGATAATCAAGCCCGGATTCAACACAGATCATCTGAGAATCCCACCAGCATTCAGGAAGCACATCTTGAATGAACTCTCTATGAGGGCAACTTTGACTCTGAGCAGTTCTGCTGATTCTTCATGGAATGTCAGAGCCCATAAAATAGGAAGGGATATTTATCTCAAGGAAGGCTGGCAAGAGTTTGTAAGAGATAACTCCTTAGGTGATTCAGAGTTCTTGATGTTTGGATATGATGGAAATATGCATTTCAGCATAGATATTTTTGAGAAGAATTGTTGTAAGAGAACCAAAGCTCCTGCTTTGAGAAGGCATCAACAATCCACCTTTACTAACAATACTAAAAGACCACGTGGTAGACCAAGAAAGAGCGGTGATGCAGCTGAACACACTCTAAATGGTGAATCCAGAAACAGTACTAAAAGACCTCGTGGTAGACCAAGAAAGAGCGGTGATGCAGCTGAACACACTCTAAATGGTGAATCCAGAAACAGTACTAAAAGACCTCGTGGTAGACCAAGAATGAGCGGTGATGCAGCTGAACACACTCTAAATGGTGAATCCAGAAACAGTACTAAAAGACCTCGTGGTAGACCAAGAAAGAGCGGTGATGCAGCTGAACACACTCTAAATGGTGAATCCAGAAACAGTACTAAAAGACCTCGTGGTAGACCAAGAAAGAGCGGGGATGCAGCTGAACACACTCCAAATGGTGAATCCAGTATTCCCATAGAGTATACTGAATCAAGATTCCCCGCTTTTATCCGAACCATTAATAAAGTCTATGGAGTGGATTTGCCCACAGGCTTCTGTAGGAAGCATCTTCCTCCTGACTACTACAAATTCATCCTGGAAAATACAGAGGGAGACAGATGGGAAGCGAATGGTGTTCCTAGCAATAATACAATTCTGTTGTCTAGAGGATGGGTTTCTTTTGCACGGGGTAACGGAGTTGAAATAGGAGATGATTGCTTGTTTGAGCTCCAGAGCAAAAGCAAGATGGTGGTTCACATAATTAGGCAAAACAACTTATCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

366

Amino Acids

41.34

Weight (kDa)

