Rh6AG103100

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000235
Physical Location & Seq
Reverse (-)
15255167 .. 15259920
4754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG103100.1

Sequence Viewer

Length: 864 bp
ATGGCGAGGAGAATAGCCAAGAATGGTGGTATCAAGGAAGAGAGACCTTCTTTCTTCAAGGTCATTCTTCCCGGTTACAACACTGAACAGTTGTACTCAATTCCCACAGCCTTCTATAGGAAGCATCTTTCTGCAGGCAACTACGAAGTTGCTTTCCTGAAGATTTCAGGGGGAACCAAATGGTACAAAGTGAAGCTTGTCCCTTCCCTTCAAACAGCCTTCATGTCTAAAGGGTGGTCTGTGTTTGCGCATGATAACCAAATCGTGGTTGGAGATGTTTGCGCTTTCGAGCTCGTGAAAGCGAACAAAATGGATTGCTTTGCATTGAATTCAGTATTATATTGGACATCTAAAGGGTTGGAATTGCTGCAAGTTTATGCTAAAATTGCACTGAATTTTCCAAGAGTGAAAACTAAAGATCACACTCTCAAGCTTCAAGCTTCAAGCTCCAGGTCTTGCTTGACCATTTTGAACCTCCCATCTCAGGTGCCTCTGAGGAGAAAAATGGTGAGAAAGAATGGTGTCAAGGAAAAGAGGCCTTCATTCTTCAAGGTTATTCTTCCAGGTTACTCCACTGAACGTCTCTACTCAATTCCCACCACCTTCTACAGGGAGCATCTTTCTGCAGGCAAATATGAATTTGCTTTCCTGAAGATCTCAGGGGGAAACAAATGGTACAAAGTGAAGCTTGTCCCTTCCATTCGAACAGCCTTCATGTCAAAAGGGTGGGCTGCATTCGCGCGTGATAACCAGATCAAGGTTGGACATGTTTGCATTTTCGAGCTTGTGAAAGAGAACAAAATGGTGGTGCACAATTTAACATTCTCCGGAAATGATCAAGTTCAAGCTATTAACAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

287

Amino Acids

32.62

Weight (kDa)

