Rorug05G0587300

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000235
Physical Location & Seq
Forward (+)
78514693 .. 78517171
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0587300.1

Sequence Viewer

Length: 390 bp
ATGAGGTTTACAGCTGGGGTTGGCATCCTCTTCATCAAAACCATGAAAACTTGTCAGGTTTGGGTGTGTGGGCGTTTGGCAGCTCCTCCCCTGGGCTTCAGACGAGTCCCAAGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGGAGCCAAGGCCCCCACTCAGAGATCTGCAATTACTCCTTATAGAATTGTTCTTGGTAATATAAAAGACAAGCTTATGAAGACACTAAGACGTTTGGAGCTTCTTCTAGAGGATCTTCCTTGCGATTTTAATCTATCGGAGTATTATGACACATCAGATGAACTTATAGAACCACTGATGACATACCATGACCCTCTCTGCGCAGACACAAATGTGCCACATCTGCATGCATACAGACTTCTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

129

Amino Acids

14.8

Weight (kDa)

8.73

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 343
AclWI GGATC 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 92
AjnI CCWGG 1 cut(s) 90
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 5 cut(s) 14, 83, 137, 214, 241
AluI AGCT 5 cut(s) 14, 83, 137, 214, 241
AlwI GGATC 1 cut(s) 261
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 2 cut(s) 121, 151
AvaII GGWCC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 92
BfaI CTAG 1 cut(s) 248
BglII AGATCT 1 cut(s) 164
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 151
BmiI GGNNCC 2 cut(s) 145, 153
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 90, 91, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 3 cut(s) 90, 91, 147
BseGI GGATG 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 14
BshFI GGCC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 164, 253
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 145, 153
BspPI GGATC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 90, 91, 147
BssMI GATC 2 cut(s) 164, 253
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 159, 227
BstF5I GGATG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 2 cut(s) 167, 256
BstMBI GATC 2 cut(s) 164, 253
BstMWI GCNNNNNNNGC 2 cut(s) 143, 364
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 2 cut(s) 164, 253
BstYI RGATCY 2 cut(s) 164, 253
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 369
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 121, 151
CviAII CATG 3 cut(s) 43, 329, 368
CviJI RGCY 8 cut(s) 14, 83, 96, 137, 146, 152, 214, 241
CviKI_1 RGCY 8 cut(s) 14, 83, 96, 137, 146, 152, 214, 241
DdeI CTNAG 2 cut(s) 159, 227
DpnI GATC 2 cut(s) 166, 255
DpnII GATC 2 cut(s) 164, 253
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 46, 332, 371
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 92
FatI CATG 3 cut(s) 42, 328, 367
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 248
FspI TGCGCA 1 cut(s) 343
GlaI GCGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 1 cut(s) 152
HhaI GCGC 1 cut(s) 344
Hin1II CATG 3 cut(s) 46, 332, 371
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HindIII AAGCTT 2 cut(s) 135, 212
HinfI GANTC 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 4 cut(s) 101, 162, 280, 298
Hpy188III TCNNGA 2 cut(s) 131, 248
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 3 cut(s) 170, 367, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 364
HpyF3I CTNAG 2 cut(s) 159, 227
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 3 cut(s) 46, 332, 371
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 2 cut(s) 164, 253
LmnI GCTCC 3 cut(s) 88, 143, 238
LpnPI CCDG 5 cut(s) 41, 77, 104, 137, 144
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 232
MalI GATC 2 cut(s) 166, 255
MboI GATC 2 cut(s) 164, 253
MboII GAAGA 4 cut(s) 22, 232, 236, 248
MflI RGATCY 2 cut(s) 164, 253
MluCI AATT 2 cut(s) 171, 186
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 4 cut(s) 38, 96, 244, 345
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 353, 366
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 143, 364
NdeII GATC 2 cut(s) 164, 253
NlaIII CATG 3 cut(s) 46, 332, 371
NlaIV GGNNCC 2 cut(s) 145, 153
NsbI TGCGCA 1 cut(s) 343
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 371
OliI CACNNNNGTG 1 cut(s) 353
PaeI GCATGC 1 cut(s) 371
PasI CCCWGGG 1 cut(s) 91
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 145, 153
PspPI GGNCC 2 cut(s) 121, 151
PsuI RGATCY 2 cut(s) 164, 253
PvuII CAGCTG 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 353, 366
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 164, 253
Sau96I GGNCC 2 cut(s) 121, 151
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 92
SetI ASST 9 cut(s) 8, 16, 60, 85, 123, 139, 216, 235, 243
SfaNI GCATC 1 cut(s) 33
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 353, 366
SphI GCATGC 1 cut(s) 371
Sse9I AATT 2 cut(s) 171, 186
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 1 cut(s) 235
TasI AATT 2 cut(s) 171, 186
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 321
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 22, 59, 233, 315
TspRI CASTG 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 121
XbaI TCTAGA 1 cut(s) 247
XceI RCATGY 1 cut(s) 371
XspI CTAG 1 cut(s) 248
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.