10.19

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 19 - 112 4.3e-15 B3 DNA binding domain
B3 PF02362 285 - 362 1.1e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 5 cut(s) 432, 510, 588, 666, 744
AccI GTMKAC 6 cut(s) 418, 496, 574, 652, 730, 797
AciI CCGC 6 cut(s) 432, 510, 588, 666, 744, 816
AcsI RAATTY 1 cut(s) 902
AcvI CACGTG 1 cut(s) 413
AfaI GTAC 4 cut(s) 478, 556, 634, 712
AgsI TTSAA 4 cut(s) 19, 82, 130, 1016
AjnI CCWGG 1 cut(s) 909
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 7 cut(s) 356, 443, 521, 599, 677, 755, 1042
AluI AGCT 7 cut(s) 356, 443, 521, 599, 677, 755, 1042
Alw21I GWGCWC 1 cut(s) 1044
Alw26I GTCTC 1 cut(s) 921
ApeKI GCWGC 5 cut(s) 440, 518, 596, 674, 752
ApoI RAATTY 1 cut(s) 902
AseI ATTAAT 1 cut(s) 834
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 75
AvaII GGWCC 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 262
BanII GRGCYC 2 cut(s) 199, 1044
BauI CACGAG 4 cut(s) 489, 567, 645, 723
BbrPI CACGTG 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 5 cut(s) 452, 530, 608, 686, 764
BccI CCATC 4 cut(s) 290, 927, 978, 1054
BciT130I CCWGG 1 cut(s) 911
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 921
BfaI CTAG 2 cut(s) 954, 978
BfmI CTRYAG 1 cut(s) 871
BisI GCNGC 5 cut(s) 441, 519, 597, 675, 753
BlsI GCNGC 5 cut(s) 442, 520, 598, 676, 754
BmcAI AGTACT 4 cut(s) 478, 556, 634, 712
Bme1390I CCNGG 2 cut(s) 75, 911
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 2 cut(s) 75, 911
BmsI GCATC 7 cut(s) 382, 427, 505, 583, 661, 739, 889
BpmI CTGGAG 1 cut(s) 1028
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bse1I ACTGG 1 cut(s) 780
Bse21I CCTNAGG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 1 cut(s) 911
BseGI GGATG 3 cut(s) 754, 906, 989
BseJI GATNNNNATC 1 cut(s) 219
BseMII CTCAG 2 cut(s) 86, 152
BseNI ACTGG 1 cut(s) 780
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 5 cut(s) 452, 530, 608, 686, 764
BsiHKAI GWGCWC 1 cut(s) 1044
BsiSI CCGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 921
BsmI GAATGC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 199, 1044
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 6 cut(s) 432, 510, 588, 666, 744, 816
BspCNI CTCAG 2 cut(s) 87, 153
BspLI GGNNCC 1 cut(s) 48
BsrBI CCGCTC 5 cut(s) 432, 510, 588, 666, 744
BsrI ACTGG 1 cut(s) 780
BssMI GATC 1 cut(s) 88
BssNAI GTATAC 1 cut(s) 798
BssSI CACGAG 4 cut(s) 489, 567, 645, 723
Bst1107I GTATAC 1 cut(s) 798
Bst2BI CACGAG 4 cut(s) 489, 567, 645, 723
Bst2UI CCWGG 1 cut(s) 911
Bst4CI ACNGT 4 cut(s) 476, 554, 632, 710
BstBAI YACGTR 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 3 cut(s) 95, 161, 262
BstF5I GGATG 3 cut(s) 754, 906, 989
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 911
BstSCI CCNGG 2 cut(s) 73, 909
BstSFI CTRYAG 1 cut(s) 871
BstV1I GCAGC 5 cut(s) 452, 530, 608, 686, 764
BstZ17I GTATAC 1 cut(s) 798
Bsu36I CCTNAGG 1 cut(s) 262
BtsCI GGATG 3 cut(s) 754, 906, 989
Cac8I GCNNGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 4 cut(s) 477, 555, 633, 711
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 183
CviQI GTAC 4 cut(s) 477, 555, 633, 711
DdeI CTNAG 3 cut(s) 95, 161, 262
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 1042
Eco24I GRGCYC 2 cut(s) 199, 1044
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 1042
Eco72I CACGTG 1 cut(s) 413
Eco81I CCTNAGG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 1042
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 909
EcoT22I ATGCAT 1 cut(s) 309
EcoT38I GRGCYC 2 cut(s) 199, 1044
FaeI CATG 1 cut(s) 186
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 1 cut(s) 182
FauI CCCGC 2 cut(s) 737, 823
FblI GTMKAC 6 cut(s) 418, 496, 574, 652, 730, 797
Fnu4HI GCNGC 5 cut(s) 441, 519, 597, 675, 753
FokI GGATG 3 cut(s) 761, 893, 996
FriOI GRGCYC 2 cut(s) 199, 1044
Fsp4HI GCNGC 5 cut(s) 441, 519, 597, 675, 753
FspBI CTAG 2 cut(s) 954, 978
GluI GCNGC 5 cut(s) 441, 519, 597, 675, 753
GsuI CTGGAG 1 cut(s) 1028
HapII CCGG 1 cut(s) 75
Hin1II CATG 1 cut(s) 186
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 7 cut(s) 419, 497, 575, 653, 731, 798, 1069
Hpy188I TCNGA 5 cut(s) 96, 162, 194, 274, 827
Hpy8I GTNNAC 7 cut(s) 419, 497, 575, 653, 731, 798, 1069
HpyAV CCTTC 5 cut(s) 37, 64, 204, 224, 363
HpyCH4III ACNGT 4 cut(s) 476, 554, 632, 710
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 7 cut(s) 307, 440, 518, 596, 674, 752, 998
HpyF3I CTNAG 3 cut(s) 95, 161, 262
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 1 cut(s) 186
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 37, 361, 1047
Lsp1109I GCAGC 5 cut(s) 452, 530, 608, 686, 764
LweI GCATC 7 cut(s) 382, 427, 505, 583, 661, 739, 889
MaeI CTAG 2 cut(s) 954, 978
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 1004
MalI GATC 1 cut(s) 90
MbiI CCGCTC 5 cut(s) 432, 510, 588, 666, 744
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 171, 343, 875
MhlI GDGCHC 2 cut(s) 199, 1044
MluCI AATT 4 cut(s) 334, 902, 966, 1074
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 9 cut(s) 28, 138, 498, 576, 654, 732, 897, 916, 974
Mph1103I ATGCAT 1 cut(s) 309
MseI TTAA 2 cut(s) 60, 834
MspA1I CMGCKG 5 cut(s) 443, 521, 599, 677, 755
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 75, 911
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 1 cut(s) 911
NciI CCSGG 1 cut(s) 75
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 309
PctI GAATGC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 909
PkrI GCNGC 5 cut(s) 442, 520, 598, 676, 754
PleI GAGTC 1 cut(s) 151
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 413
PpuMI RGGWCCY 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 834
Psp124BI GAGCTC 1 cut(s) 1044
Psp5II RGGWCCY 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 909
PspCI CACGTG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 909
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
PvuII CAGCTG 5 cut(s) 443, 521, 599, 677, 755
RsaI GTAC 4 cut(s) 478, 556, 634, 712
RsaNI GTAC 4 cut(s) 477, 555, 633, 711
SacI GAGCTC 1 cut(s) 1044
SaqAI TTAA 2 cut(s) 60, 834
SatI GCNGC 5 cut(s) 441, 519, 597, 675, 753
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 4 cut(s) 478, 556, 634, 712
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 2 cut(s) 75, 911
SduI GDGCHC 2 cut(s) 199, 1044
SfaNI GCATC 7 cut(s) 382, 427, 505, 583, 661, 739, 889
SfcI CTRYAG 1 cut(s) 871
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 334, 902, 966, 1074
SsiI CCGC 6 cut(s) 432, 510, 588, 666, 744, 816
SspMI CTAG 2 cut(s) 954, 978
SstI GAGCTC 1 cut(s) 1044
StyD4I CCNGG 2 cut(s) 73, 909
TaaI ACNGT 4 cut(s) 476, 554, 632, 710
TaiI ACGT 1 cut(s) 415
TasI AATT 4 cut(s) 334, 902, 966, 1074
TatI WGTACW 4 cut(s) 476, 554, 632, 710
Tru1I TTAA 2 cut(s) 60, 834
Tru9I TTAA 2 cut(s) 60, 834
TseI GCWGC 5 cut(s) 440, 518, 596, 674, 752
TspDTI ATGAA 3 cut(s) 147, 171, 895
TspGWI ACGGA 1 cut(s) 1023
VpaK11BI GGWCC 1 cut(s) 47
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 1 cut(s) 902
XbaI TCTAGA 1 cut(s) 977
XmiI GTMKAC 6 cut(s) 418, 496, 574, 652, 730, 797
XspI CTAG 2 cut(s) 954, 978
ZrmI AGTACT 4 cut(s) 478, 556, 634, 712
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.