FvH4_4g19990

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000235
Physical Location & Seq
Forward (+)
23421444 .. 23424754
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19990.t1

Sequence Viewer

Length: 873 bp
ATGCCGAGAATCACTAACAGAAACAAAAACAAAAACAAAGCAACGGTGAGAAGAGCATCCACATCCCTTTCATTTCATGTTGGTGGTGTTGAGGAGGAGGAGAATGGGCCTACCTTCTTCAAGATCATAAAGCCTGGATTCAACACTAAGCATCTAAGAATCCCACCTGCGTTTCGGAAGCATGTATCACATGAACTCACTACGAGGGCAATCTTGAAATTGGAGAAGTCATCAGAATCTTCCTGGACTGTTATAGTAAGTAAAACAGGAAGGGACATATACTTGAAGGATGGCTGGCAGGAGTTTCTAAGAGATAACTCCCTAGGTGATTCTGAGTTCTTAGTGTTTAGGTATGACAAACACATGCATTTCACAATTAATATTTTTGACAAGAACTGTGTCGAAAGAGTGAATATCGCCAACCTCAGAACAAGTGAAGCATCCACCTTTCCAGACAGTTCTGAAAGGCCTTTGGCAAGACCACCAACAGTTGCAGGTAATCATCGATATGAGTTGTCTGCGGAAGCTGCTAAGGGGCTTAAATCCGAAGGTGAACACCTTCCAAGACTTGCAGCTGCTGCAGCTTTCAGATCCAAATTTCCCTATTTTACAAAAGTTCTTAAAAAATCGAGGATGGTGGCAATCCCCACACGCTTCTATAAGGAGATGGTTCCTTCAAGAAATTTTGATAAAATTTTCCTGACGACTTCAAAGGGAAAATTCACAGTGACGCTTTATACTTGCGCTGATACAATGATGTTGTCTGGAGGGTGGTCTTCCTTTAGAAATGATAACCAACTCCAGGTTGGTGATATGTGCATCTTTGAGCTTGTCAAAGAAAACACCATGAAGGTTCACATTTTCCGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

291

Amino Acids

33.22

Weight (kDa)

