pycom05g06500

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000235
Physical Location & Seq
Reverse (-)
8962133 .. 8963431
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06500.4

Sequence Viewer

Length: 774 bp
ATGGCAAGAATGTCCAAGGAGGAGAAGAAGCCTACCTTCTTTCAGATTATTTGCAAAGGTTTCAACACTGAAAAATTGGAGCTGTCCGAGAGAGCAATTTTGAAATTGAAAGGTTCTTCAGATTACTCATGGACTGTCAATGTGACTAAAACACCAAAAGGTGCGGTGCGTTTCAATGGTGGCTGGCAGGAGTTCTTGAAGGATAACTCCTTGGGTCACGGCGACTTTTTGGTGTTCACTTATGATGGAAAGATGCAATTCAGTATAGATATATTCGACAACACTGCGTGTGACAGAATTGATGACAAGATCAACCCCAATTCAATCAGCTCTTCTGGTGACGATTCGGTTCAAAACCTTTCAAGTTCCGAATCCAGTGAGTTTGATGAGAGTACAGAAGAGGAAGAAGATGAAGAAGACGACAGTTGCAAGGACTCGGAAGCTACCTGCGAAGACAACATATCTGAGGATTCAGAAGCTACTCAGACTGAATCTTTCAAATCTAACTTTCCTCATTTTGAATGCGTCATCGGAGAATCTGTGTTCGTCCCTTCAGCGTTCTCCAGGAAGCATTTCCCCCAAGGGAAAAGTTTTGAGGTGATCCTGAAAAATGCAAAGGGAAAGAAATGGGAAGTTAAAGCCTACCCTGCCAATGGATCGCACTTTTTGTCGAAAGGGTGGCCTGAATTTGCATCTGCTAATAAGATCGTTATCGACAGTACTTGCATATTCGAGCTTTTGAGGGCTAACACAATGATGGTTCACATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

258

Amino Acids

28.9

Weight (kDa)

