RchiOBHm_Chr6g0259241

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000235
Physical Location & Seq
Reverse (-)
14521478 .. 14523922
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23243

Sequence Viewer

Length: 783 bp
ATGGTGAGAAAGAATGGTGTCAAGGAAAAGAGGCCTTCCTTCTTCAAGGTTATTCTTCCACGTTACTCCACTGAACGTCTCATGATTCCACCGCAGTTCTTGAAGCATCTTGGGAAGGATCTATGTAGCAAGGCAACTTTGAGCTTGAACATGTCTTCACAGTGTTCATGGAATGTGAAAGTGACTAAAACAAAGAAAGATGTGTATTTCAAGGATGGGTGGCAGGAGTTTTTAAACAATAACTCAGTGGATGAAGGCGACTTCCTAGTGTTCACCTATGAAGGGAAAATGCATTTCAGCATAGCGGTTTTCGACAGGAGTTGTTGTGGAAGAGTTGATTTTCCTAATGAAACATTCAAAGAATCCATAGTTGCTATGACTACTAAAAGGCCTTGTGGTAGACCAAGAAAAGATAACTCAGATAACACAGCTAAGGAATCTGCTATATCTTTCAAATCCAAGTTTCCTCATTACAAAAGTACTATTAAGAAAACTTATTGTGTGTACTCAATTCCCACCACCTTCTACAGGGAGCATCTTGCTGCAGGCAAATATGAATTTGCTTTCCTGAAGATCTCAGGGGGAAACAAATGGTACAAAGTGAAGCTTGTCCCTTCCATTCGAACAGCCTTCATGTCTAAAGGGTGGGCTGCGTTCGCGCGTGATAACCAGATCAAGGTTGGACATGTTTGCATTTTCGAGCTTGTGAAAGAGAACAAAATGGTGGTTCACAATTTAACATTCTCCGGAAATGATCAAGTTCAAGCTATTAACAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

260

Amino Acids

29.89

Weight (kDa)

9.69

Isoelectric Point (pI)