10.01

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 18 - 102 5e-11 B3 DNA binding domain
B3 PF02362 182 - 270 1.4e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 487
AccB7I CCANNNNNTGG 1 cut(s) 265
AccII CGCG 2 cut(s) 740, 742
AccIII TCCGGA 1 cut(s) 827
AcsI RAATTY 3 cut(s) 328, 394, 638
AcuI CTGAAG 2 cut(s) 179, 671
AfaI GTAC 3 cut(s) 95, 185, 677
AfiI CCNNNNNNNGG 5 cut(s) 117, 265, 484, 609, 757
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 8 cut(s) 58, 212, 328, 437, 444, 472, 550, 845
AjnI CCWGG 2 cut(s) 449, 562
AluBI AGCT 8 cut(s) 196, 292, 433, 440, 447, 688, 784, 848
AluI AGCT 8 cut(s) 196, 292, 433, 440, 447, 688, 784, 848
Alw21I GWGCWC 2 cut(s) 294, 813
Alw26I GTCTC 2 cut(s) 37, 587
Alw44I GTGCAC 1 cut(s) 809
AlwNI CAGNNNCTG 1 cut(s) 861
Aor13HI TCCGGA 1 cut(s) 827
AoxI GGCC 1 cut(s) 536
ApaLI GTGCAC 1 cut(s) 809
ApeKI GCWGC 2 cut(s) 367, 731
ApoI RAATTY 3 cut(s) 328, 394, 638
AspLEI GCGC 3 cut(s) 250, 284, 742
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 520
AsuII TTCGAA 1 cut(s) 703
BaeGI GKGCMC 1 cut(s) 813
BanI GGYRCC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 294
BauI CACGAG 1 cut(s) 293
Bbv12I GWGCWC 2 cut(s) 294, 813
BbvI GCAGC 2 cut(s) 354, 718
BccI CCATC 1 cut(s) 487
BciT130I CCWGG 2 cut(s) 451, 564
BclI TGATCA 1 cut(s) 835
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 37, 587
BfmI CTRYAG 4 cut(s) 115, 132, 607, 624
BglII AGATCT 1 cut(s) 654
BisI GCNGC 2 cut(s) 368, 732
BlsI GCNGC 2 cut(s) 369, 733
Bme1390I CCNGG 3 cut(s) 72, 451, 564
BmiI GGNNCC 2 cut(s) 175, 489
BmrFI CCNGG 3 cut(s) 72, 451, 564
BmsI GCATC 2 cut(s) 133, 625
BpmI CTGGAG 1 cut(s) 433
Bpu14I TTCGAA 1 cut(s) 703
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 827
Bsc4I CCNNNNNNNGG 5 cut(s) 117, 265, 484, 609, 757
BseAI TCCGGA 1 cut(s) 827
BseBI CCWGG 2 cut(s) 451, 564
BseLI CCNNNNNNNGG 5 cut(s) 117, 265, 484, 609, 757
BseMII CTCAG 3 cut(s) 485, 497, 672
BseRI GAGGAG 2 cut(s) 22, 511
BseSI GKGCMC 1 cut(s) 813
BseXI GCAGC 2 cut(s) 354, 718
Bsh1236I CGCG 2 cut(s) 740, 742
BshFI GGCC 1 cut(s) 538
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 2 cut(s) 294, 813
BsiSI CCGG 2 cut(s) 72, 828
BslFI GGGAC 2 cut(s) 185, 677
BslI CCNNNNNNNGG 5 cut(s) 117, 265, 484, 609, 757
BsmAI GTCTC 2 cut(s) 37, 587
BsmBI CGTCTC 1 cut(s) 587
BsmFI GGGAC 2 cut(s) 185, 677
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 1 cut(s) 538
Bso31I GGTCTC 1 cut(s) 37
Bsp119I TTCGAA 1 cut(s) 703
Bsp1286I GDGCHC 2 cut(s) 294, 813
Bsp13I TCCGGA 1 cut(s) 827
Bsp143I GATC 4 cut(s) 418, 654, 753, 835
BspANI GGCC 1 cut(s) 538
BspCNI CTCAG 3 cut(s) 486, 496, 671
BspEI TCCGGA 1 cut(s) 827
BspFNI CGCG 2 cut(s) 740, 742
BspLI GGNNCC 2 cut(s) 175, 489
BspMAI CTGCAG 2 cut(s) 136, 628
BspT104I TTCGAA 1 cut(s) 703
BspT107I GGYRCC 1 cut(s) 487
BspTNI GGTCTC 1 cut(s) 37
BssMI GATC 4 cut(s) 418, 654, 753, 835
BssSI CACGAG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 293
Bst2UI CCWGG 2 cut(s) 451, 564
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 703
BstC8I GCNNGC 2 cut(s) 136, 628
BstDEI CTNAG 3 cut(s) 483, 494, 658
BstENI CCTNNNNNAGG 2 cut(s) 115, 607
BstFNI CGCG 2 cut(s) 740, 742
BstHHI GCGC 3 cut(s) 250, 284, 742
BstKTI GATC 4 cut(s) 421, 657, 756, 838
BstMAI GTCTC 2 cut(s) 37, 587
BstMBI GATC 4 cut(s) 418, 654, 753, 835
BstMWI GCNNNNNNNGC 2 cut(s) 386, 737
BstNI CCWGG 2 cut(s) 451, 564
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 3 cut(s) 70, 449, 562
BstSFI CTRYAG 4 cut(s) 115, 132, 607, 624
BstSLI GKGCMC 1 cut(s) 813
BstUI CGCG 2 cut(s) 740, 742
BstV1I GCAGC 2 cut(s) 354, 718
BstX2I RGATCY 1 cut(s) 654
BstYI RGATCY 1 cut(s) 654
BsuRI GGCC 1 cut(s) 538
BtsIMutI CAGTG 3 cut(s) 81, 389, 573
Cac8I GCNNGC 2 cut(s) 136, 628
CaiI CAGNNNCTG 1 cut(s) 861
CfoI GCGC 3 cut(s) 250, 284, 742
Csp6I GTAC 3 cut(s) 94, 184, 676
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 4 cut(s) 223, 251, 715, 767
CviQI GTAC 3 cut(s) 94, 184, 676
DdeI CTNAG 3 cut(s) 483, 494, 658
DpnI GATC 4 cut(s) 420, 656, 755, 837
DpnII GATC 4 cut(s) 418, 654, 753, 835
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 292
Eco147I AGGCCT 1 cut(s) 538
