RchiOBHm_Chr6g0259881

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000235
Physical Location & Seq
Forward (+)
15099213 .. 15102598
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23304

Sequence Viewer

Length: 906 bp
ATGGTGAGACCCAAGAATGGTATCAAAGAAAAGCGGCCTTCATTTTTCAAGGTTATTATTCCAGGCTATTCCACTCAACATTTGAGGATCCCACCACCATTCTTGGAGTTTATAAGGAATGACCTATCTGATGAAGCAACCTTGAACTCGAACACTTGTTCAGAGAGGTCTTGGAATGTTAGAGTACGTAAAACAAAAGGAGGTGTGTATTTCAAGGATGGGTGGCAGGGGTTCTTAAAAGATAACTCTGTGGAAGATGGTGACTTTTTGGTATTCGAGTATGAAGGAAACATGCATTTCAGCGTACAGATTTTTGACAACAGTTGTTGTGAGAGAGACTCTTTTCCTGACATTGAAACACACACAAAATCCACCTTTGCTGAGTGTAAGAAAAGGCATCCTGGTAGACAGAGGAAATCAGATATCGGTTGTTCTAAGCGTCCCCTCGCATTGAACTCTAGAAAAGACAATTCAGATAACATAGCTAAGAAAAGGCTTCCTGGTAGACCAAGAAAATCCCATATCCGTCGTTATAAGCGCCCCTGCCCATCAAACTCTGGCGAAGACAATTCAGTACCAGATGACATAGTTGAGGAATCTGCAAAATCTTTCAAGTCCAACTATCCTCATGTCAAAAAAGCCATTAAAGAGACTTTTTGTGTGTACTCATTCCCCACATCCTTCTATAGGGAGCATCTCTCTGGGGGCAACTATGAAGTTGTTTTCCTGAAAATTGCAGGGGGGAAAAGATGGTACCAAGTGAAGCTTGTACGATCCCTAAGAACGGCATACTTGTCCAAAGGGTGGTCTGAGTTTGCATGTGCTAACCAAATCAAGGTCGGAAATATTTGCGTATTTGAAGTTGTGGAAGAAAACAAATTGGTGGTTCACGTAGTCCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

301

Amino Acids

34.69

Weight (kDa)

