RchiOBHm_Chr6g0259931

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000235
Physical Location & Seq
Forward (+)
15108111 .. 15110363
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23308

Sequence Viewer

Length: 774 bp
ATGGCGAGAACAACATTCAACAATGGTGGTATGGAGGAAAAAAAGGGCCCTACGTTCTTCAAGATCATAAAAAGCGGTTTCAACACTGAGGATTTGAGAATCCCACCCAAATTCCGGAGACACCTGTTGAATGAACTCTCCGACAGGGCAACTTTGAATTTAATGGATTCTTCAAATAGTTCATGGACTGTTGATGTGAGCCAAACAGAAGGGGAGATATATTTCAAGAATGGATGGCAGAAGTTTGTAAGAGATAACTCCTTAGGTAACTTTGAATTCTTAGTATTTAGGTATGAGAGCGATATGCAATTTAGCATTGAGATCTTTGACAGAAATGCGAGTAAGAGGATCACGTTTCCAGATGTCAGAACACACAGACGAGGTATACACACTCAAAGTTGTCAATCCAACAAACTCAAAGAGGTTAAAGAAGAGGAGGAAGATTACCAAGATAACAAAGAAGAAGAAGCTGCCACATTGCACAAAACTTTTACAAGCATTGTTGGACAAAACTTTTATAATTTGGCAGTTCCTACAGACTTTTCTGTGAAGTACTTTCCTCTGGGATACTACACCATTGTCCTGAAAAATTCAGAGGCAAGAGAATGGGAAGTAAGCGTTGTGCCTAATGGGAAGGATGCTTCCTGTAATACGGTTAAACTTTCTGCAGGATGGGCTGCTTTTAGACGTGACAACCAAATCAACTCCGGAGATACTTGCACATTTGAGCTTGTGGAAAGCAAAACAATGTTGGTTCACATTGATCCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

257

Amino Acids

29.69

Weight (kDa)