4.78

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 455
AciI CCGC 1 cut(s) 164
AclWI GGATC 2 cut(s) 595, 664
AcsI RAATTY 1 cut(s) 686
AcuI CTGAAG 2 cut(s) 102, 537
AdeI CACNNNGTG 1 cut(s) 288
AfaI GTAC 2 cut(s) 394, 721
AfiI CCNNNNNNNGG 1 cut(s) 653
AjnI CCWGG 1 cut(s) 563
AluBI AGCT 5 cut(s) 82, 330, 443, 479, 736
AluI AGCT 5 cut(s) 82, 330, 443, 479, 736
AlwI GGATC 2 cut(s) 595, 664
AoxI GGCC 1 cut(s) 680
ApoI RAATTY 1 cut(s) 686
Asp700I GAANNNNTTC 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 350, 610
BbsI GAAGAC 2 cut(s) 423, 459
BccI CCATC 2 cut(s) 239, 751
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 1 cut(s) 565
BfuAI ACCTGC 1 cut(s) 455
BmcAI AGTACT 1 cut(s) 721
Bme1390I CCNGG 1 cut(s) 565
BmrFI CCNGG 1 cut(s) 565
BmsI GCATC 2 cut(s) 243, 701
BpiI GAAGAC 2 cut(s) 423, 459
BpmI CTGGAG 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 710
BsaJI CCNNGG 3 cut(s) 15, 210, 580
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 1 cut(s) 653
Bse1I ACTGG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 710
BseBI CCWGG 1 cut(s) 565
BseDI CCNNGG 3 cut(s) 15, 210, 580
BseJI GATNNNNATC 1 cut(s) 710
BseLI CCNNNNNNNGG 1 cut(s) 653
BseMII CTCAG 2 cut(s) 456, 497
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 682
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 1 cut(s) 653
BsmFI GGGAC 1 cut(s) 533
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 1 cut(s) 682
Bsp143I GATC 4 cut(s) 309, 600, 656, 705
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 682
BspCNI CTCAG 2 cut(s) 457, 496
BspMI ACCTGC 1 cut(s) 455
BspPI GGATC 2 cut(s) 595, 664
BspQI GCTCTTC 1 cut(s) 337
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 3 cut(s) 15, 210, 580
BssMI GATC 4 cut(s) 309, 600, 656, 705
BssT1I CCWWGG 3 cut(s) 15, 210, 580
Bst2UI CCWGG 1 cut(s) 565
Bst4CI ACNGT 3 cut(s) 136, 425, 719
Bst6I CTCTTC 2 cut(s) 337, 393
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 465, 483
BstKTI GATC 4 cut(s) 312, 603, 659, 708
BstMBI GATC 4 cut(s) 309, 600, 656, 705
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 1 cut(s) 565
BstSCI CCNGG 1 cut(s) 563
BstV2I GAAGAC 2 cut(s) 423, 459
BsuRI GGCC 1 cut(s) 682
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 66, 282, 382
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 185
CseI GACGC 1 cut(s) 514
Csp6I GTAC 2 cut(s) 393, 720
CviAII CATG 1 cut(s) 129
CviQI GTAC 2 cut(s) 393, 720
DdeI CTNAG 2 cut(s) 465, 483
DpnI GATC 4 cut(s) 311, 602, 658, 707
DpnII GATC 4 cut(s) 309, 600, 656, 705
DraIII CACNNNGTG 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 337, 393
EarI CTCTTC 2 cut(s) 337, 393
Eco130I CCWWGG 3 cut(s) 15, 210, 580
Eco57I CTGAAG 2 cut(s) 102, 537
EcoRII CCWGG 1 cut(s) 563
EcoT14I CCWWGG 3 cut(s) 15, 210, 580
ErhI CCWWGG 3 cut(s) 15, 210, 580
FaeI CATG 1 cut(s) 132
FaiI YATR 6 cut(s) 130, 243, 266, 272, 461, 728
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 533
FatI CATG 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 547
HaeIII GGCC 1 cut(s) 682
HgaI GACGC 1 cut(s) 514
Hin1II CATG 1 cut(s) 132
HinfI GANTC 6 cut(s) 344, 371, 434, 470, 491, 536
HphI GGTGA 2 cut(s) 350, 610
Hpy166II GTNNAC 2 cut(s) 237, 763
Hpy188I TCNGA 9 cut(s) 45, 88, 121, 370, 439, 466, 475, 486, 533
Hpy188III TCNNGA 2 cut(s) 196, 604
Hpy8I GTNNAC 2 cut(s) 237, 763
HpyAV CCTTC 3 cut(s) 46, 193, 561
HpyCH4III ACNGT 3 cut(s) 136, 425, 719
HpyCH4V TGCA 6 cut(s) 54, 256, 429, 614, 692, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 2 cut(s) 465, 483
Hsp92II CATG 1 cut(s) 132
Kzo9I GATC 4 cut(s) 309, 600, 656, 705
LguI GCTCTTC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 79
LweI GCATC 2 cut(s) 243, 701
MaeIII GTNAC 4 cut(s) 142, 215, 290, 338
MalI GATC 4 cut(s) 311, 602, 658, 707
MboI GATC 4 cut(s) 309, 600, 656, 705
MboII GAAGA 9 cut(s) 37, 108, 324, 410, 416, 419, 425, 428, 464
MluCI AATT 7 cut(s) 74, 96, 104, 257, 297, 319, 686
MlyI GAGTC 1 cut(s) 428
MnlI CCTC 6 cut(s) 13, 394, 460, 522, 589, 735
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 565
Mva1269I GAATGC 1 cut(s) 527
MvaI CCWGG 1 cut(s) 565
MwoI GCNNNNNNNGC 1 cut(s) 647
NdeII GATC 4 cut(s) 309, 600, 656, 705
NlaIII CATG 1 cut(s) 132
NmuCI GTSAC 4 cut(s) 142, 215, 290, 338
PciSI GCTCTTC 1 cut(s) 337
PctI GAATGC 1 cut(s) 527
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 5 cut(s) 344, 371, 470, 491, 536
PfoI TCCNGGA 1 cut(s) 563
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 563
PspGI CCWGG 1 cut(s) 563
RsaI GTAC 2 cut(s) 394, 721
RsaNI GTAC 2 cut(s) 393, 720
RseI CAYNNNNRTG 1 cut(s) 755
SapI GCTCTTC 1 cut(s) 337
SaqAI TTAA 1 cut(s) 636
Sau3AI GATC 4 cut(s) 309, 600, 656, 705
ScaI AGTACT 1 cut(s) 721
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 565
SfaNI GCATC 2 cut(s) 243, 701
SmiMI CAYNNNNRTG 1 cut(s) 755
Sse9I AATT 7 cut(s) 74, 96, 104, 257, 297, 319, 686
SsiI CCGC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 563
StyI CCWWGG 3 cut(s) 15, 210, 580
TaaI ACNGT 3 cut(s) 136, 425, 719
TaqI TCGA 4 cut(s) 276, 671, 714, 732
TasI AATT 7 cut(s) 74, 96, 104, 257, 297, 319, 686
TatI WGTACW 2 cut(s) 392, 719
TfiI GAWTC 5 cut(s) 344, 371, 470, 491, 536
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 3 cut(s) 73, 289, 382
TseFI GTSAC 4 cut(s) 142, 215, 290, 338
Tsp45I GTSAC 4 cut(s) 142, 215, 290, 338
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 3 cut(s) 73, 289, 382
XapI RAATTY 1 cut(s) 686
XmnI GAANNNNTTC 1 cut(s) 572
ZrmI AGTACT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.