9.49

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 15 - 107 2.6e-18 B3 DNA binding domain
B3 PF02362 223 - 299 4e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 113, 534
Acc65I GGTACC 1 cut(s) 753
AccB1I GGYRCC 1 cut(s) 753
AccB7I CCANNNNNTGG 1 cut(s) 804
AccI GTMKAC 2 cut(s) 406, 505
AciI CCGC 1 cut(s) 34
AclWI GGATC 3 cut(s) 82, 95, 768
AfaI GTAC 6 cut(s) 186, 306, 576, 665, 755, 771
AfiI CCNNNNNNNGG 5 cut(s) 17, 687, 784, 804, 835
AgsI TTSAA 7 cut(s) 49, 145, 214, 356, 454, 613, 860
AjnI CCWGG 3 cut(s) 61, 400, 499
AluBI AGCT 2 cut(s) 485, 766
AluI AGCT 2 cut(s) 485, 766
Alw26I GTCTC 2 cut(s) 330, 644
AlwI GGATC 3 cut(s) 82, 95, 768
AoxI GGCC 1 cut(s) 35
Asp718I GGTACC 1 cut(s) 753
AspLEI GCGC 1 cut(s) 540
AsuHPI GGTGA 2 cut(s) 16, 272
BamHI GGATCC 1 cut(s) 87
BanI GGYRCC 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 570
BccI CCATC 4 cut(s) 212, 251, 556, 744
BceAI ACGGC 1 cut(s) 801
BciT130I CCWGG 3 cut(s) 63, 402, 501
BcoDI GTCTC 2 cut(s) 330, 644
BfaI CTAG 1 cut(s) 459
BfmI CTRYAG 1 cut(s) 685
BfoI RGCGCY 1 cut(s) 541
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 3 cut(s) 63, 402, 501
BmiI GGNNCC 2 cut(s) 89, 755
BmrFI CCNGG 3 cut(s) 63, 402, 501
BmsI GCATC 2 cut(s) 406, 703
BpiI GAAGAC 1 cut(s) 570
BplI GAGNNNNNCTC 4 cut(s) 323, 355, 683, 715
BsaAI YACGTR 2 cut(s) 188, 892
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 687, 784, 804, 835
BseBI CCWGG 3 cut(s) 63, 402, 501
BseGI GGATG 3 cut(s) 223, 397, 677
BseLI CCNNNNNNNGG 5 cut(s) 17, 687, 784, 804, 835
BseMII CTCAG 2 cut(s) 372, 801
BshFI GGCC 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 753
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 5 cut(s) 17, 687, 784, 804, 835
BsmAI GTCTC 2 cut(s) 330, 644
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 87, 773
BspACI CCGC 1 cut(s) 34
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 2 cut(s) 373, 802
BspLI GGNNCC 2 cut(s) 89, 755
BspPI GGATC 3 cut(s) 82, 95, 768
BspT107I GGYRCC 1 cut(s) 753
BssMI GATC 2 cut(s) 87, 773
Bst2UI CCWGG 3 cut(s) 63, 402, 501
Bst4CI ACNGT 1 cut(s) 323
BstBAI YACGTR 2 cut(s) 188, 892
BstDEI CTNAG 5 cut(s) 381, 435, 486, 779, 810
BstENI CCTNNNNNAGG 1 cut(s) 685
BstF5I GGATG 3 cut(s) 223, 397, 677
BstH2I RGCGCY 1 cut(s) 541
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 2 cut(s) 90, 776
BstMAI GTCTC 2 cut(s) 330, 644
BstMBI GATC 2 cut(s) 87, 773
BstNI CCWGG 3 cut(s) 63, 402, 501
BstNSI RCATGY 2 cut(s) 295, 822
BstSCI CCNGG 3 cut(s) 61, 400, 499
BstSFI CTRYAG 1 cut(s) 685
BstSNI TACGTA 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 1 cut(s) 37
BtsCI GGATG 3 cut(s) 223, 397, 677
CfoI GCGC 1 cut(s) 540
CseI GACGC 1 cut(s) 428
Csp6I GTAC 6 cut(s) 185, 305, 575, 664, 754, 770
CspCI CAANNNNNGTGG 2 cut(s) 84, 119
CviAII CATG 3 cut(s) 292, 629, 819
CviJI RGCY 6 cut(s) 37, 66, 485, 496, 641, 766
CviKI_1 RGCY 6 cut(s) 37, 66, 485, 496, 641, 766
CviQI GTAC 6 cut(s) 185, 305, 575, 664, 754, 770
DdeI CTNAG 5 cut(s) 381, 435, 486, 779, 810
DpnI GATC 2 cut(s) 89, 775
DpnII GATC 2 cut(s) 87, 773
Eco105I TACGTA 1 cut(s) 188
Eco32I GATATC 1 cut(s) 424
EcoNI CCTNNNNNAGG 1 cut(s) 685
EcoRII CCWGG 3 cut(s) 61, 400, 499
EcoRV GATATC 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 297
FaeI CATG 3 cut(s) 295, 632, 822