6.02

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 19 - 112 5e-17 B3 DNA binding domain
B3 PF02362 174 - 254 2.9e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AccI GTMKAC 1 cut(s) 385
AccIII TCCGGA 2 cut(s) 114, 707
AciI CCGC 1 cut(s) 75
AclWI GGATC 2 cut(s) 356, 758
AcsI RAATTY 4 cut(s) 110, 157, 275, 589
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 8 cut(s) 19, 61, 82, 130, 157, 174, 226, 275
AjiI CACGTC 1 cut(s) 689
AluBI AGCT 2 cut(s) 470, 730
AluI AGCT 2 cut(s) 470, 730
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 2 cut(s) 356, 758
Aor13HI TCCGGA 2 cut(s) 114, 707
AoxI GGCC 1 cut(s) 46
ApaI GGGCCC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 470, 677
ApoI RAATTY 4 cut(s) 110, 157, 275, 589
AspS9I GGNCC 2 cut(s) 46, 47
AxyI CCTNAGG 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 457, 664
BccI CCATC 2 cut(s) 228, 666
BciVI GTATCC 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 112
BfmI CTRYAG 2 cut(s) 534, 666
BfuI GTATCC 1 cut(s) 560
BglII AGATCT 1 cut(s) 321
BisI GCNGC 2 cut(s) 471, 678
BlsI GCNGC 2 cut(s) 472, 679
BmcAI AGTACT 1 cut(s) 554
BmgBI CACGTC 1 cut(s) 689
BmgT120I GGNCC 2 cut(s) 46, 47
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 628
BsaWI WCCGGW 2 cut(s) 114, 707
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse21I CCTNAGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 476
BseAI TCCGGA 2 cut(s) 114, 707
BseGI GGATG 3 cut(s) 239, 643, 677
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 449
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 2 cut(s) 457, 664
BshFI GGCC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 115, 708
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 48
Bsp120I GGGCCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 50
Bsp13I TCCGGA 2 cut(s) 114, 707
Bsp143I GATC 4 cut(s) 63, 321, 348, 763
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 79
BspEI TCCGGA 2 cut(s) 114, 707
BspLI GGNNCC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 670
BspPI GGATC 2 cut(s) 356, 758
BsrDI GCAATG 1 cut(s) 476
BssMI GATC 4 cut(s) 63, 321, 348, 763
BssNAI GTATAC 1 cut(s) 386
Bst1107I GTATAC 1 cut(s) 386
Bst4CI ACNGT 2 cut(s) 190, 655
Bst6I CTCTTC 1 cut(s) 426
BstDEI CTNAG 4 cut(s) 87, 262, 280, 768
BstF5I GGATG 3 cut(s) 239, 643, 677
BstKTI GATC 4 cut(s) 66, 324, 351, 766
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 4 cut(s) 63, 321, 348, 763
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstSFI CTRYAG 2 cut(s) 534, 666
BstSLI GKGCMC 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 457, 664
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BstZ17I GTATAC 1 cut(s) 386
Bsu36I CCTNAGG 1 cut(s) 262
BsuI GTATCC 1 cut(s) 560
BsuRI GGCC 1 cut(s) 48
BtrI CACGTC 1 cut(s) 689
BtsCI GGATG 3 cut(s) 239, 643, 677
BtsIMutI CAGTG 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 46, 47
Csp6I GTAC 1 cut(s) 553
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 183
CviJI RGCY 5 cut(s) 48, 201, 470, 677, 730
CviKI_1 RGCY 5 cut(s) 48, 201, 470, 677, 730
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 4 cut(s) 87, 262, 280, 768
DpnI GATC 4 cut(s) 65, 323, 350, 765
DpnII GATC 4 cut(s) 63, 321, 348, 763
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 262
EcoO109I RGGNCCY 2 cut(s) 46, 47
EcoRI GAATTC 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 1 cut(s) 186
FaiI YATR 8 cut(s) 32, 68, 184, 220, 294, 305, 386, 519
FatI CATG 1 cut(s) 182
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 471, 678
FokI GGATG 3 cut(s) 246, 650, 684
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 471, 678
GluI GCNGC 2 cut(s) 471, 678
HaeIII GGCC 1 cut(s) 48
HapII CCGG 2 cut(s) 115, 708
Hin1II CATG 1 cut(s) 186
HinfI GANTC 2 cut(s) 99, 167
HpaII CCGG 2 cut(s) 115, 708
Hpy166II GTNNAC 2 cut(s) 386, 757
Hpy188I TCNGA 3 cut(s) 142, 368, 595
Hpy188III TCNNGA 6 cut(s) 61, 115, 226, 359, 583, 708
Hpy8I GTNNAC 2 cut(s) 386, 757
HpyAV CCTTC 2 cut(s) 203, 628
HpyCH4III ACNGT 2 cut(s) 190, 655
HpyCH4IV ACGT 3 cut(s) 53, 353, 688
HpyCH4V TGCA 4 cut(s) 307, 481, 668, 720
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpyF3I CTNAG 4 cut(s) 87, 262, 280, 768
HpySE526I ACGT 3 cut(s) 53, 353, 688
Hsp92II CATG 1 cut(s) 186
Kpn2I TCCGGA 2 cut(s) 114, 707
Kzo9I GATC 4 cut(s) 63, 321, 348, 763
LpnPI CCDG 9 cut(s) 128, 130, 137, 372, 548, 596, 654, 658, 721
Lsp1109I GCAGC 2 cut(s) 457, 664
LweI GCATC 1 cut(s) 628
MaeII ACGT 3 cut(s) 53, 353, 688
MaeIII GTNAC 2 cut(s) 266, 689
MalI GATC 4 cut(s) 65, 323, 350, 765
MboI GATC 4 cut(s) 63, 321, 348, 763
MboII GAAGA 6 cut(s) 49, 162, 443, 452, 473, 476
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 6 cut(s) 110, 157, 275, 308, 520, 589
MmeI TCCRAC 3 cut(s) 165, 432, 484
MnlI CCTC 9 cut(s) 28, 82, 339, 374, 415, 427, 430, 570, 589
MroI TCCGGA 2 cut(s) 114, 707
MseI TTAA 3 cut(s) 161, 426, 657
MspI CCGG 2 cut(s) 115, 708
MwoI GCNNNNNNNGC 1 cut(s) 674
NdeII GATC 4 cut(s) 63, 321, 348, 763
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 689
PfeI GAWTC 2 cut(s) 99, 167
PkrI GCNGC 2 cut(s) 472, 679
PsiI TTATAA 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 48
PspOMI GGGCCC 1 cut(s) 46
PspPI GGNCC 2 cut(s) 46, 47
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 1 cut(s) 321
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
SaqAI TTAA 3 cut(s) 161, 426, 657
SatI GCNGC 2 cut(s) 471, 678
Sau3AI GATC 4 cut(s) 63, 321, 348, 763
Sau96I GGNCC 2 cut(s) 46, 47
ScaI AGTACT 1 cut(s) 554
SduI GDGCHC 1 cut(s) 50
SfaNI GCATC 1 cut(s) 628
SfcI CTRYAG 2 cut(s) 534, 666
Sse9I AATT 6 cut(s) 110, 157, 275, 308, 520, 589
SsiI CCGC 1 cut(s) 75
TaaI ACNGT 2 cut(s) 190, 655
TaiI ACGT 3 cut(s) 56, 356, 691
TasI AATT 6 cut(s) 110, 157, 275, 308, 520, 589
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 2 cut(s) 99, 167
Tru1I TTAA 3 cut(s) 161, 426, 657
Tru9I TTAA 3 cut(s) 161, 426, 657
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 2 cut(s) 470, 677
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 2 cut(s) 147, 171
TspRI CASTG 1 cut(s) 91
XapI RAATTY 4 cut(s) 110, 157, 275, 589
XmiI GTMKAC 1 cut(s) 385
ZrmI AGTACT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.