FvH4_4g20070

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000235
Physical Location & Seq
Forward (+)
23494058 .. 23494847
790 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20070.t1

Sequence Viewer

Length: 471 bp
ATGCATTTCACAATTAATATTTTTGACAAGAACTGTGTCGAAAGAGTGAATATCACCAACCTCAGAACACGTGAAGCATCCACCTTTCCAGACAGTTCTGAAAGGCCTTTGGCAAGACCACCAACAGGTGAAGCTATAGGTAATCATCGATCTGAGTTGGCTGCGGAAGCTGCCAAGGGACATAACTTAAGTGAACACCTTCCGAGACTTGCAGCTGCTGCAGCTTTCAAATCCAAATTTCCCTGCTTTACAAAAGTTCTTAAAAAATCGAGGATGGTGGCAATCCCCACACAATTCTATAAGGAGGTGTTACCTTCAAGAAATTATGATAAAATTTTCCTGGTGACTTCAAAGGGAAAATTCACAGTGACGCTTTATACTTGCGCTGATACAATGATGTTGTCTGGAGGGTGGTTTTCCTTCAGAAATTTCTCATCAAGAATACGTGCTATCATGGGGAAATACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

157

Amino Acids

17.6

Weight (kDa)

10.02

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 164
AcsI RAATTY 4 cut(s) 236, 333, 359, 427
AcuI CTGAAG 1 cut(s) 406
AcvI CACGTG 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 125
AflII CTTAAG 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 3 cut(s) 229, 318, 351
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 5 cut(s) 134, 170, 215, 224, 468
AluI AGCT 5 cut(s) 134, 170, 215, 224, 468
Alw26I GTCTC 1 cut(s) 199
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 6 cut(s) 161, 170, 212, 215, 218, 221
ApoI RAATTY 4 cut(s) 236, 333, 359, 427
AseI ATTAAT 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 386
AsuHPI GGTGA 3 cut(s) 46, 140, 355
BbrPI CACGTG 1 cut(s) 71
BbvI GCAGC 6 cut(s) 148, 157, 202, 205, 224, 233
BccI CCATC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 469
BfmI CTRYAG 2 cut(s) 135, 219
BfrI CTTAAG 1 cut(s) 187
BisI GCNGC 6 cut(s) 162, 171, 213, 216, 219, 222
BlsI GCNGC 6 cut(s) 163, 172, 214, 217, 220, 223
Bme1390I CCNGG 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 148
BsaAI YACGTR 2 cut(s) 71, 446
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 341
BseCI ATCGAT 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 2 cut(s) 77, 279
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 2 cut(s) 76, 144
BseXI GCAGC 6 cut(s) 148, 157, 202, 205, 224, 233
BshFI GGCC 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 148
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 149
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 2 cut(s) 75, 145
BspDI ATCGAT 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 35, 95, 367
BstAFI CTTAAG 1 cut(s) 187
BstAPI GCANNNNNTGC 1 cut(s) 218
BstBAI YACGTR 2 cut(s) 71, 446
BstDEI CTNAG 2 cut(s) 62, 153
BstF5I GGATG 2 cut(s) 77, 279
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 4 cut(s) 167, 170, 218, 221
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 2 cut(s) 135, 219
BstV1I GCAGC 6 cut(s) 148, 157, 202, 205, 224, 233
Bsu15I ATCGAT 1 cut(s) 148
BsuRI GGCC 1 cut(s) 106
BsuTUI ATCGAT 1 cut(s) 148
BtsCI GGATG 2 cut(s) 77, 279
BtsIMutI CAGTG 1 cut(s) 372
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 386
ClaI ATCGAT 1 cut(s) 148
CseI GACGC 1 cut(s) 379
CviAII CATG 1 cut(s) 454
CviJI RGCY 7 cut(s) 106, 134, 161, 170, 215, 224, 468
CviKI_1 RGCY 7 cut(s) 106, 134, 161, 170, 215, 224, 468
DdeI CTNAG 2 cut(s) 62, 153
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 406
