Rorug05G0586700

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000235
Physical Location & Seq
Forward (+)
78401998 .. 78402300
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0586700.1

Sequence Viewer

Length: 303 bp
ATGGAACCTTCGAGATCTATCTCGAAAACCCATGTTATGTTTACTTTTGATCAGTTGGTGTACTACGACAAGAACATTAAAGGGAAGATGAGCTTCGGCTCTGTTTCCGATGTGTCGGGGATTCAAGCCAAGAAGCTATTCATTTGGGTTACCGTGAAGAGGATGCATACGGAACAAGGGTCTGATTCAGTTGAGTTTTACGTTGGGGCTCTGTCTGAGAAATTGCCTGCTAAACAGTTCGAGGATATTCCTGTATGTAAGAGCAAGGCTTGCCTAGAAGGAGCTAGTGTTGAGTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

100

Amino Acids

11.19

Weight (kDa)

7.76

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 17 - 81 5.1e-16 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 3 cut(s) 93, 136, 284
AluI AGCT 3 cut(s) 93, 136, 284
Asp700I GAANNNNTTC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 211
BclI TGATCA 1 cut(s) 49
BfaI CTAG 2 cut(s) 275, 285
BglII AGATCT 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 14, 49
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 6
BssMI GATC 2 cut(s) 14, 49
Bst4CI ACNGT 2 cut(s) 154, 237
Bst6I CTCTTC 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 228, 271
BstDEI CTNAG 1 cut(s) 216
BstEII GGTNACC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 2 cut(s) 17, 52
BstMBI GATC 2 cut(s) 14, 49
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstPI GGTNACC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 228, 271
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 32
CviJI RGCY 7 cut(s) 93, 99, 128, 136, 209, 269, 284
CviKI_1 RGCY 7 cut(s) 93, 99, 128, 136, 209, 269, 284
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 216
DpnI GATC 2 cut(s) 16, 51
DpnII GATC 2 cut(s) 14, 49
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 211
Eco91I GGTNACC 1 cut(s) 148
EcoO65I GGTNACC 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 211
FaeI CATG 1 cut(s) 35
FaiI YATR 4 cut(s) 33, 38, 168, 256
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FatI CATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 49
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 211
FspBI CTAG 2 cut(s) 275, 285
Hin1II CATG 1 cut(s) 35
HinfI GANTC 3 cut(s) 121, 185, 293
Hpy166II GTNNAC 2 cut(s) 42, 61
Hpy188I TCNGA 3 cut(s) 109, 184, 217
Hpy188III TCNNGA 2 cut(s) 12, 22
Hpy8I GTNNAC 2 cut(s) 42, 61
HpyAV CCTTC 2 cut(s) 18, 272
HpyCH4III ACNGT 2 cut(s) 154, 237
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 2 cut(s) 14, 49
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 2 cut(s) 240, 264
LweI GCATC 1 cut(s) 153
MaeI CTAG 2 cut(s) 275, 285
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 16, 51
MboI GATC 2 cut(s) 14, 49
MboII GAAGA 2 cut(s) 97, 169
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 221
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 2 cut(s) 153, 235
Mph1103I ATGCAT 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 2 cut(s) 14, 49
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 121, 185
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspEI GGTNACC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 2 cut(s) 14, 49
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 1 cut(s) 211
SetI ASST 5 cut(s) 10, 95, 138, 204, 286
SfaNI GCATC 1 cut(s) 153
Sse9I AATT 1 cut(s) 221
SspMI CTAG 2 cut(s) 275, 285
TaaI ACNGT 2 cut(s) 154, 237
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 11, 23, 240
TasI AATT 1 cut(s) 221
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 2 cut(s) 121, 185
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 130
TspGWI ACGGA 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 2 cut(s) 275, 285
Zsp2I ATGCAT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.