9.87

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 39 - 132 2.4e-16 B3 DNA binding domain
B3 PF02362 208 - 290 3.5e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 175
Acc36I ACCTGC 2 cut(s) 175, 485
AciI CCGC 1 cut(s) 521
AclWI GGATC 1 cut(s) 585
AcsI RAATTY 4 cut(s) 596, 682, 693, 719
AfiI CCNNNNNNNGG 1 cut(s) 802
AgsI TTSAA 6 cut(s) 121, 142, 217, 286, 678, 711
AjnI CCWGG 3 cut(s) 133, 242, 801
AluBI AGCT 4 cut(s) 527, 575, 584, 829
AluI AGCT 4 cut(s) 527, 575, 584, 829
AlwI GGATC 1 cut(s) 585
AlwNI CAGNNNCTG 1 cut(s) 578
AoxI GGCC 2 cut(s) 107, 467
ApeKI GCWGC 5 cut(s) 527, 572, 575, 578, 581
ApoI RAATTY 4 cut(s) 596, 682, 693, 719
AseI ATTAAT 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 558
AspA2I CCTAGG 1 cut(s) 322
AspLEI GCGC 1 cut(s) 746
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 4 cut(s) 58, 338, 563, 821
AvrII CCTAGG 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 768
BbvI GCAGC 5 cut(s) 514, 562, 565, 584, 593
BccI CCATC 3 cut(s) 284, 628, 661
BciT130I CCWGG 3 cut(s) 135, 244, 803
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 579
BfuAI ACCTGC 2 cut(s) 175, 485
BisI GCNGC 5 cut(s) 528, 573, 576, 579, 582
BlnI CCTAGG 1 cut(s) 322
BlsI GCNGC 5 cut(s) 529, 574, 577, 580, 583
Bme1390I CCNGG 3 cut(s) 135, 244, 803
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 672
BmrFI CCNGG 3 cut(s) 135, 244, 803
BmsI GCATC 4 cut(s) 65, 160, 449, 828
BpiI GAAGAC 1 cut(s) 768
BpmI CTGGAG 2 cut(s) 785, 786
Bpu10I CCTNAGC 1 cut(s) 531
Bsa29I ATCGAT 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 802
BseBI CCWGG 3 cut(s) 135, 244, 803
BseCI ATCGAT 1 cut(s) 505
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 5 cut(s) 56, 62, 295, 440, 639
BseLI CCNNNNNNNGG 1 cut(s) 802
BseMII CTCAG 2 cut(s) 324, 439
BseRI GAGGAG 3 cut(s) 107, 110, 113
BseXI GCAGC 5 cut(s) 514, 562, 565, 584, 593
BshFI GGCC 2 cut(s) 109, 469
BshVI ATCGAT 1 cut(s) 505
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 802
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 2 cut(s) 109, 469
Bsp143I GATC 2 cut(s) 123, 590
BspACI CCGC 1 cut(s) 521
BspANI GGCC 2 cut(s) 109, 469
BspCNI CTCAG 2 cut(s) 325, 438
BspDI ATCGAT 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 672
BspMAI CTGCAG 1 cut(s) 583
BspMI ACCTGC 2 cut(s) 175, 485
BspPI GGATC 1 cut(s) 585
BspQI GCTCTTC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 2 cut(s) 123, 590
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 3 cut(s) 135, 244, 803
Bst4CI ACNGT 6 cut(s) 46, 250, 398, 458, 490, 727
Bst6I CTCTTC 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 7 cut(s) 147, 155, 308, 333, 340, 425, 531
BstF5I GGATG 5 cut(s) 56, 62, 295, 440, 639
BstHHI GCGC 1 cut(s) 746
BstKTI GATC 2 cut(s) 126, 593
BstMBI GATC 2 cut(s) 123, 590
BstMWI GCNNNNNNNGC 3 cut(s) 527, 578, 581
BstNI CCWGG 3 cut(s) 135, 244, 803
BstNSI RCATGY 2 cut(s) 185, 367
BstSCI CCNGG 3 cut(s) 133, 242, 801
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 5 cut(s) 514, 562, 565, 584, 593
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 1 cut(s) 590
BstYI RGATCY 1 cut(s) 590
Bsu15I ATCGAT 1 cut(s) 505
BsuRI GGCC 2 cut(s) 109, 469
BsuTUI ATCGAT 1 cut(s) 505
BtsCI GGATG 5 cut(s) 56, 62, 295, 440, 639
BtsIMutI CAGTG 1 cut(s) 732
BveI ACCTGC 2 cut(s) 175, 485
Cac8I GCNNGC 1 cut(s) 296
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 1 cut(s) 746
Cfr13I GGNCC 1 cut(s) 107
ClaI ATCGAT 1 cut(s) 505
CseI GACGC 1 cut(s) 739
CviAII CATG 5 cut(s) 77, 182, 191, 364, 847
CviJI RGCY 9 cut(s) 109, 133, 294, 469, 527, 538, 575, 584, 829
CviKI_1 RGCY 9 cut(s) 109, 133, 294, 469, 527, 538, 575, 584, 829
DdeI CTNAG 7 cut(s) 147, 155, 308, 333, 340, 425, 531
DpnI GATC 2 cut(s) 125, 592
DpnII GATC 2 cut(s) 123, 590
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 322
Eco147I AGGCCT 1 cut(s) 469
EcoRII CCWGG 3 cut(s) 133, 242, 801