Eco24I GRGCYC 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 292
Eco57I CTGAAG 2 cut(s) 179, 671
EcoICRI GAGCTC 1 cut(s) 292
EcoNI CCTNNNNNAGG 2 cut(s) 115, 607
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 449, 562
EcoT38I GRGCYC 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 4 cut(s) 226, 254, 718, 770
FaiI YATR 8 cut(s) 117, 224, 252, 340, 378, 636, 716, 768
FalI AAGNNNNNCTT 4 cut(s) 180, 212, 672, 704
FaqI GGGAC 2 cut(s) 185, 677
FatI CATG 4 cut(s) 222, 250, 714, 766
FbaI TGATCA 1 cut(s) 835
Fnu4HI GCNGC 2 cut(s) 368, 732
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 2 cut(s) 368, 732
FspI TGCGCA 1 cut(s) 249
GlaI GCGC 3 cut(s) 249, 283, 741
GluI GCNGC 2 cut(s) 368, 732
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 1 cut(s) 538
HapII CCGG 2 cut(s) 72, 828
HhaI GCGC 3 cut(s) 250, 284, 742
Hin1II CATG 4 cut(s) 226, 254, 718, 770
Hin6I GCGC 3 cut(s) 248, 282, 740
HinP1I GCGC 3 cut(s) 248, 282, 740
HindIII AAGCTT 4 cut(s) 194, 431, 438, 686
HpaII CCGG 2 cut(s) 72, 828
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 811
Hpy188I TCNGA 2 cut(s) 495, 863
Hpy188III TCNNGA 4 cut(s) 157, 295, 649, 828
Hpy8I GTNNAC 1 cut(s) 811
HpyAV CCTTC 9 cut(s) 57, 121, 213, 218, 229, 549, 613, 705, 721
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 8 cut(s) 134, 323, 370, 389, 626, 734, 774, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 737
HpyF3I CTNAG 3 cut(s) 483, 494, 658
HpySE526I ACGT 1 cut(s) 580
Hsp92II CATG 4 cut(s) 226, 254, 718, 770
HspAI GCGC 3 cut(s) 248, 282, 740
Kpn2I TCCGGA 1 cut(s) 827
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 4 cut(s) 418, 654, 753, 835
LmnI GCTCC 2 cut(s) 452, 613
Lsp1109I GCAGC 2 cut(s) 354, 718
LweI GCATC 2 cut(s) 133, 625
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 2 cut(s) 74, 566
MalI GATC 4 cut(s) 420, 656, 755, 837
MboI GATC 4 cut(s) 418, 654, 753, 835
MboII GAAGA 7 cut(s) 46, 50, 59, 172, 538, 551, 664
MflI RGATCY 1 cut(s) 654
MhlI GDGCHC 2 cut(s) 294, 813
MluCI AATT 8 cut(s) 99, 328, 362, 384, 394, 591, 638, 814
MmeI TCCRAC 3 cut(s) 250, 339, 742
MnlI CCTC 4 cut(s) 485, 489, 501, 528
MroI TCCGGA 1 cut(s) 827
MseI TTAA 2 cut(s) 818, 852
MspI CCGG 2 cut(s) 72, 828
MspR9I CCNGG 3 cut(s) 72, 451, 564
Mva1269I GAATGC 1 cut(s) 734
MvaI CCWGG 2 cut(s) 451, 564
MvnI CGCG 2 cut(s) 740, 742
MwoI GCNNNNNNNGC 2 cut(s) 386, 737
NciI CCSGG 1 cut(s) 72
NdeII GATC 4 cut(s) 418, 654, 753, 835
NlaIII CATG 4 cut(s) 226, 254, 718, 770
NlaIV GGNNCC 2 cut(s) 175, 489
NsbI TGCGCA 1 cut(s) 249
NspI RCATGY 1 cut(s) 770
NspV TTCGAA 1 cut(s) 703
PceI AGGCCT 1 cut(s) 538
PciI ACATGT 1 cut(s) 766
PctI GAATGC 1 cut(s) 734
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 2 cut(s) 369, 733
PscI ACATGT 1 cut(s) 766
Psp124BI GAGCTC 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 449, 562
PspGI CCWGG 2 cut(s) 449, 562
PspN4I GGNNCC 2 cut(s) 175, 489
PstI CTGCAG 2 cut(s) 136, 628
PstNI CAGNNNCTG 1 cut(s) 861
PsuI RGATCY 1 cut(s) 654
RsaI GTAC 3 cut(s) 95, 185, 677
RsaNI GTAC 3 cut(s) 94, 184, 676
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 2 cut(s) 818, 852
SatI GCNGC 2 cut(s) 368, 732
Sau3AI GATC 4 cut(s) 418, 654, 753, 835
ScrFI CCNGG 3 cut(s) 72, 451, 564
SduI GDGCHC 2 cut(s) 294, 813
SfaNI GCATC 2 cut(s) 133, 625
SfcI CTRYAG 4 cut(s) 115, 132, 607, 624
SfuI TTCGAA 1 cut(s) 703
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 8 cut(s) 99, 328, 362, 384, 394, 591, 638, 814
SseBI AGGCCT 1 cut(s) 538
SstI GAGCTC 1 cut(s) 294
StuI AGGCCT 1 cut(s) 538
StyD4I CCNGG 3 cut(s) 70, 449, 562
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 1 cut(s) 583
TaqI TCGA 3 cut(s) 288, 703, 780
TasI AATT 8 cut(s) 99, 328, 362, 384, 394, 591, 638, 814
TatI WGTACW 1 cut(s) 93
Tru1I TTAA 2 cut(s) 818, 852
Tru9I TTAA 2 cut(s) 818, 852
TscAI CASTG 3 cut(s) 88, 396, 580
TseI GCWGC 2 cut(s) 367, 731
TspDTI ATGAA 4 cut(s) 211, 531, 651, 703
TspRI CASTG 3 cut(s) 88, 396, 580
Van91I CCANNNNNTGG 1 cut(s) 265
VneI GTGCAC 1 cut(s) 809
XagI CCTNNNNNAGG 2 cut(s) 115, 607
XapI RAATTY 3 cut(s) 328, 394, 638
XceI RCATGY 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.