Rh6CG097100

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
10716250 .. 10718779
2530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG097100.1

Sequence Viewer

Length: 612 bp
ATGGATTCTTCAAATAGTTCATGGACTGTTGATGTGAGCCAAACAGAAGGGGAGATATATTTCAAGAATGGATGGCAGAAGTTTGTAAGAGATAACTCCTTAGGTAACTTTGAATTCTTAGTATTTAGGTATGAGAGCGATATGCAATTTAGCATTGAGATCTTTGACAGAAATGCGAGTAAGAGGATCACGTTTCCAGATGTCAGAACACACAGACGAGGTATACACACTCAAAGTTGTCAATCCAACAAACTCAAAGAGGTTAAAGAAGAGGAGGAAGATTACCAAGATAACAAAGAAGAAGAAGCTGCCACATTGCACAAAACTTTTACAAGCATTGTTGGACAAAACTTTTATAATTTGGCAGTTCCTACAGACTTTTCTGTGAAGTACTTTCCTCTGGGATACTACACCATTGTCCTGAAAAATTCAGAGGCAAGAGAATGGGAAGTAAGCGTTGTGCCTAATGGGAAGGATGCTTCCTGTAATACGGTTAAACTTTCTGCAGGATGGGCTGCTTTTAGACGTGACAACCAAATCAACTCCGGAGATACTTGCACATTTGAGCTTGTGGAAAGCAAAACAATGTTGGTTCACATTGATCCTAAGTGA

Protein Analysis

203

Amino Acids

23.46

Weight (kDa)