EcoT14I CCWWGG 1 cut(s) 322
EcoT22I ATGCAT 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 5 cut(s) 80, 185, 194, 367, 850
FaqI GGGAC 1 cut(s) 287
FatI CATG 5 cut(s) 76, 181, 190, 363, 846
Fnu4HI GCNGC 5 cut(s) 528, 573, 576, 579, 582
FokI GGATG 5 cut(s) 43, 49, 302, 427, 646
Fsp4HI GCNGC 5 cut(s) 528, 573, 576, 579, 582
FspBI CTAG 1 cut(s) 323
GlaI GCGC 1 cut(s) 745
GluI GCNGC 5 cut(s) 528, 573, 576, 579, 582
GsuI CTGGAG 2 cut(s) 785, 786
HaeIII GGCC 2 cut(s) 109, 469
HgaI GACGC 1 cut(s) 739
HhaI GCGC 1 cut(s) 746
Hin1II CATG 5 cut(s) 80, 185, 194, 367, 850
Hin6I GCGC 1 cut(s) 744
HinP1I GCGC 1 cut(s) 744
HinfI GANTC 5 cut(s) 9, 138, 159, 236, 329
HphI GGTGA 4 cut(s) 58, 338, 563, 821
Hpy166II GTNNAC 2 cut(s) 554, 856
Hpy188I TCNGA 8 cut(s) 177, 235, 334, 428, 463, 547, 590, 866
Hpy188III TCNNGA 6 cut(s) 121, 214, 452, 678, 700, 765
Hpy8I GTNNAC 2 cut(s) 554, 856
HpyAV CCTTC 7 cut(s) 124, 264, 280, 542, 569, 684, 844
HpyCH4III ACNGT 6 cut(s) 46, 250, 398, 458, 490, 727
HpyCH4V TGCA 5 cut(s) 367, 494, 572, 581, 819
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 578, 581
HpyF3I CTNAG 7 cut(s) 147, 155, 308, 333, 340, 425, 531
Hsp92II CATG 5 cut(s) 80, 185, 194, 367, 850
HspAI GCGC 1 cut(s) 744
Kzo9I GATC 2 cut(s) 123, 590
LguI GCTCTTC 1 cut(s) 46
Lsp1109I GCAGC 5 cut(s) 514, 562, 565, 584, 593
LweI GCATC 4 cut(s) 65, 160, 449, 828
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 727
MalI GATC 2 cut(s) 125, 592
MboI GATC 2 cut(s) 123, 590
MboII GAAGA 4 cut(s) 63, 109, 231, 768
MflI RGATCY 1 cut(s) 590
MluCI AATT 6 cut(s) 218, 375, 596, 682, 693, 719
MnlI CCTC 7 cut(s) 85, 88, 91, 198, 434, 624, 761
Mph1103I ATGCAT 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 3 cut(s) 378, 540, 621
MslI CAYNNNNRTG 2 cut(s) 81, 507
MspA1I CMGCKG 1 cut(s) 575
MspR9I CCNGG 3 cut(s) 135, 244, 803
MvaI CCWGG 3 cut(s) 135, 244, 803
MwoI GCNNNNNNNGC 3 cut(s) 527, 578, 581
NdeII GATC 2 cut(s) 123, 590
NlaIII CATG 5 cut(s) 80, 185, 194, 367, 850
NlaIV GGNNCC 1 cut(s) 672
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 727
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 2 cut(s) 185, 367
PaqCI CACCTGC 1 cut(s) 175
PceI AGGCCT 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 5 cut(s) 9, 138, 159, 236, 329
PfoI TCCNGGA 1 cut(s) 242
PkrI GCNGC 5 cut(s) 529, 574, 577, 580, 583
PshBI ATTAAT 1 cut(s) 378
Psp6I CCWGG 3 cut(s) 133, 242, 801
PspGI CCWGG 3 cut(s) 133, 242, 801
PspN4I GGNNCC 1 cut(s) 672
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 1 cut(s) 590
PvuII CAGCTG 1 cut(s) 575
RseI CAYNNNNRTG 2 cut(s) 81, 507
SapI GCTCTTC 1 cut(s) 46
SaqAI TTAA 3 cut(s) 378, 540, 621
SatI GCNGC 5 cut(s) 528, 573, 576, 579, 582
Sau3AI GATC 2 cut(s) 123, 590
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 3 cut(s) 135, 244, 803
SfaNI GCATC 4 cut(s) 65, 160, 449, 828
SfcI CTRYAG 1 cut(s) 579
SmiMI CAYNNNNRTG 2 cut(s) 81, 507
Sse9I AATT 6 cut(s) 218, 375, 596, 682, 693, 719
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 1 cut(s) 521
SspI AATATT 1 cut(s) 382
SspMI CTAG 1 cut(s) 323
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 3 cut(s) 133, 242, 801
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 6 cut(s) 46, 250, 398, 458, 490, 727
TaqI TCGA 3 cut(s) 402, 505, 629
TasI AATT 6 cut(s) 218, 375, 596, 682, 693, 719
TfiI GAWTC 5 cut(s) 9, 138, 159, 236, 329
Tru1I TTAA 3 cut(s) 378, 540, 621
Tru9I TTAA 3 cut(s) 378, 540, 621
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 5 cut(s) 527, 572, 575, 578, 581
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 4 cut(s) 60, 65, 207, 863
TspRI CASTG 1 cut(s) 732
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 4 cut(s) 596, 682, 693, 719
XceI RCATGY 2 cut(s) 185, 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 803
XmaJI CCTAGG 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.