28.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 14 - 106 3.5e-17 B3 DNA binding domain
B3 PF02362 167 - 243 1.3e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 400
AccII CGCG 2 cut(s) 659, 661
AccIII TCCGGA 1 cut(s) 746
AciI CCGC 2 cut(s) 92, 305
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 557
AcuI CTGAAG 1 cut(s) 590
AfaI GTAC 3 cut(s) 481, 506, 596
AfiI CCNNNNNNNGG 3 cut(s) 282, 528, 676
AflIII ACRYGT 2 cut(s) 150, 685
AgsI TTSAA 7 cut(s) 46, 103, 148, 211, 358, 454, 764
AluBI AGCT 5 cut(s) 144, 431, 607, 703, 767
AluI AGCT 5 cut(s) 144, 431, 607, 703, 767
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 780
Aor13HI TCCGGA 1 cut(s) 746
AoxI GGCC 2 cut(s) 32, 389
ApeKI GCWGC 2 cut(s) 542, 650
ApoI RAATTY 1 cut(s) 557
AspLEI GCGC 1 cut(s) 661
AsuHPI GGTGA 2 cut(s) 16, 265
AsuII TTCGAA 1 cut(s) 622
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 529, 637
BccI CCATC 1 cut(s) 209
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 2 cut(s) 526, 543
BglII AGATCT 1 cut(s) 573
BisI GCNGC 2 cut(s) 543, 651
BlsI GCNGC 2 cut(s) 544, 652
BmcAI AGTACT 1 cut(s) 481
BmsI GCATC 2 cut(s) 115, 544
BpiI GAAGAC 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 622
BsaWI WCCGGW 1 cut(s) 746
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 528, 676
BseAI TCCGGA 1 cut(s) 746
BseGI GGATG 2 cut(s) 220, 256
BseLI CCNNNNNNNGG 3 cut(s) 282, 528, 676
BseMII CTCAG 3 cut(s) 258, 432, 591
BseXI GCAGC 2 cut(s) 529, 637
Bsh1236I CGCG 2 cut(s) 659, 661
BshFI GGCC 2 cut(s) 34, 391
BsiSI CCGG 1 cut(s) 747
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 3 cut(s) 282, 528, 676
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 596
BsnI GGCC 2 cut(s) 34, 391
Bsp119I TTCGAA 1 cut(s) 622
Bsp13I TCCGGA 1 cut(s) 746
Bsp143I GATC 4 cut(s) 118, 573, 672, 754
BspACI CCGC 2 cut(s) 92, 305
BspANI GGCC 2 cut(s) 34, 391
BspCNI CTCAG 3 cut(s) 257, 431, 590
BspEI TCCGGA 1 cut(s) 746
BspFNI CGCG 2 cut(s) 659, 661
BspHI TCATGA 1 cut(s) 81
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 622
BssMI GATC 4 cut(s) 118, 573, 672, 754
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 622
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 4 cut(s) 244, 418, 432, 577
BstENI CCTNNNNNAGG 1 cut(s) 526
BstF5I GGATG 2 cut(s) 220, 256
BstFNI CGCG 2 cut(s) 659, 661
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 4 cut(s) 121, 576, 675, 757
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 4 cut(s) 118, 573, 672, 754
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNSI RCATGY 2 cut(s) 154, 689
BstSFI CTRYAG 2 cut(s) 526, 543
BstUI CGCG 2 cut(s) 659, 661
BstV1I GCAGC 2 cut(s) 529, 637
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 2 cut(s) 118, 573
BstYI RGATCY 2 cut(s) 118, 573
BsuRI GGCC 2 cut(s) 34, 391
BtsCI GGATG 2 cut(s) 220, 256
BtsIMutI CAGTG 3 cut(s) 69, 167, 252
Cac8I GCNNGC 1 cut(s) 547
CaiI CAGNNNCTG 1 cut(s) 780
CciI TCATGA 1 cut(s) 81
CfoI GCGC 1 cut(s) 661
Csp6I GTAC 3 cut(s) 480, 505, 595
CviAII CATG 5 cut(s) 82, 151, 168, 634, 686
CviJI RGCY 9 cut(s) 34, 144, 391, 431, 607, 629, 650, 703, 767
CviKI_1 RGCY 9 cut(s) 34, 144, 391, 431, 607, 629, 650, 703, 767
CviQI GTAC 3 cut(s) 480, 505, 595
DdeI CTNAG 4 cut(s) 244, 418, 432, 577
DpnI GATC 4 cut(s) 120, 575, 674, 756
DpnII GATC 4 cut(s) 118, 573, 672, 754
DraI TTTAAA 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Eco147I AGGCCT 2 cut(s) 34, 391
Eco57I CTGAAG 1 cut(s) 590
EcoNI CCTNNNNNAGG 1 cut(s) 526
EcoT22I ATGCAT 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 5 cut(s) 85, 154, 171, 637, 689
