Rh6BG103800

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000235
Physical Location & Seq
Forward (+)
16076228 .. 16088367
12140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG103800.1

Sequence Viewer

Length: 483 bp
ATGGCGAGAACAACATTCAACAATGGTGGTATGGAAGGAAAAAAGGGCCCTACGTTCTTCAAGATCATAAAAACCGGTTTCAACACTGAGGATTTGAGAATCCCACCCAAATTCCGGAGACACCTGTTGAATGAACTCTCCGACAGGGCAACTTTGAATTTAATGGATTCTTCAAATAGTTCATGGACTGTTGATGTGAGCCAAACAGAAGGGGAGATATATTTCAAGAATGGATGGCAGAAGTTTGTAAGAGATAACTCCTTAGAAATGCGAGTAAGAGGATCACGTTTCCAGATGTCAGAACACACAGACGAGGTATACACACTCAAAGTTGTCAATCCAACAAACTCAAAGAGGTTAAAGAAGAGGAGGAAGATTACCAAGATAACAAAGAAGAAGAAGCTGCCACATTGCACAAAACTTTTACAAGCATTGTTGGACAAAACTTTTATAATTTGGCAGTTCCTACAGACTTTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

160

Amino Acids

18.8

Weight (kDa)

10.28

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 19 - 90 7.3e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
AccI GTMKAC 1 cut(s) 318
AccIII TCCGGA 1 cut(s) 114
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 2 cut(s) 110, 157
AfiI CCNNNNNNNGG 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 7 cut(s) 19, 61, 82, 130, 157, 174, 226
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 1 cut(s) 289
Aor13HI TCCGGA 1 cut(s) 114
AoxI GGCC 1 cut(s) 46
ApaI GGGCCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 403
ApoI RAATTY 2 cut(s) 110, 157
AsiGI ACCGGT 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 46, 47
BaeGI GKGCMC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 390
BccI CCATC 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 112
BfmI CTRYAG 1 cut(s) 467
BisI GCNGC 1 cut(s) 404
BlsI GCNGC 1 cut(s) 405
BmgT120I GGNCC 2 cut(s) 46, 47
BmiI GGNNCC 1 cut(s) 48
BsaWI WCCGGW 2 cut(s) 74, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 409
BseAI TCCGGA 1 cut(s) 114
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 382
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 1 cut(s) 390
BshFI GGCC 1 cut(s) 48
BshTI ACCGGT 1 cut(s) 74
BsiSI CCGG 2 cut(s) 75, 115
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 48
Bsp120I GGGCCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 50
Bsp13I TCCGGA 1 cut(s) 114
Bsp143I GATC 2 cut(s) 63, 281
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 79
BspEI TCCGGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 409
BsrFI RCCGGY 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 2 cut(s) 63, 281
BssNAI GTATAC 1 cut(s) 319
Bst1107I GTATAC 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 359
BstDEI CTNAG 2 cut(s) 87, 262
BstF5I GGATG 1 cut(s) 239
BstKTI GATC 2 cut(s) 66, 284
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 63, 281
BstSFI CTRYAG 1 cut(s) 467
BstSLI GKGCMC 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 390
BstZ17I GTATAC 1 cut(s) 319
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 46, 47
CspAI ACCGGT 1 cut(s) 74
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 183
CviJI RGCY 3 cut(s) 48, 201, 403
CviKI_1 RGCY 3 cut(s) 48, 201, 403
DdeI CTNAG 2 cut(s) 87, 262
DpnI GATC 2 cut(s) 65, 283
DpnII GATC 2 cut(s) 63, 281
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 50
EcoO109I RGGNCCY 2 cut(s) 46, 47
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 1 cut(s) 186
FaiI YATR 7 cut(s) 32, 68, 184, 220, 319, 452, 481
FatI CATG 1 cut(s) 182
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 1 cut(s) 404
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 404
GluI GCNGC 1 cut(s) 404
HaeIII GGCC 1 cut(s) 48
HapII CCGG 2 cut(s) 75, 115
Hin1II CATG 1 cut(s) 186
HinfI GANTC 2 cut(s) 99, 167
HpaII CCGG 2 cut(s) 75, 115
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 142, 301
Hpy188III TCNNGA 4 cut(s) 61, 115, 226, 292
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 29, 203
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 2 cut(s) 53, 286
HpyCH4V TGCA 1 cut(s) 414
HpyF3I CTNAG 2 cut(s) 87, 262
HpySE526I ACGT 2 cut(s) 53, 286
Hsp92II CATG 1 cut(s) 186
Kpn2I TCCGGA 1 cut(s) 114
Kzo9I GATC 2 cut(s) 63, 281
LpnPI CCDG 5 cut(s) 88, 128, 130, 137, 305
Lsp1109I GCAGC 1 cut(s) 390
MaeII ACGT 2 cut(s) 53, 286
MalI GATC 2 cut(s) 65, 283
MboI GATC 2 cut(s) 63, 281
MboII GAAGA 6 cut(s) 49, 162, 376, 385, 406, 409
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 3 cut(s) 110, 157, 453
MmeI TCCRAC 3 cut(s) 165, 365, 417
MnlI CCTC 6 cut(s) 82, 272, 307, 348, 360, 363
MroI TCCGGA 1 cut(s) 114
MseI TTAA 2 cut(s) 161, 359
MspI CCGG 2 cut(s) 75, 115
NdeII GATC 2 cut(s) 63, 281
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 99, 167
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 1 cut(s) 405
PsiI TTATAA 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 48
PspOMI GGGCCC 1 cut(s) 46
PspPI GGNCC 2 cut(s) 46, 47
SaqAI TTAA 2 cut(s) 161, 359
SatI GCNGC 1 cut(s) 404
Sau3AI GATC 2 cut(s) 63, 281
Sau96I GGNCC 2 cut(s) 46, 47
SduI GDGCHC 1 cut(s) 50
SetI ASST 6 cut(s) 56, 126, 289, 318, 359, 405
SfcI CTRYAG 1 cut(s) 467
Sse9I AATT 3 cut(s) 110, 157, 453
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 2 cut(s) 56, 289
TasI AATT 3 cut(s) 110, 157, 453
TfiI GAWTC 2 cut(s) 99, 167
Tru1I TTAA 2 cut(s) 161, 359
Tru9I TTAA 2 cut(s) 161, 359
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 403
TspDTI ATGAA 2 cut(s) 147, 171
TspRI CASTG 1 cut(s) 91
XapI RAATTY 2 cut(s) 110, 157
XmiI GTMKAC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.