Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000235

Physical Location & Seq

Genomic Coordinates Forward (+)

78920167 .. 78922786

Gene Structure 2620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0591400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGGAGCAATTCGTACTCAGAGTCCCACCTTCAGTTGCAGAGCGATTAGATCGTCTTCTCAGCGAGAATGCTTCTTCAGACGACAAGTCGTTGGATTTGTCTTTCGAAGAGGATGGCCGGAGTGGAACATTTGTAATTGGCAATGACCGGTTCCCTGCATCGCTCTTGGATCTTCCTACTGTTGTGGAATCCTACAAAACGTATGACGATAGTGTGTTAATTAAGACTGCAGATATTGGTCAGATGATTATGGTTAGAGATCCAAATGATCCTGCTCCAGATACAGTTGAGTACAGGCATGGTCTCACCCCTCCAATGAGGGATGCTCGAAAGCGAAGATTTCGCAGGGAGCCTGATCTAAATCCTGAGCTTGTCCAGCGTGTTGAGCAAGATCTACTGAACATTAGTGCTGGTGGACCAGCTGACAATGTGGATATTGAAGTAGCTGAGCAAGAGAAAAATCGAGATGGCAAGGCTGGTAATACAAGTAAAAACCCTGCACCAGCACCTGAATCAAAAACTGATATTCCTGAGGCTGCTACAAACACAGGGGAGCCTGATGGAGAGCATGATAGAAGTGATTCGGATGAATCTGACGATTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

203

Amino Acids

22.45

Weight (kDa)

4.36

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAFII55_N	PF04658	1 - 132	1.6e-32	TAFII55 protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000235)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica	MD05G1072700.v1.1
prunus_persica	Prupe.8G113100_v2.0.a1
pyrus_communis	pycom05g06500 pycom10g06950
rosa_chinensis	RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata	RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora	Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii	Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa	Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha	Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana	Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	180, 257, 266
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	2 cut(s)	18, 63
AfaI	GTAC	2 cut(s)	18, 296
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	443, 606
AhdI	GACNNNNNGTC	1 cut(s)	88
AluBI	AGCT	3 cut(s)	373, 425, 449
AluI	AGCT	3 cut(s)	373, 425, 449
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	3 cut(s)	180, 257, 266
AlwNI	CAGNNNCTG	1 cut(s)	512
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	539
AsiGI	ACCGGT	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	301
AsuII	TTCGAA	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	3 cut(s)	110, 464, 557
BcoDI	GTCTC	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	231
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	1 cut(s)	540
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	419
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	3 cut(s)	155, 354, 558
BmsI	GCATC	2 cut(s)	170, 316
BpiI	GAAGAC	1 cut(s)	50
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu1102I	GCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	363
BseGI	GGATG	3 cut(s)	121, 331, 595
BseJI	GATNNNNATC	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	5 cut(s)	34, 76, 360, 441, 525
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	526
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	120
BshTI	ACCGGT	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	121, 151
BslFI	GGGAC	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	108
Bsp143I	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
Bsp1720I	GCTNAGC	1 cut(s)	450
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	5 cut(s)	33, 75, 361, 442, 526
BspLI	GGNNCC	3 cut(s)	155, 354, 558
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	3 cut(s)	180, 257, 266
BspT104I	TTCGAA	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssMI	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
Bst4CI	ACNGT	2 cut(s)	184, 289
Bst6I	CTCTTC	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	108
BstDEI	CTNAG	5 cut(s)	20, 62, 369, 450, 534
BstF5I	GGATG	3 cut(s)	121, 331, 595
BstKTI	GATC	6 cut(s)	55, 175, 265, 274, 361, 397
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 388
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	3 cut(s)	172, 262, 394
BstYI	RGATCY	3 cut(s)	172, 262, 394
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	121, 331, 595
CaiI	CAGNNNCTG	1 cut(s)	512
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	17, 295
CspAI	ACCGGT	1 cut(s)	150
CviAII	CATG	2 cut(s)	302, 572
CviJI	RGCY	8 cut(s)	120, 355, 373, 425, 449, 479, 539, 559
CviKI_1	RGCY	8 cut(s)	120, 355, 373, 425, 449, 479, 539, 559
CviQI	GTAC	2 cut(s)	17, 295
DdeI	CTNAG	5 cut(s)	20, 62, 369, 450, 534
DpnI	GATC	6 cut(s)	54, 174, 264, 273, 360, 396
DpnII	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
DriI	GACNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	105
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	2 cut(s)	18, 63
Eco81I	CCTNAGG	1 cut(s)	534
FaeI	CATG	2 cut(s)	305, 575
FaiI	YATR	4 cut(s)	207, 254, 303, 573
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	2 cut(s)	301, 571
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	3 cut(s)	128, 338, 602
Fsp4HI	GCNGC	1 cut(s)	540
GluI	GCNGC	1 cut(s)	540
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	2 cut(s)	121, 151
Hin1II	CATG	2 cut(s)	305, 575
HinfI	GANTC	6 cut(s)	24, 191, 515, 584, 593, 602
HpaII	CCGG	2 cut(s)	121, 151
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	5 cut(s)	23, 82, 246, 589, 598
Hpy188III	TCNNGA	4 cut(s)	281, 368, 467, 533
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	2 cut(s)	184, 289
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	41, 161, 233, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 388
HpyF3I	CTNAG	5 cut(s)	20, 62, 369, 450, 534
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	305, 575
Kzo9I	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
LmnI	GCTCC	4 cut(s)	7, 283, 352, 556
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	2 cut(s)	170, 316
MaeII	ACGT	1 cut(s)	203
MalI	GATC	6 cut(s)	54, 174, 264, 273, 360, 396
MboI	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
MboII	GAAGA	5 cut(s)	50, 69, 122, 167, 351
MflI	RGATCY	3 cut(s)	172, 262, 394
MluCI	AATT	4 cut(s)	11, 138, 222, 606
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	106, 315, 324, 529
MroXI	GAANNNNTTC	1 cut(s)	583
MseI	TTAA	2 cut(s)	221, 225
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	121, 151
Mva1269I	GAATGC	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	379, 388
NdeII	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
NlaIII	CATG	2 cut(s)	305, 575
NlaIV	GGNNCC	3 cut(s)	155, 354, 558
NspV	TTCGAA	1 cut(s)	108
PacI	TTAATTAA	1 cut(s)	225
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	583
PfeI	GAWTC	5 cut(s)	191, 515, 584, 593, 602
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PspN4I	GGNNCC	3 cut(s)	155, 354, 558
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	3 cut(s)	172, 262, 394
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	18, 296
RsaNI	GTAC	2 cut(s)	17, 295
SaqAI	TTAA	2 cut(s)	221, 225
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	33
SetI	ASST	6 cut(s)	34, 206, 375, 427, 451, 514
SfaNI	GCATC	2 cut(s)	170, 316
SfcI	CTRYAG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	1 cut(s)	419
Sse9I	AATT	4 cut(s)	11, 138, 222, 606
TaaI	ACNGT	2 cut(s)	184, 289
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	108, 331, 466
TasI	AATT	4 cut(s)	11, 138, 222, 606
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	5 cut(s)	191, 515, 584, 593, 602
Tru1I	TTAA	2 cut(s)	221, 225
Tru9I	TTAA	2 cut(s)	221, 225
TseI	GCWGC	1 cut(s)	539
TspDTI	ATGAA	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.