Rorug05G0586500

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000235
Physical Location & Seq
Forward (+)
78383774 .. 78384004
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0586500.1

Sequence Viewer

Length: 231 bp
ATGGATGCTCGTCGAGAGGTTGCTGCGAGTGGAAGCCAACGAGTGCAGAAGGAAAAGGATATCGATAATACAAAGAAACAGGCAATGAGCAGAAGGATGATGGCAGCGGATGAGCAAGGTGACATTAATGATATGGCTGATGCCATCATCAAGAAGTTCAGGAACCAGCTAAAGATTCAAAGGGAAGAATCATTCAAAAGGTTTCAGGAAATGATTGCTCGTGGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

76

Amino Acids

8.86

Weight (kDa)

9.77

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 39 - 74 6.7e-14 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AgsI TTSAA 2 cut(s) 179, 196
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 23, 104
AseI ATTAAT 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 131
BauI CACGAG 1 cut(s) 219
BbvI GCAGC 2 cut(s) 10, 116
BccI CCATC 2 cut(s) 94, 152
BisI GCNGC 2 cut(s) 24, 105
BlsI GCNGC 2 cut(s) 25, 106
BmiI GGNNCC 1 cut(s) 164
BmsI GCATC 1 cut(s) 130
Bsa29I ATCGAT 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 63
BseGI GGATG 3 cut(s) 10, 102, 115
BseMI GCAATG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 10, 116
BsgI GTGCAG 1 cut(s) 65
BshVI ATCGAT 1 cut(s) 63
BspACI CCGC 1 cut(s) 107
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 90
BssSI CACGAG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 10, 102, 115
BstV1I GCAGC 2 cut(s) 10, 116
Bsu15I ATCGAT 1 cut(s) 63
BsuTUI ATCGAT 1 cut(s) 63
BtsCI GGATG 3 cut(s) 10, 102, 115
ClaI ATCGAT 1 cut(s) 63
CviJI RGCY 3 cut(s) 36, 137, 169
CviKI_1 RGCY 3 cut(s) 36, 137, 169
Eco32I GATATC 1 cut(s) 61
EcoRV GATATC 1 cut(s) 61
FaiI YATR 1 cut(s) 134
Fnu4HI GCNGC 2 cut(s) 24, 105
FokI GGATG 3 cut(s) 17, 109, 122
Fsp4HI GCNGC 2 cut(s) 24, 105
GluI GCNGC 2 cut(s) 24, 105
HinfI GANTC 2 cut(s) 175, 188
HphI GGTGA 1 cut(s) 131
Hpy188III TCNNGA 4 cut(s) 14, 151, 160, 206
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 43, 87
HpyCH4V TGCA 1 cut(s) 46
LpnPI CCDG 4 cut(s) 65, 145, 179, 191
Lsp1109I GCAGC 2 cut(s) 10, 116
LweI GCATC 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 1 cut(s) 197
MnlI CCTC 1 cut(s) 10
MseI TTAA 2 cut(s) 126, 229
MspA1I CMGCKG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 175, 188
PkrI GCNGC 2 cut(s) 25, 106
PshBI ATTAAT 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 126, 229
SatI GCNGC 2 cut(s) 24, 105
SetI ASST 4 cut(s) 21, 121, 171, 203
SfaNI GCATC 1 cut(s) 130
SsiI CCGC 1 cut(s) 107
TaqI TCGA 2 cut(s) 13, 63
TfiI GAWTC 2 cut(s) 175, 188
Tru1I TTAA 2 cut(s) 126, 229
Tru9I TTAA 2 cut(s) 126, 229
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 23, 104
Tsp45I GTSAC 1 cut(s) 119
VspI ATTAAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.