5.2

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 1 - 58 4.1e-11 B3 DNA binding domain
B3 PF02362 120 - 200 1.7e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AccI GTMKAC 1 cut(s) 223
AccIII TCCGGA 1 cut(s) 545
AclWI GGATC 2 cut(s) 194, 596
AcsI RAATTY 2 cut(s) 113, 427
AfaI GTAC 1 cut(s) 392
AgsI TTSAA 3 cut(s) 12, 64, 113
AjiI CACGTC 1 cut(s) 527
AluBI AGCT 2 cut(s) 308, 568
AluI AGCT 2 cut(s) 308, 568
AlwI GGATC 2 cut(s) 194, 596
Aor13HI TCCGGA 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 308, 515
ApoI RAATTY 2 cut(s) 113, 427
AxyI CCTNAGG 1 cut(s) 100
BbvI GCAGC 2 cut(s) 295, 502
BccI CCATC 2 cut(s) 66, 504
BciVI GTATCC 1 cut(s) 398
BfmI CTRYAG 2 cut(s) 372, 504
BfuI GTATCC 1 cut(s) 398
BglII AGATCT 1 cut(s) 159
BisI GCNGC 2 cut(s) 309, 516
BlsI GCNGC 2 cut(s) 310, 517
BmcAI AGTACT 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 527
BmsI GCATC 1 cut(s) 466
BsaWI WCCGGW 1 cut(s) 545
Bse21I CCTNAGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 314
BseAI TCCGGA 1 cut(s) 545
BseGI GGATG 3 cut(s) 77, 481, 515
BseMI GCAATG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 2 cut(s) 295, 502
BsiSI CCGG 1 cut(s) 546
Bsp13I TCCGGA 1 cut(s) 545
Bsp143I GATC 3 cut(s) 159, 186, 601
BspEI TCCGGA 1 cut(s) 545
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 2 cut(s) 194, 596
BsrDI GCAATG 1 cut(s) 314
BssMI GATC 3 cut(s) 159, 186, 601
BssNAI GTATAC 1 cut(s) 224
Bst1107I GTATAC 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 28, 493
Bst6I CTCTTC 1 cut(s) 264
BstDEI CTNAG 3 cut(s) 100, 118, 606
BstF5I GGATG 3 cut(s) 77, 481, 515
BstKTI GATC 3 cut(s) 162, 189, 604
BstMBI GATC 3 cut(s) 159, 186, 601
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstSFI CTRYAG 2 cut(s) 372, 504
BstV1I GCAGC 2 cut(s) 295, 502
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BstZ17I GTATAC 1 cut(s) 224
Bsu36I CCTNAGG 1 cut(s) 100
BsuI GTATCC 1 cut(s) 398
BtrI CACGTC 1 cut(s) 527
BtsCI GGATG 3 cut(s) 77, 481, 515
Csp6I GTAC 1 cut(s) 391
CviAII CATG 1 cut(s) 21
CviJI RGCY 4 cut(s) 39, 308, 515, 568
CviKI_1 RGCY 4 cut(s) 39, 308, 515, 568
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 3 cut(s) 100, 118, 606
DpnI GATC 3 cut(s) 161, 188, 603
DpnII GATC 3 cut(s) 159, 186, 601
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco81I CCTNAGG 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 113
FaeI CATG 1 cut(s) 24
FaiI YATR 6 cut(s) 22, 58, 132, 143, 224, 357
FatI CATG 1 cut(s) 20
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 309, 516
FokI GGATG 3 cut(s) 84, 488, 522
Fsp4HI GCNGC 2 cut(s) 309, 516
GluI GCNGC 2 cut(s) 309, 516
HapII CCGG 1 cut(s) 546
Hin1II CATG 1 cut(s) 24
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 546
Hpy166II GTNNAC 2 cut(s) 224, 595
Hpy188I TCNGA 2 cut(s) 206, 433
Hpy188III TCNNGA 4 cut(s) 64, 197, 421, 546
Hpy8I GTNNAC 2 cut(s) 224, 595
HpyAV CCTTC 2 cut(s) 41, 466
HpyCH4III ACNGT 2 cut(s) 28, 493
HpyCH4IV ACGT 2 cut(s) 191, 526
HpyCH4V TGCA 4 cut(s) 145, 319, 506, 558
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 3 cut(s) 100, 118, 606
HpySE526I ACGT 2 cut(s) 191, 526
Hsp92II CATG 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 545
Kzo9I GATC 3 cut(s) 159, 186, 601
LpnPI CCDG 6 cut(s) 210, 386, 434, 492, 496, 559
Lsp1109I GCAGC 2 cut(s) 295, 502
LweI GCATC 1 cut(s) 466
MaeII ACGT 2 cut(s) 191, 526
MaeIII GTNAC 2 cut(s) 104, 527
MalI GATC 3 cut(s) 161, 188, 603
MboI GATC 3 cut(s) 159, 186, 601
MboII GAAGA 4 cut(s) 281, 290, 311, 314
MflI RGATCY 1 cut(s) 159
MluCI AATT 4 cut(s) 113, 146, 358, 427
MmeI TCCRAC 2 cut(s) 270, 322
MnlI CCTC 7 cut(s) 177, 212, 253, 265, 268, 408, 427
MroI TCCGGA 1 cut(s) 545
MseI TTAA 2 cut(s) 264, 495
MspI CCGG 1 cut(s) 546
MwoI GCNNNNNNNGC 1 cut(s) 512
NdeII GATC 3 cut(s) 159, 186, 601
NlaIII CATG 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 310, 517
PsiI TTATAA 1 cut(s) 357
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 159
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SaqAI TTAA 2 cut(s) 264, 495
SatI GCNGC 2 cut(s) 309, 516
Sau3AI GATC 3 cut(s) 159, 186, 601
ScaI AGTACT 1 cut(s) 392
SetI ASST 8 cut(s) 106, 131, 194, 223, 264, 310, 529, 570
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 2 cut(s) 372, 504
Sse9I AATT 4 cut(s) 113, 146, 358, 427
TaaI ACNGT 2 cut(s) 28, 493
TaiI ACGT 2 cut(s) 194, 529
TasI AATT 4 cut(s) 113, 146, 358, 427
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 264, 495
Tru9I TTAA 2 cut(s) 264, 495
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 2 cut(s) 308, 515
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 1 cut(s) 9
XapI RAATTY 2 cut(s) 113, 427
XmiI GTMKAC 1 cut(s) 223
ZrmI AGTACT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.