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 1 cut(s) 426
FatI CATG 3 cut(s) 291, 628, 818
FblI GTMKAC 2 cut(s) 406, 505
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 3 cut(s) 230, 384, 664
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 459
GlaI GCGC 1 cut(s) 539
GluI GCNGC 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 541
HaeIII GGCC 1 cut(s) 37
HgaI GACGC 1 cut(s) 428
HhaI GCGC 1 cut(s) 540
Hin1II CATG 3 cut(s) 295, 632, 822
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 2 cut(s) 338, 596
HphI GGTGA 2 cut(s) 16, 272
Hpy166II GTNNAC 4 cut(s) 407, 506, 664, 889
Hpy188I TCNGA 6 cut(s) 130, 163, 421, 475, 811, 842
Hpy188III TCNNGA 3 cut(s) 347, 459, 727
Hpy8I GTNNAC 4 cut(s) 407, 506, 664, 889
Hpy99I CGWCG 1 cut(s) 531
HpyAV CCTTC 3 cut(s) 48, 278, 691
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 2 cut(s) 187, 891
HpyCH4V TGCA 4 cut(s) 295, 602, 737, 818
HpyF3I CTNAG 5 cut(s) 381, 435, 486, 779, 810
HpySE526I ACGT 2 cut(s) 187, 891
Hsp92II CATG 3 cut(s) 295, 632, 822
HspAI GCGC 1 cut(s) 538
KpnI GGTACC 1 cut(s) 757
Kzo9I GATC 2 cut(s) 87, 773
LmnI GCTCC 1 cut(s) 691
LweI GCATC 2 cut(s) 406, 703
MaeI CTAG 1 cut(s) 459
MaeII ACGT 2 cut(s) 187, 891
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 89, 775
MboI GATC 2 cut(s) 87, 773
MboII GAAGA 3 cut(s) 266, 575, 881
MflI RGATCY 1 cut(s) 87
MluCI AATT 4 cut(s) 469, 568, 732, 878
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 2 cut(s) 642, 820
MnlI CCTC 7 cut(s) 78, 159, 194, 405, 455, 586, 636
Mph1103I ATGCAT 1 cut(s) 297
MseI TTAA 2 cut(s) 236, 645
MspR9I CCNGG 3 cut(s) 63, 402, 501
MvaI CCWGG 3 cut(s) 63, 402, 501
NdeII GATC 2 cut(s) 87, 773
NlaIII CATG 3 cut(s) 295, 632, 822
NlaIV GGNNCC 2 cut(s) 89, 755
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 297
NspI RCATGY 2 cut(s) 295, 822
PfeI GAWTC 1 cut(s) 596
PflMI CCANNNNNTGG 1 cut(s) 804
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Ppu21I YACGTR 2 cut(s) 188, 892
PsiI TTATAA 2 cut(s) 113, 534
Psp6I CCWGG 3 cut(s) 61, 400, 499
PspGI CCWGG 3 cut(s) 61, 400, 499
PspN4I GGNNCC 2 cut(s) 89, 755
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 6 cut(s) 186, 306, 576, 665, 755, 771
RsaNI GTAC 6 cut(s) 185, 305, 575, 664, 754, 770
SaqAI TTAA 2 cut(s) 236, 645
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 87, 773
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 63, 402, 501
SfaNI GCATC 2 cut(s) 406, 703
SfcI CTRYAG 1 cut(s) 685
SnaBI TACGTA 1 cut(s) 188
Sse9I AATT 4 cut(s) 469, 568, 732, 878
SsiI CCGC 1 cut(s) 34
SspI AATATT 1 cut(s) 847
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 3 cut(s) 61, 400, 499
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 2 cut(s) 190, 894
TaqI TCGA 2 cut(s) 149, 276
TasI AATT 4 cut(s) 469, 568, 732, 878
TatI WGTACW 1 cut(s) 663
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 2 cut(s) 236, 645
Tru9I TTAA 2 cut(s) 236, 645
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 4 cut(s) 30, 147, 297, 729
TspGWI ACGGA 1 cut(s) 515
Van91I CCANNNNNTGG 1 cut(s) 804
XagI CCTNNNNNAGG 1 cut(s) 685
XbaI TCTAGA 1 cut(s) 458
XceI RCATGY 2 cut(s) 295, 822
XmiI GTMKAC 2 cut(s) 406, 505
XspI CTAG 1 cut(s) 459
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.