Eco72I CACGTG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 457
FaiI YATR 6 cut(s) 137, 183, 300, 327, 378, 455
FaqI GGGAC 1 cut(s) 192
FatI CATG 1 cut(s) 453
Fnu4HI GCNGC 6 cut(s) 162, 171, 213, 216, 219, 222
FokI GGATG 2 cut(s) 64, 286
Fsp4HI GCNGC 6 cut(s) 162, 171, 213, 216, 219, 222
FspBI CTAG 1 cut(s) 469
GlaI GCGC 1 cut(s) 385
GluI GCNGC 6 cut(s) 162, 171, 213, 216, 219, 222
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 1 cut(s) 106
HgaI GACGC 1 cut(s) 379
HhaI GCGC 1 cut(s) 386
Hin1II CATG 1 cut(s) 457
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HphI GGTGA 3 cut(s) 46, 140, 355
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 5 cut(s) 65, 100, 154, 204, 425
Hpy188III TCNNGA 4 cut(s) 89, 318, 405, 438
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 3 cut(s) 209, 324, 430
HpyCH4III ACNGT 3 cut(s) 35, 95, 367
HpyCH4IV ACGT 2 cut(s) 70, 445
HpyCH4V TGCA 3 cut(s) 4, 212, 221
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 170, 218, 221
HpyF3I CTNAG 2 cut(s) 62, 153
HpySE526I ACGT 2 cut(s) 70, 445
Hsp92II CATG 1 cut(s) 457
HspAI GCGC 1 cut(s) 384
Kzo9I GATC 1 cut(s) 149
LpnPI CCDG 6 cut(s) 102, 111, 256, 326, 353, 390
Lsp1109I GCAGC 6 cut(s) 148, 157, 202, 205, 224, 233
LweI GCATC 1 cut(s) 86
MaeI CTAG 1 cut(s) 469
MaeII ACGT 2 cut(s) 70, 445
MaeIII GTNAC 3 cut(s) 309, 343, 367
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MluCI AATT 7 cut(s) 12, 236, 293, 322, 333, 359, 427
MnlI CCTC 4 cut(s) 71, 264, 298, 401
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 3 cut(s) 15, 188, 261
MspA1I CMGCKG 1 cut(s) 215
MspCI CTTAAG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 4 cut(s) 167, 170, 218, 221
NdeII GATC 1 cut(s) 149
NlaIII CATG 1 cut(s) 457
NmuCI GTSAC 2 cut(s) 343, 367
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 198
PkrI GCNGC 6 cut(s) 163, 172, 214, 217, 220, 223
PmaCI CACGTG 1 cut(s) 71
PmlI CACGTG 1 cut(s) 71
Ppu21I YACGTR 2 cut(s) 71, 446
PshBI ATTAAT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 339
PspCI CACGTG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 339
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 215
SaqAI TTAA 3 cut(s) 15, 188, 261
SatI GCNGC 6 cut(s) 162, 171, 213, 216, 219, 222
Sau3AI GATC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 341
SfaNI GCATC 1 cut(s) 86
SfcI CTRYAG 2 cut(s) 135, 219
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 7 cut(s) 12, 236, 293, 322, 333, 359, 427
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 1 cut(s) 164
SspI AATATT 1 cut(s) 19
SspMI CTAG 1 cut(s) 469
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 3 cut(s) 35, 95, 367
TaiI ACGT 2 cut(s) 73, 448
TaqI TCGA 3 cut(s) 39, 148, 269
TasI AATT 7 cut(s) 12, 236, 293, 322, 333, 359, 427
Tru1I TTAA 3 cut(s) 15, 188, 261
Tru9I TTAA 3 cut(s) 15, 188, 261
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 2 cut(s) 343, 367
TseI GCWGC 6 cut(s) 161, 170, 212, 215, 218, 221
Tsp45I GTSAC 2 cut(s) 343, 367
TspRI CASTG 1 cut(s) 372
Vha464I CTTAAG 1 cut(s) 187
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 4 cut(s) 236, 333, 359, 427
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 469
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.