Rh4CG279700

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000235
Physical Location & Seq
Forward (+)
53641723 .. 53643530
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG279700.1

Sequence Viewer

Length: 345 bp
ATGGCGAGAAGAGCTTGCACATCTCTTCCATTTCATGATGGTAGTGTTGAGGAGGAGAAGGGGCCTACCTTCTTCAAGATCATAAGGCCTGGGTTCAACACTGAGCATTTGGCAATTCCCACACATTTCTATAGGGAGATATTTTCTTCAAGCAAATATGATGAACTTTTCCTGGTGACTGCAAAGGGAAAATTCACAGTGACGCTTCTCCCATGCACTGATACAGTGATGTTGTCTGGAGGGTGGTCTTCCTTTAGAAATGACAACCAACTCCAAGAAGATGATATTTGCATCTTTGAGCTTGTGAAAGAAAACACCATGGTGGTTCACATTTTCCGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

114

Amino Acids

13.11

Weight (kDa)

5.75

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 24 - 114 4e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 191
AgsI TTSAA 3 cut(s) 76, 97, 150
AjnI CCWGG 2 cut(s) 88, 171
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 2 cut(s) 14, 301
AluI AGCT 2 cut(s) 14, 301
AoxI GGCC 2 cut(s) 62, 86
ApoI RAATTY 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 240
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 90, 173
BfmI CTRYAG 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 90, 173
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 90, 173
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 89, 318
BseBI CCWGG 2 cut(s) 90, 173
BseDI CCNNGG 2 cut(s) 89, 318
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 2 cut(s) 65, 68
BshFI GGCC 2 cut(s) 64, 88
BsnI GGCC 2 cut(s) 64, 88
Bsp143I GATC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 318
BspANI GGCC 2 cut(s) 64, 88
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 89, 318
BssMI GATC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 90, 173
Bst4CI ACNGT 2 cut(s) 199, 226
Bst6I CTCTTC 2 cut(s) 4, 30
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 318
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 90, 173
BstSCI CCNGG 2 cut(s) 88, 171
BstSFI CTRYAG 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 64, 88
BtgI CCRYGG 1 cut(s) 318
BtsIMutI CAGTG 4 cut(s) 99, 204, 216, 231
Cac8I GCNNGC 1 cut(s) 16
CciI TCATGA 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 62
CseI GACGC 1 cut(s) 211
CviAII CATG 3 cut(s) 35, 213, 319
CviJI RGCY 4 cut(s) 14, 64, 88, 301
CviKI_1 RGCY 4 cut(s) 14, 64, 88, 301
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 4, 30
EarI CTCTTC 2 cut(s) 4, 30
Eco130I CCWWGG 1 cut(s) 318
Eco147I AGGCCT 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 88, 171
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 3 cut(s) 38, 216, 322
FaiI YATR 6 cut(s) 36, 83, 132, 159, 214, 320
FatI CATG 3 cut(s) 34, 212, 318
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 64, 88
HgaI GACGC 1 cut(s) 211
Hin1II CATG 3 cut(s) 38, 216, 322
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 3 cut(s) 35, 76, 237
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 52, 79
HpyCH4III ACNGT 2 cut(s) 199, 226
HpyCH4V TGCA 4 cut(s) 18, 182, 216, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 3 cut(s) 38, 216, 322
Kzo9I GATC 1 cut(s) 78
LguI GCTCTTC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 75, 102, 158, 185, 222
LweI GCATC 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 175, 199
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 6 cut(s) 17, 21, 64, 138, 240, 290
MluCI AATT 2 cut(s) 114, 191
MnlI CCTC 3 cut(s) 43, 46, 233
MslI CAYNNNNRTG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 90, 173
MvaI CCWGG 2 cut(s) 90, 173
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 318
NdeII GATC 1 cut(s) 78
NlaIII CATG 3 cut(s) 38, 216, 322
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 175, 199
OliI CACNNNNGTG 1 cut(s) 320
PagI TCATGA 1 cut(s) 34
PceI AGGCCT 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 4
Psp6I CCWGG 2 cut(s) 88, 171
PspGI CCWGG 2 cut(s) 88, 171
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 4
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 90, 173
SetI ASST 3 cut(s) 16, 71, 303
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 2 cut(s) 114, 191
SseBI AGGCCT 1 cut(s) 88
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 88, 171
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 199, 226
TasI AATT 2 cut(s) 114, 191
TscAI CASTG 4 cut(s) 106, 204, 223, 231
TseFI GTSAC 2 cut(s) 175, 199
Tsp45I GTSAC 2 cut(s) 175, 199
TspDTI ATGAA 2 cut(s) 23, 177
TspRI CASTG 4 cut(s) 106, 204, 223, 231
XapI RAATTY 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.