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 1 cut(s) 596
FatI CATG 5 cut(s) 81, 150, 167, 633, 685
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 2 cut(s) 543, 651
FokI GGATG 2 cut(s) 227, 263
Fsp4HI GCNGC 2 cut(s) 543, 651
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 660
GluI GCNGC 2 cut(s) 543, 651
HaeIII GGCC 2 cut(s) 34, 391
HapII CCGG 1 cut(s) 747
HhaI GCGC 1 cut(s) 661
Hin1II CATG 5 cut(s) 85, 154, 171, 637, 689
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 3 cut(s) 85, 362, 437
HpaII CCGG 1 cut(s) 747
HphI GGTGA 2 cut(s) 16, 265
Hpy166II GTNNAC 4 cut(s) 273, 401, 505, 730
Hpy188I TCNGA 2 cut(s) 421, 782
Hpy188III TCNNGA 4 cut(s) 82, 100, 568, 747
Hpy8I GTNNAC 4 cut(s) 273, 401, 505, 730
HpyAV CCTTC 8 cut(s) 45, 49, 109, 248, 275, 532, 624, 640
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 2 cut(s) 61, 76
HpyCH4V TGCA 3 cut(s) 292, 545, 693
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 4 cut(s) 244, 418, 432, 577
HpySE526I ACGT 2 cut(s) 61, 76
Hsp92II CATG 5 cut(s) 85, 154, 171, 637, 689
HspAI GCGC 1 cut(s) 659
Kpn2I TCCGGA 1 cut(s) 746
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 4 cut(s) 118, 573, 672, 754
LmnI GCTCC 1 cut(s) 532
LpnPI CCDG 8 cut(s) 209, 301, 514, 531, 564, 581, 683, 760
Lsp1109I GCAGC 2 cut(s) 529, 637
LweI GCATC 2 cut(s) 115, 544
MaeI CTAG 1 cut(s) 266
MaeII ACGT 2 cut(s) 61, 76
MaeIII GTNAC 2 cut(s) 62, 181
MalI GATC 4 cut(s) 120, 575, 674, 756
MboI GATC 4 cut(s) 118, 573, 672, 754
MboII GAAGA 5 cut(s) 34, 47, 147, 342, 583
MflI RGATCY 2 cut(s) 118, 573
MluCI AATT 3 cut(s) 510, 557, 733
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 2 cut(s) 24, 477
Mph1103I ATGCAT 1 cut(s) 294
MroI TCCGGA 1 cut(s) 746
MseI TTAA 4 cut(s) 233, 486, 737, 771
MspI CCGG 1 cut(s) 747
MvnI CGCG 2 cut(s) 659, 661
MwoI GCNNNNNNNGC 1 cut(s) 656
NdeII GATC 4 cut(s) 118, 573, 672, 754
NlaIII CATG 5 cut(s) 85, 154, 171, 637, 689
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 294
NspI RCATGY 2 cut(s) 154, 689
NspV TTCGAA 1 cut(s) 622
PagI TCATGA 1 cut(s) 81
PceI AGGCCT 2 cut(s) 34, 391
PciI ACATGT 2 cut(s) 150, 685
PfeI GAWTC 3 cut(s) 85, 362, 437
PkrI GCNGC 2 cut(s) 544, 652
PscI ACATGT 2 cut(s) 150, 685
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 780
PsuI RGATCY 2 cut(s) 118, 573
RsaI GTAC 3 cut(s) 481, 506, 596
RsaNI GTAC 3 cut(s) 480, 505, 595
SaqAI TTAA 4 cut(s) 233, 486, 737, 771
SatI GCNGC 2 cut(s) 543, 651
Sau3AI GATC 4 cut(s) 118, 573, 672, 754
ScaI AGTACT 1 cut(s) 481
SfaNI GCATC 2 cut(s) 115, 544
SfcI CTRYAG 2 cut(s) 526, 543
SfuI TTCGAA 1 cut(s) 622
Sse9I AATT 3 cut(s) 510, 557, 733
SseBI AGGCCT 2 cut(s) 34, 391
SsiI CCGC 2 cut(s) 92, 305
SspMI CTAG 1 cut(s) 266
StuI AGGCCT 2 cut(s) 34, 391
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 2 cut(s) 64, 79
TaqI TCGA 3 cut(s) 312, 622, 699
TasI AATT 3 cut(s) 510, 557, 733
TatI WGTACW 2 cut(s) 479, 504
TfiI GAWTC 3 cut(s) 85, 362, 437
Tru1I TTAA 4 cut(s) 233, 486, 737, 771
Tru9I TTAA 4 cut(s) 233, 486, 737, 771
TscAI CASTG 3 cut(s) 76, 167, 252
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 542, 650
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 6 cut(s) 156, 267, 294, 363, 570, 622
TspRI CASTG 3 cut(s) 76, 167, 252
XagI CCTNNNNNAGG 1 cut(s) 526
XapI RAATTY 1 cut(s) 557
XceI RCATGY 2 cut(s) 154, 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 400
XspI CTAG 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 481
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.